BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0143.0052.p (405 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767463.1| DNA gyrase subunit B [Bradyrhizobium japonicum ... 589 e-166 ref|YP_001202227.1| DNA gyrase subunit B [Bradyrhizobium sp. ORS... 569 e-160 ref|YP_001236219.1| DNA gyrase subunit B [Bradyrhizobium sp. BTA... 564 e-158 ref|NP_945360.1| DNA gyrase subunit B [Rhodopseudomonas palustri... 560 e-157 ref|YP_001989042.1| DNA gyrase subunit B [Rhodopseudomonas palus... 560 e-157 >ref|NP_767463.1| DNA gyrase subunit B [Bradyrhizobium japonicum USDA 110] dbj|BAC46088.1| DNA gyrase subunit B [Bradyrhizobium japonicum USDA 110] Length = 811 Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust. Identities = 292/339 (86%), Positives = 304/339 (89%), Gaps = 1/339 (0%) Query: 1 MTEPARQTPAESEHPVPAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVD 60 MTEPARQTPAE+E P++YGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVD Sbjct: 1 MTEPARQTPAENEPSNPSDYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVD 60 Query: 61 NAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVGIHKEEGVSAAEVIMTQLHAGGKFD 120 NAIDEALAGHA+RV V LNADNSVTV DDGRGIPV IHK EG+SAAEVIMTQLHAGGKFD Sbjct: 61 NAIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFD 120 Query: 121 QNSYKVSGGLHGVGVSVVNALSSKLALRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGKRG 180 QNSYKVSGGLHGVGVSVVNALSSKL LRIWRD+KEHYIEFAHGDAVAPL VVGDAPGKRG Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLVVVGDAPGKRG 180 Query: 181 TEVTFLASVETFKNIEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKREEMHYSGGVE 240 TEVTFLAS +TFKNIEYDFATLEHRLRELAFLNSGVNI LSDMRHAVEKREEMHYSGGVE Sbjct: 181 TEVTFLASPDTFKNIEYDFATLEHRLRELAFLNSGVNIALSDMRHAVEKREEMHYSGGVE 240 Query: 241 EFVKYLDRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLA 300 EFVKYLDRNKKAIVPAPIMVR+EANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLA Sbjct: 241 EFVKYLDRNKKAIVPAPIMVRAEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLA 300 Query: 301 GFRGAALNRPPRTSLKALRHGYRTIFTNPNARICYSAVF 339 GFRG AL R +A + T + R +AV Sbjct: 301 GFRG-ALTRQVNGYAEANAKKEKIALTGDDCREGLTAVL 338 >ref|YP_001202227.1| DNA gyrase subunit B [Bradyrhizobium sp. ORS 278] emb|CAL73977.1| DNA gyrase subunit B [Bradyrhizobium sp. ORS 278] Length = 812 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 282/339 (83%), Positives = 299/339 (88%), Gaps = 1/339 (0%) Query: 1 MTEPARQTPAESEHPVPAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVD 60 MTEPARQT A++E EYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVD Sbjct: 1 MTEPARQTIADNEPATANEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVD 60 Query: 61 NAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVGIHKEEGVSAAEVIMTQLHAGGKFD 120 NAIDEALAG+A+RV V LNADNSVTV DDGRGIPVGIHK+EGVSAAEVIMTQLHAGGKFD Sbjct: 61 NAIDEALAGYATRVEVVLNADNSVTVRDDGRGIPVGIHKDEGVSAAEVIMTQLHAGGKFD 120 Query: 121 QNSYKVSGGLHGVGVSVVNALSSKLALRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGKRG 180 QNSYKVSGGLHGVGVSVVNALSSKL LRIWR+DKEH IEFAHGDAVAPL+VVG++ GKRG Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSSKLELRIWREDKEHLIEFAHGDAVAPLRVVGESKGKRG 180 Query: 181 TEVTFLASVETFKNIEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKREEMHYSGGVE 240 TEVTFLAS ETFK +EYD+ATLEHRLRELAFLNSGV+I+LSDMRHAVEKREEM YSGGVE Sbjct: 181 TEVTFLASTETFKMVEYDYATLEHRLRELAFLNSGVHIILSDMRHAVEKREEMFYSGGVE 240 Query: 241 EFVKYLDRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLA 300 EFVKYLDRNKKAIVP PIMVRSEANGI VEAALWWNDSYHENVLCFTNNIPQRDGGTHLA Sbjct: 241 EFVKYLDRNKKAIVPNPIMVRSEANGITVEAALWWNDSYHENVLCFTNNIPQRDGGTHLA 300 Query: 301 GFRGAALNRPPRTSLKALRHGYRTIFTNPNARICYSAVF 339 GFRG AL R +A + T + R +AV Sbjct: 301 GFRG-ALTRQVNGYAEANAKKEKIALTGDDCREGLTAVL 338 >ref|YP_001236219.1| DNA gyrase subunit B [Bradyrhizobium sp. BTAi1] gb|ABQ32313.1| DNA gyrase subunit B [Bradyrhizobium sp. BTAi1] Length = 812 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 274/305 (89%), Positives = 286/305 (93%) Query: 1 MTEPARQTPAESEHPVPAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVD 60 MTEPARQT A++E +YGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVD Sbjct: 1 MTEPARQTIADNEPATANDYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVD 60 Query: 61 NAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVGIHKEEGVSAAEVIMTQLHAGGKFD 120 NAIDEALAG+ASRV V LNADNSVTV DDGRGIPV IHK EGVSAAEVIMTQLHAGGKFD Sbjct: 61 NAIDEALAGYASRVEVVLNADNSVTVRDDGRGIPVDIHKGEGVSAAEVIMTQLHAGGKFD 120 Query: 121 QNSYKVSGGLHGVGVSVVNALSSKLALRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGKRG 180 QNSYKVSGGLHGVGVSVVNALSSKL LRIWR+DKEH IEFAHGDAVAPLKVVG+A G+RG Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSSKLQLRIWREDKEHLIEFAHGDAVAPLKVVGEAQGRRG 180 Query: 181 TEVTFLASVETFKNIEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKREEMHYSGGVE 240 TEVTFLAS ETFK +EYD+ATLEHRLRELAFLNSGV+IVLSDMRHAVEKREEM YSGGVE Sbjct: 181 TEVTFLASTETFKMVEYDYATLEHRLRELAFLNSGVHIVLSDMRHAVEKREEMFYSGGVE 240 Query: 241 EFVKYLDRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLA 300 EFV+YLDRNKKAIVP+PIMVRSE NGI VEAALWWNDSYHENVLCFTNNIPQRDGGTHLA Sbjct: 241 EFVRYLDRNKKAIVPSPIMVRSEVNGITVEAALWWNDSYHENVLCFTNNIPQRDGGTHLA 300 Query: 301 GFRGA 305 GFRGA Sbjct: 301 GFRGA 305 >ref|NP_945360.1| DNA gyrase subunit B [Rhodopseudomonas palustris CGA009] emb|CAE25448.1| DNA gyrase subunit B [Rhodopseudomonas palustris CGA009] Length = 813 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 280/339 (82%), Positives = 292/339 (86%), Gaps = 1/339 (0%) Query: 1 MTEPARQTPAESEHPVPAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVD 60 MTEPARQ AES HP PAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVD Sbjct: 1 MTEPARQPSAESVHPAPAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVD 60 Query: 61 NAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVGIHKEEGVSAAEVIMTQLHAGGKFD 120 NAIDEALAGHASRV V LNAD SVTV DDGRGIPV IHK EGVSAAEVIMTQLHAGGKFD Sbjct: 61 NAIDEALAGHASRVEVILNADGSVTVRDDGRGIPVDIHKGEGVSAAEVIMTQLHAGGKFD 120 Query: 121 QNSYKVSGGLHGVGVSVVNALSSKLALRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGKRG 180 QNSYKVSGGLHGVGVSVVNALSSKL LR+WR+DKEHYIEFAHGDAVAPLKVVGDA GKRG Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSSKLLLRVWRNDKEHYIEFAHGDAVAPLKVVGDANGKRG 180 Query: 181 TEVTFLASVETFKNIEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKREEMHYSGGVE 240 TEVTF AS ETF +IEYDFATLEHRLRELAFLNSGV IVLSDMRHAVEKREEM Y GGV Sbjct: 181 TEVTFYASAETFTHIEYDFATLEHRLRELAFLNSGVYIVLSDMRHAVEKREEMRYEGGVT 240 Query: 241 EFVKYLDRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLA 300 EFVKYLDRNKK IVP P+++ +E NGI VEAALWWND+YHENVLCFTNNIPQRDGGTHLA Sbjct: 241 EFVKYLDRNKKPIVPTPVVIGAELNGIMVEAALWWNDTYHENVLCFTNNIPQRDGGTHLA 300 Query: 301 GFRGAALNRPPRTSLKALRHGYRTIFTNPNARICYSAVF 339 GFR AAL R +A + T + R +AV Sbjct: 301 GFR-AALTRQITGYAEAGSKKEKVALTGDDCREGLTAVL 338 >ref|YP_001989042.1| DNA gyrase subunit B [Rhodopseudomonas palustris TIE-1] gb|ACE98566.1| DNA gyrase, B subunit [Rhodopseudomonas palustris TIE-1] Length = 813 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 280/339 (82%), Positives = 292/339 (86%), Gaps = 1/339 (0%) Query: 1 MTEPARQTPAESEHPVPAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVD 60 MTEPARQ AES HP PAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVD Sbjct: 1 MTEPARQPSAESVHPAPAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVD 60 Query: 61 NAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVGIHKEEGVSAAEVIMTQLHAGGKFD 120 NAIDEALAGHASRV V LNAD SVTV DDGRGIPV IHK EGVSAAEVIMTQLHAGGKFD Sbjct: 61 NAIDEALAGHASRVEVILNADGSVTVRDDGRGIPVDIHKGEGVSAAEVIMTQLHAGGKFD 120 Query: 121 QNSYKVSGGLHGVGVSVVNALSSKLALRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGKRG 180 QNSYKVSGGLHGVGVSVVNALSSKL LR+WR+DKEHYIEFAHGDAVAPLKVVGDA GKRG Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSSKLLLRVWRNDKEHYIEFAHGDAVAPLKVVGDANGKRG 180 Query: 181 TEVTFLASVETFKNIEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKREEMHYSGGVE 240 TEVTF AS ETF +IEYDFATLEHRLRELAFLNSGV IVLSDMRHAVEKREEM Y GGV Sbjct: 181 TEVTFYASAETFTHIEYDFATLEHRLRELAFLNSGVYIVLSDMRHAVEKREEMRYEGGVT 240 Query: 241 EFVKYLDRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLA 300 EFVKYLDRNKK IVP P+++ +E NGI VEAALWWND+YHENVLCFTNNIPQRDGGTHLA Sbjct: 241 EFVKYLDRNKKPIVPTPVVIGAELNGIMVEAALWWNDTYHENVLCFTNNIPQRDGGTHLA 300 Query: 301 GFRGAALNRPPRTSLKALRHGYRTIFTNPNARICYSAVF 339 GFR AAL R +A + T + R +AV Sbjct: 301 GFR-AALTRQITGYAEAGSKKEKVALTGDDCREGLTAVL 338