BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0143.0053.p (475 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001236219.1| DNA gyrase subunit B [Bradyrhizobium sp. BTA... 815 0.0 ref|YP_001202227.1| DNA gyrase subunit B [Bradyrhizobium sp. ORS... 811 0.0 ref|NP_767463.1| DNA gyrase subunit B [Bradyrhizobium japonicum ... 804 0.0 ref|YP_567145.1| DNA gyrase subunit B [Rhodopseudomonas palustri... 795 0.0 ref|YP_004106382.1| DNA gyrase subunit B [Rhodopseudomonas palus... 792 0.0 >ref|YP_001236219.1| DNA gyrase subunit B [Bradyrhizobium sp. BTAi1] gb|ABQ32313.1| DNA gyrase subunit B [Bradyrhizobium sp. BTAi1] Length = 812 Score = 815 bits (2104), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/476 (85%), Positives = 444/476 (93%), Gaps = 1/476 (0%) Query: 1 VLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEALAAWFEENPKEAKEIVGKVIQAAAA 60 VLSVKVPDPKFSSQTKDKLVSSEVRPVVENV+NEAL+AWFEE+P EAK +VGKVIQAAAA Sbjct: 337 VLSVKVPDPKFSSQTKDKLVSSEVRPVVENVINEALSAWFEEHPSEAKTVVGKVIQAAAA 396 Query: 61 REAARKARELTRKNPLS-VSSLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRNREFQ 119 REAARKARELTRKNPL+ ++SLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRNREFQ Sbjct: 397 REAARKARELTRKNPLNNIASLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRNREFQ 456 Query: 120 AVLPLRGKILNVERVRPDKMLSSEQIGTLITALGTGISDDFSVDKLRYHKIIVMTDADVD 179 AVLPLRGKILNVERVRPDKMLSSEQIGTLITALGTGISDDFS+DKLRYHKIIVMTDADVD Sbjct: 457 AVLPLRGKILNVERVRPDKMLSSEQIGTLITALGTGISDDFSIDKLRYHKIIVMTDADVD 516 Query: 180 GAHIRTLLLTFFYRQMRSIIDGGYLYIAQPPLYKVSRGKSEQYLKDERALEDYLISTGLD 239 GAHIRTLLLTFFYRQMR IID G+LYIAQPPLYKV+RGKSEQYLKDERALEDYLI TGLD Sbjct: 517 GAHIRTLLLTFFYRQMRQIIDRGHLYIAQPPLYKVTRGKSEQYLKDERALEDYLIGTGLD 576 Query: 240 ECVFKPASGDDRSGRDLLSLVEDARVIRSVLRNLHSRYNRAVIEQAAIAGVLNPRITGDI 299 +CVFK A G++R GRDLL+LVE+AR++R++LRNLHSRY+R V+EQAAIAGVL IT DI Sbjct: 577 DCVFKSAEGEERKGRDLLALVEEARIVRNILRNLHSRYDRTVVEQAAIAGVLRADITRDI 636 Query: 300 ATANSAAEYIAKRLDAVAEEVERGWIGTFTEGQGFQFERTVRGVREFAVIDDAFLGSADA 359 ATA++AAEYIAKRLD +A+EVERGWIG F EGQGF FERTVRGV++ AVIDDA L SADA Sbjct: 637 ATADAAAEYIAKRLDVLADEVERGWIGHFVEGQGFTFERTVRGVKDVAVIDDALLASADA 696 Query: 360 RKLDEYATELQEIYVRAGKLRRKDAEQIIHGPIDLFEAVTDAARKGISLQRYKGLGEMNP 419 RKLD+YA LQE Y + G LRR DA +IHGPIDLFEAVTDA RKGI++QRYKGLGEMNP Sbjct: 697 RKLDDYAARLQEAYAKPGFLRRGDAPTVIHGPIDLFEAVTDAGRKGIAMQRYKGLGEMNP 756 Query: 420 EQLWETTLDTEARSLLQVKIKEVDEADDIFTKLMGDVVEPRREFIQDNSLSATIDI 475 +QLWETTLDTEAR+LLQVK+KEVDEADDIFTKLMGDVVEPRREFIQDNSLSA +D+ Sbjct: 757 QQLWETTLDTEARTLLQVKVKEVDEADDIFTKLMGDVVEPRREFIQDNSLSANVDV 812 >ref|YP_001202227.1| DNA gyrase subunit B [Bradyrhizobium sp. ORS 278] emb|CAL73977.1| DNA gyrase subunit B [Bradyrhizobium sp. ORS 278] Length = 812 Score = 811 bits (2094), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/476 (84%), Positives = 444/476 (93%), Gaps = 1/476 (0%) Query: 1 VLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEALAAWFEENPKEAKEIVGKVIQAAAA 60 VLSVKVPDPKFSSQTKDKLVSSEVRPVVENV+NEAL+AWFEE+P EAK +VGKVIQAAAA Sbjct: 337 VLSVKVPDPKFSSQTKDKLVSSEVRPVVENVINEALSAWFEEHPSEAKTVVGKVIQAAAA 396 Query: 61 REAARKARELTRKNPLS-VSSLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRNREFQ 119 REAARKARELTRKNPL+ ++SLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRNREFQ Sbjct: 397 REAARKARELTRKNPLNNIASLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRNREFQ 456 Query: 120 AVLPLRGKILNVERVRPDKMLSSEQIGTLITALGTGISDDFSVDKLRYHKIIVMTDADVD 179 AVLPLRGKILNVERVRPDKMLSSEQIGTLITALGTGISDDFS+DKLRYHKIIVMTDADVD Sbjct: 457 AVLPLRGKILNVERVRPDKMLSSEQIGTLITALGTGISDDFSIDKLRYHKIIVMTDADVD 516 Query: 180 GAHIRTLLLTFFYRQMRSIIDGGYLYIAQPPLYKVSRGKSEQYLKDERALEDYLISTGLD 239 GAHIRTLLLTFFYRQMR IID G+LYIAQPPLYKV+RGKSEQYLKDERALEDYLI TGLD Sbjct: 517 GAHIRTLLLTFFYRQMRQIIDRGHLYIAQPPLYKVTRGKSEQYLKDERALEDYLIGTGLD 576 Query: 240 ECVFKPASGDDRSGRDLLSLVEDARVIRSVLRNLHSRYNRAVIEQAAIAGVLNPRITGDI 299 +CVF+ A G++R GRDLL+LVE+AR++R++LRNLHSRY+R V+EQAAIAGVL IT DI Sbjct: 577 DCVFRTADGEERKGRDLLALVEEARLVRNILRNLHSRYDRKVVEQAAIAGVLRGDITRDI 636 Query: 300 ATANSAAEYIAKRLDAVAEEVERGWIGTFTEGQGFQFERTVRGVREFAVIDDAFLGSADA 359 ATA++AAEYIAKRLD +AEEVERGWIG F EGQGF FERTVRGV++ AVIDDA L SADA Sbjct: 637 ATADAAAEYIAKRLDVLAEEVERGWIGHFVEGQGFTFERTVRGVKDVAVIDDALLASADA 696 Query: 360 RKLDEYATELQEIYVRAGKLRRKDAEQIIHGPIDLFEAVTDAARKGISLQRYKGLGEMNP 419 RKLD+YA LQ+ Y + G LRR D + +IHGP+DLFEAVTD+ RKGI++QRYKGLGEMNP Sbjct: 697 RKLDDYAARLQDAYAKPGALRRGDTQTVIHGPVDLFEAVTDSGRKGIAMQRYKGLGEMNP 756 Query: 420 EQLWETTLDTEARSLLQVKIKEVDEADDIFTKLMGDVVEPRREFIQDNSLSATIDI 475 +QLWETTLDTEAR+LLQVK+KEVDEADDIFTKLMGDVVEPRREFIQDNSLSA +D+ Sbjct: 757 QQLWETTLDTEARTLLQVKVKEVDEADDIFTKLMGDVVEPRREFIQDNSLSANVDV 812 >ref|NP_767463.1| DNA gyrase subunit B [Bradyrhizobium japonicum USDA 110] dbj|BAC46088.1| DNA gyrase subunit B [Bradyrhizobium japonicum USDA 110] Length = 811 Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/475 (84%), Positives = 438/475 (92%) Query: 1 VLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEALAAWFEENPKEAKEIVGKVIQAAAA 60 VLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEAL AWFEE+P EAK IVGKVIQAAAA Sbjct: 337 VLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEALQAWFEEHPSEAKMIVGKVIQAAAA 396 Query: 61 REAARKARELTRKNPLSVSSLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRNREFQA 120 REAARKARELTRK+PLSVSSLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRNREFQA Sbjct: 397 REAARKARELTRKSPLSVSSLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRNREFQA 456 Query: 121 VLPLRGKILNVERVRPDKMLSSEQIGTLITALGTGISDDFSVDKLRYHKIIVMTDADVDG 180 VLPLRGKILNVERVRPDKML SEQIGTLITALGTGISD+FS++KLRYHKIIVMTDADVDG Sbjct: 457 VLPLRGKILNVERVRPDKMLGSEQIGTLITALGTGISDEFSIEKLRYHKIIVMTDADVDG 516 Query: 181 AHIRTLLLTFFYRQMRSIIDGGYLYIAQPPLYKVSRGKSEQYLKDERALEDYLISTGLDE 240 AHIRTLLLTFFYRQMR IIDGGYLYIAQPPLYKVSRGKSEQYLKDERALEDYLI TGLD+ Sbjct: 517 AHIRTLLLTFFYRQMRDIIDGGYLYIAQPPLYKVSRGKSEQYLKDERALEDYLIETGLDD 576 Query: 241 CVFKPASGDDRSGRDLLSLVEDARVIRSVLRNLHSRYNRAVIEQAAIAGVLNPRITGDIA 300 C+F P +G DRSGRDL L++DARV+RS+LRNLH+RYNR V+EQAAI GVLN I GD Sbjct: 577 CIFTPGTGGDRSGRDLRGLIDDARVVRSILRNLHTRYNRKVVEQAAITGVLNKDIYGDPD 636 Query: 301 TANSAAEYIAKRLDAVAEEVERGWIGTFTEGQGFQFERTVRGVREFAVIDDAFLGSADAR 360 A +AA+Y+A RLD AE+VERGW+G + EGQGFQFERTVRGV++ A+ID AFLGSA+AR Sbjct: 637 KAAAAAQYVAGRLDKQAEDVERGWVGHYVEGQGFQFERTVRGVKDVAIIDSAFLGSAEAR 696 Query: 361 KLDEYATELQEIYVRAGKLRRKDAEQIIHGPIDLFEAVTDAARKGISLQRYKGLGEMNPE 420 KLDE+ +LQ++Y R G LRRKD E +HGP+DLFEAVTDA RKG++LQRYKGLGEMNPE Sbjct: 697 KLDEFTPKLQDVYARPGNLRRKDVEHTVHGPVDLFEAVTDAGRKGVTLQRYKGLGEMNPE 756 Query: 421 QLWETTLDTEARSLLQVKIKEVDEADDIFTKLMGDVVEPRREFIQDNSLSATIDI 475 QLWETTLDT ARSLLQVK+KEVDEADDIFTKLMGDVVEPRR+FIQ++SLSATIDI Sbjct: 757 QLWETTLDTNARSLLQVKVKEVDEADDIFTKLMGDVVEPRRDFIQEHSLSATIDI 811 >ref|YP_567145.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisB5] gb|ABE37244.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisB5] Length = 813 Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/477 (83%), Positives = 439/477 (92%), Gaps = 2/477 (0%) Query: 1 VLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEALAAWFEENPKEAKEIVGKVIQAAAA 60 VLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEALAAWFEE+P EAK IVGKVI+AAAA Sbjct: 337 VLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEALAAWFEEHPSEAKVIVGKVIEAAAA 396 Query: 61 REAARKARELTR-KNPLSVSSLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRNREFQ 119 REAARKARELTR K L ++SLPGKLADCQE+DP+KSELFIVEGDSAGGSAKQGRNREFQ Sbjct: 397 REAARKARELTRRKGALDIASLPGKLADCQERDPSKSELFIVEGDSAGGSAKQGRNREFQ 456 Query: 120 AVLPLRGKILNVERVRPDKMLSSEQIGTLITALGTGIS-DDFSVDKLRYHKIIVMTDADV 178 AVLPLRGKILNVER R DKML SEQIGTLITALGTGI DDF + KLRYHKII+MTDADV Sbjct: 457 AVLPLRGKILNVERARFDKMLGSEQIGTLITALGTGIGRDDFDLSKLRYHKIILMTDADV 516 Query: 179 DGAHIRTLLLTFFYRQMRSIIDGGYLYIAQPPLYKVSRGKSEQYLKDERALEDYLISTGL 238 DGAHIRTLLLTFF+RQM ++I+GG+LYIAQPPLYKV+RGKSEQYLKDERALEDYLISTGL Sbjct: 517 DGAHIRTLLLTFFFRQMPALIEGGFLYIAQPPLYKVTRGKSEQYLKDERALEDYLISTGL 576 Query: 239 DECVFKPASGDDRSGRDLLSLVEDARVIRSVLRNLHSRYNRAVIEQAAIAGVLNPRITGD 298 D+C+F+PASG++RSGRDLL+LVE+AR++R L NLHSRYNR+V+EQAAIAGVLNPRIT D Sbjct: 577 DDCIFRPASGEERSGRDLLALVENARIVRGTLHNLHSRYNRSVVEQAAIAGVLNPRITSD 636 Query: 299 IATANSAAEYIAKRLDAVAEEVERGWIGTFTEGQGFQFERTVRGVREFAVIDDAFLGSAD 358 I TAN AA YIA+RLDA+A+EVERGW+G FTEG+GF FERTVRGV++ A+IDDA LGSAD Sbjct: 637 IPTANEAAAYIARRLDALADEVERGWVGRFTEGEGFSFERTVRGVKDVAIIDDALLGSAD 696 Query: 359 ARKLDEYATELQEIYVRAGKLRRKDAEQIIHGPIDLFEAVTDAARKGISLQRYKGLGEMN 418 ARKLDEYA LQE Y R G LRRKD E IHGP+ LFEAVTDA RKG+SLQRYKGLGEMN Sbjct: 697 ARKLDEYAAILQEAYPRPGVLRRKDTETAIHGPVSLFEAVTDAGRKGVSLQRYKGLGEMN 756 Query: 419 PEQLWETTLDTEARSLLQVKIKEVDEADDIFTKLMGDVVEPRREFIQDNSLSATIDI 475 P QLWETTLDT ARSLLQVK++EVDEADD+FTKLMGDVVEPRREFIQ+NSLSAT+D+ Sbjct: 757 PSQLWETTLDTNARSLLQVKVREVDEADDLFTKLMGDVVEPRREFIQENSLSATVDV 813 >ref|YP_004106382.1| DNA gyrase subunit B [Rhodopseudomonas palustris DX-1] gb|ADU41649.1| DNA gyrase, B subunit [Rhodopseudomonas palustris DX-1] Length = 813 Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/477 (84%), Positives = 437/477 (91%), Gaps = 2/477 (0%) Query: 1 VLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEALAAWFEENPKEAKEIVGKVIQAAAA 60 VLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEALAAWFEE+P EAK IVGKVI+AAAA Sbjct: 337 VLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEALAAWFEEHPSEAKTIVGKVIEAAAA 396 Query: 61 REAARKARELTR-KNPLSVSSLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRNREFQ 119 REAARKARELTR K L ++SLPGKLADCQE+DP+KSELFIVEGDSAGGSAKQGRNREFQ Sbjct: 397 REAARKARELTRRKGALDIASLPGKLADCQERDPSKSELFIVEGDSAGGSAKQGRNREFQ 456 Query: 120 AVLPLRGKILNVERVRPDKMLSSEQIGTLITALGTGIS-DDFSVDKLRYHKIIVMTDADV 178 AVLPLRGKILNVER R DKMLSSEQIGTLITALGTGI DDF + KLRYHKII+MTDADV Sbjct: 457 AVLPLRGKILNVERARFDKMLSSEQIGTLITALGTGIGRDDFDIGKLRYHKIILMTDADV 516 Query: 179 DGAHIRTLLLTFFYRQMRSIIDGGYLYIAQPPLYKVSRGKSEQYLKDERALEDYLISTGL 238 DGAHIRTLLLTFF+RQM ++I+GGYLYIAQPPLYKV+RGKSEQYLKDERALEDYLI+TGL Sbjct: 517 DGAHIRTLLLTFFFRQMPALIEGGYLYIAQPPLYKVTRGKSEQYLKDERALEDYLIATGL 576 Query: 239 DECVFKPASGDDRSGRDLLSLVEDARVIRSVLRNLHSRYNRAVIEQAAIAGVLNPRITGD 298 D+CVFK A+G++R RDLL LVEDAR IRS L NLHSRYNR+V+EQAAIAGVL+PR+T D Sbjct: 577 DDCVFKLATGEERGRRDLLKLVEDARAIRSTLNNLHSRYNRSVVEQAAIAGVLSPRVTAD 636 Query: 299 IATANSAAEYIAKRLDAVAEEVERGWIGTFTEGQGFQFERTVRGVREFAVIDDAFLGSAD 358 IATAN AA YIA+RLDA+A+EVERGWIG FTEG+GF FERTVRGV+E A IDDA LGSAD Sbjct: 637 IATANEAAAYIARRLDALADEVERGWIGRFTEGEGFAFERTVRGVKEVAAIDDALLGSAD 696 Query: 359 ARKLDEYATELQEIYVRAGKLRRKDAEQIIHGPIDLFEAVTDAARKGISLQRYKGLGEMN 418 ARKLDEYA LQE+Y R G LRRKDAE IHGPI LFEAVTDA RKG++LQRYKGLGEMN Sbjct: 697 ARKLDEYAAVLQEVYPRPGVLRRKDAETAIHGPISLFEAVTDAGRKGVALQRYKGLGEMN 756 Query: 419 PEQLWETTLDTEARSLLQVKIKEVDEADDIFTKLMGDVVEPRREFIQDNSLSATIDI 475 P QLWETTLDT ARSLLQVK++EVDEADDIFTKLMGDVVEPRREFIQ+NSL AT+D+ Sbjct: 757 PGQLWETTLDTNARSLLQVKVREVDEADDIFTKLMGDVVEPRREFIQENSLHATVDV 813