BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0143.0062.p (257 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002967090.1| hypothetical protein MexAM1_META2p0955 [Meth... 162 4e-38 ref|YP_002967091.1| hypothetical protein MexAM1_META2p0956 [Meth... 137 1e-30 ref|ZP_08869914.1| transcriptional regulator, LuxR family [Azosp... 127 2e-27 ref|YP_001240084.1| putative transcriptional activator [Bradyrhi... 116 3e-24 ref|YP_001242900.1| LuxR family transcriptional regulator [Brady... 103 2e-20 >ref|YP_002967090.1| hypothetical protein MexAM1_META2p0955 [Methylobacterium extorquens AM1] gb|ACS43749.1| Hypothetical protein MexAM1_META2p0955 [Methylobacterium extorquens AM1] Length = 296 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 88/258 (34%), Positives = 142/258 (55%), Gaps = 5/258 (1%) Query: 3 LVDAISTIEASDTIDELSSSLHRVVQNYGFSGFAFVDAGRPDLDLPYHIGTFPDAWKRAY 62 L DA++ ++ + + +L LH GF F+F++ I T W+ Y Sbjct: 41 LDDAMTAVDGARCVQDLGEILHLTATKAGFESFSFLNGATVASTSESIIMTVSKDWQDTY 100 Query: 63 VQNEFVHADPALARSRRTNTPFSWSSLKLPERSGRKRPPEVKTMDAAREFGFKDGFVVPF 122 F+ DP L R+ +N+ F WS ++LP K P +TM+AAR+ G+ DG V+P Sbjct: 101 FSEGFLDVDPCLMRALTSNSSFMWSDIELPPVVNGKVPGARRTMEAARDHGYVDGLVLPL 160 Query: 123 HYRDRLGAVHSSSTVFFWEDEPRDFDKLFVCHRHELHLLMIYWVQRAMDI---VNRDQRN 179 H D G+ ++S FW+++ R ++ + H LH+L + W Q+ D+ ++ Sbjct: 161 HLVDTKGSPYNSFCSLFWKEDERLLPEVSRRYGHYLHMLAMLWEQKLQDLSPQLSTGMLG 220 Query: 180 APTILKPADAAETIKLTGREKEVIAWAARGKTVADTAQILGISPETVEGFIKQALRKLEA 239 + ++L +A T L+GRE++V+AWAA GKT +TA ILG+S ETV + +A +KL A Sbjct: 221 SISVL--GNARSTKALSGRERDVLAWAAHGKTAGETALILGLSMETVNHHLGKAQKKLMA 278 Query: 240 SNKTHGVAKSIALGIIDL 257 +NKTH VA +I G+I + Sbjct: 279 ANKTHAVAIAINRGVISV 296 >ref|YP_002967091.1| hypothetical protein MexAM1_META2p0956 [Methylobacterium extorquens AM1] gb|ACS43750.1| Hypothetical protein MexAM1_META2p0956 [Methylobacterium extorquens AM1] Length = 265 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 88/254 (34%), Positives = 127/254 (50%), Gaps = 14/254 (5%) Query: 5 DAISTIEASDTIDELSSSLHRVVQNYGFSGFAFVDAGRPDLDLPYHI-GTFPDAWKRAYV 63 D ++ I+A+ T +L L GF FAF+D GR + + I T AW+ Y Sbjct: 11 DGLAAIDAAKTSADLPGILQATASKAGFDSFAFLD-GRAETSVGGRIITTVAPAWQETYA 69 Query: 64 QNEFVHADPALARSRRTNTPFSWSSLKLPERSGRKRPPEVK-TMDAAREFGFKDGFVVPF 122 + DP + R +N+PF WS + LPE +RP + TM AAR+ G+ DG V+P Sbjct: 70 RENLAAHDPCVRRVAESNSPFFWSDIVLPEDD--RRPDLTRMTMTAARDMGYYDGLVMPL 127 Query: 123 HYRDRLGAVHSSSTVFFWEDEPRDFDKLFVCHRHEL-HLLMIYWVQRAMDIVNRDQRNAP 181 H D G SS FW D D ++ + +L W Q+ D+ + A Sbjct: 128 HMADANGVRMLSSLSLFWADGSEDVRRVIGPRGPAVVKMLAAAWAQKLSDL---GEAEAK 184 Query: 182 TILKPADAAETI-----KLTGREKEVIAWAARGKTVADTAQILGISPETVEGFIKQALRK 236 + PA + KLT RE +V++WAA+GKT +T+ IL + ETV + A RK Sbjct: 185 PVQSPAKVLTGLFGRPPKLTSREVDVLSWAAKGKTADETSVILALGRETVHTHLSNACRK 244 Query: 237 LEASNKTHGVAKSI 250 L+ASNKTH VA ++ Sbjct: 245 LQASNKTHAVAMAV 258 >ref|ZP_08869914.1| transcriptional regulator, LuxR family [Azospirillum amazonense Y2] gb|EGY00497.1| transcriptional regulator, LuxR family [Azospirillum amazonense Y2] Length = 257 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/261 (31%), Positives = 135/261 (51%), Gaps = 23/261 (8%) Query: 5 DAISTIEASDTIDELSSSLHRVVQNYGFSGFAFVDAGRPDL---DLPYHIGTFPDAWKRA 61 D +S ++ T+D+L ++L R V N GF ++VD R + +P++ + + Sbjct: 8 DMLSAFTSAGTLDDLKNALDRHVANLGFDAASYVDVRRLPIAEEPVPFYQTSLRKDFLET 67 Query: 62 YVQNEFVHADPALARSRRTNTPFSWSSLKLPE------RSGRKRPPEVKTMDAAREFGFK 115 Y+ + + DP + R+ TN PF+W+ + PE R + MD AR+FG++ Sbjct: 68 YLAEDLLGYDPVVNRAATTNAPFTWADV--PEFRPARGGGRGARNRARQVMDIARDFGYR 125 Query: 116 DGFVVPFHYRDRLGAVHSSSTVFFWEDEPRDFDKLFVCHRHE-LHLLMIYWVQRAMDIVN 174 GFV+P H D G S+ FW EP D+ HR L L ++ +RA+++ Sbjct: 126 QGFVLPLHAVDGHGFPASALISLFWRQEPDLLDR--PEHRPAWLRLAGSFYHERALNL-- 181 Query: 175 RDQRNAPTILKPADAAETIKLTGREKEVIAWAARGKTVADTAQILGISPETVEGFIKQAL 234 R + P ++ P+ LT RE+E + WA RGKT A+TA I+G+S TVE + + Sbjct: 182 RREVALPPLVPPS-------LTDRERECLVWACRGKTRAETADIMGVSDRTVEFHLTNTM 234 Query: 235 RKLEASNKTHGVAKSIALGII 255 RKL +K H +A ++ L +I Sbjct: 235 RKLGVHSKYHAIAVAVQLRLI 255 >ref|YP_001240084.1| putative transcriptional activator [Bradyrhizobium sp. BTAi1] gb|ABQ36178.1| putative transcriptional activator [Bradyrhizobium sp. BTAi1] Length = 213 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 81/233 (34%), Positives = 114/233 (48%), Gaps = 22/233 (9%) Query: 27 VQNYGFSGFAFVD-AGRPDLDLPYHIGTFPDAWKRAYVQNEFVHADPALARSRRTNTPFS 85 ++ YGF FA++ A R D D I T+P AW Y N + DP +ARS T PF+ Sbjct: 1 MEQYGFPCFAYLSFAPRGDEDDALAITTYPSAWVEQYRANRYDRIDPVIARSVATTLPFA 60 Query: 86 WSSLKLPERSGRKRPPEVKTMDAAREFGFKDGFVVPFHYRDRLGAVHSSSTVFFWEDEPR 145 WS+ + + R++ ++ A EF + G +P H DR G V +T+ E R Sbjct: 61 WSTDQFDALNNRQK----WFLEEASEFEIRHGVTIPIH--DRQGKV---ATLTLAACEAR 111 Query: 146 D-FDKLFVCHRHELHLLMIYWVQRAMDIVNRDQRNAPTILKPADAAETIKLTGREKEVIA 204 F+ +RHELHL+ IY R D+ PT P LT RE+ + Sbjct: 112 SAFEAQISKYRHELHLIAIYLYARLRDVT-------PTPASPLRPC----LTQRERICLQ 160 Query: 205 WAARGKTVADTAQILGISPETVEGFIKQALRKLEASNKTHGVAKSIALGIIDL 257 WAARGK+ DTA+I+ +S TV + A RKL + VAK +A II + Sbjct: 161 WAARGKSALDTAEIINVSRRTVVFHTQNAKRKLGVATVQQAVAKGLAYDIIGM 213 >ref|YP_001242900.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ38994.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 242 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 114/256 (44%), Gaps = 26/256 (10%) Query: 4 VDAISTIEASDTIDELSSSLHRVVQNYGFSGFAFVDAGRPDLDLPYHI--GTFPDAWKRA 61 +D + IEAS T + S +++ + GF + P L + I +P W Sbjct: 11 LDYVDAIEASKTSASVLSQFEKMIGDLGFHAYIMAGVPAPGQSLQHTILANGWPSEWFDL 70 Query: 62 YVQNEFVHADPALARSRRTNTPFSWSSLKLPERSGRKRPPEVKTMDAAREFGFKDGFVVP 121 Y + +F DP T PF+WS P + M AR+F +GF VP Sbjct: 71 YAREQFHRYDPIPRHCLSTLNPFAWSEAPYDRND---EPGAHEVMTRARDFRLNEGFCVP 127 Query: 122 FHYRDRLGAVHSSSTVFFWEDEPRDFDKLFVCHRHELHLLMIYWVQRAMDIVNRDQRNAP 181 HY D +GAV + + P L R LHL+ I+ R Sbjct: 128 IHYDDAVGAVSLAG------ERP----NLAPDARGALHLISIFTHSRLR----------- 166 Query: 182 TILKPADAAETIKLTGREKEVIAWAARGKTVADTAQILGISPETVEGFIKQALRKLEASN 241 + + ++ +L+ E EV++WAARGKT +TA+ILG+S V +++A RKLE N Sbjct: 167 ALARATSGGQSRRLSRIEAEVLSWAARGKTAWETARILGVSERNVRWHLEEAQRKLETKN 226 Query: 242 KTHGVAKSIALGIIDL 257 KT VA ++ G I + Sbjct: 227 KTATVATALVNGEITI 242