BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0143.0051.p (378 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767467.1| recombination protein F [Bradyrhizobium japonic... 651 0.0 ref|YP_001202226.1| recombination protein F [Bradyrhizobium sp. ... 642 0.0 ref|YP_001236215.1| recombination protein F [Bradyrhizobium sp. ... 630 e-178 ref|YP_483627.1| recombination protein F [Rhodopseudomonas palus... 630 e-178 ref|YP_567144.1| recombination protein F [Rhodopseudomonas palus... 627 e-178 >ref|NP_767467.1| recombination protein F [Bradyrhizobium japonicum USDA 110] dbj|BAC46092.1| DNA replication and repair protein [Bradyrhizobium japonicum USDA 110] Length = 378 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/377 (84%), Positives = 342/377 (90%) Query: 1 MTPSRIHRLSLTHFRNYRTATLQVAGDMVVLVGPNGAGKTNCMEAVSFLSPGRGLRRATL 60 MTPSRIHRL+LTHFRNYR A L+ A DMV LVGPNGAGKTNC+EA+SFLSPGRGLRRATL Sbjct: 1 MTPSRIHRLTLTHFRNYRAAGLETAADMVALVGPNGAGKTNCIEAISFLSPGRGLRRATL 60 Query: 61 EDIADNQGDGSWAVSAEVEGALGLATLGTGIDPPTGDAGSTRRCRIDREPVGSATAFGDH 120 ED+ADNQGDGSWAVSA+VEGALGLATLGTGI+PP DA +RRCRIDREPV SA AFGDH Sbjct: 61 EDVADNQGDGSWAVSAQVEGALGLATLGTGIEPPRADAAVSRRCRIDREPVNSAAAFGDH 120 Query: 121 LRIVWLTPAMDGLFMGAASERRRFFDRLVLAIDSEHSSRVSALERSLRSRNRLLEVRNYD 180 +R+VWLTPAMDGLFMGAASERRRFFDRLVLAIDSEHSSR++ALERSLRSRNRLLE RNYD Sbjct: 121 IRMVWLTPAMDGLFMGAASERRRFFDRLVLAIDSEHSSRINALERSLRSRNRLLETRNYD 180 Query: 181 DHWCDAIERETAELAVAVAASRGQTAAKLAVMLRERGAAXAFPPARIMFDGWMENALLQE 240 DHWCDAIERETAELAVAVAA+RGQTAA+L ML R A AFP A+I DGWMENALL+E Sbjct: 181 DHWCDAIERETAELAVAVAATRGQTAARLTGMLSARAQASAFPSAQIALDGWMENALLRE 240 Query: 241 PATAVEDRYREILRAGRPRDAAAGRTLDGPHLTDLQVVYAPKNMPARDASTGEQKALLIG 300 AT+VEDRYR+ILR RPRDA AGRT DGPHLTDLQV+YAPK MPARDASTGEQKALLIG Sbjct: 241 TATSVEDRYRQILRDNRPRDAIAGRTTDGPHLTDLQVIYAPKGMPARDASTGEQKALLIG 300 Query: 301 LVLAHATMVAEMTGIVPLLLLDEVVAHLDPNRRKALFDELAKLGAQVWMTGADPAAFLDI 360 LVLAHAT+VAEMTGIVPLLLLDEVVAHLDPNRR ALF+EL KLGAQVW+TGADPAAF +I Sbjct: 301 LVLAHATLVAEMTGIVPLLLLDEVVAHLDPNRRAALFEELKKLGAQVWLTGADPAAFAEI 360 Query: 361 GPRGEIFDVESGRATRR 377 G GE+FDVESGR + R Sbjct: 361 GAGGEVFDVESGRVSAR 377 >ref|YP_001202226.1| recombination protein F [Bradyrhizobium sp. ORS 278] emb|CAL73976.1| DNA replication and repair protein recF [Bradyrhizobium sp. ORS 278] Length = 378 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/377 (83%), Positives = 338/377 (89%) Query: 1 MTPSRIHRLSLTHFRNYRTATLQVAGDMVVLVGPNGAGKTNCMEAVSFLSPGRGLRRATL 60 MTPSRI+RLSLTHFR+YR A + V DMV LVG NGAGKTNC+EA+SF +PGRGLRRATL Sbjct: 1 MTPSRINRLSLTHFRSYRAAGVSVQADMVALVGANGAGKTNCLEAISFFAPGRGLRRATL 60 Query: 61 EDIADNQGDGSWAVSAEVEGALGLATLGTGIDPPTGDAGSTRRCRIDREPVGSATAFGDH 120 ED+ADNQGDGSWA+SAE+EGALGLAT GTGI+PP GDA +TRRCRIDREPVGSA AFGDH Sbjct: 61 EDVADNQGDGSWAISAEIEGALGLATFGTGIEPPRGDASTTRRCRIDREPVGSAAAFGDH 120 Query: 121 LRIVWLTPAMDGLFMGAASERRRFFDRLVLAIDSEHSSRVSALERSLRSRNRLLEVRNYD 180 +R+VWLTP+MDGLFMGAASERRRFFDRLVLAIDSEHSSRVSALERSLRSRNRLLEVRN+D Sbjct: 121 IRMVWLTPSMDGLFMGAASERRRFFDRLVLAIDSEHSSRVSALERSLRSRNRLLEVRNFD 180 Query: 181 DHWCDAIERETAELAVAVAASRGQTAAKLAVMLRERGAAXAFPPARIMFDGWMENALLQE 240 DHWCDAIERETAELAVAVAASRGQTA KLA MLR+RGAA AFP A I DGWMENALL E Sbjct: 181 DHWCDAIERETAELAVAVAASRGQTAVKLAAMLRQRGAASAFPSAEIALDGWMENALLTE 240 Query: 241 PATAVEDRYREILRAGRPRDAAAGRTLDGPHLTDLQVVYAPKNMPARDASTGEQKALLIG 300 PA AVEDRYR +LR R RDAAAGRTLDGPHLTDL V+YAPKNMPARDASTGEQKALLIG Sbjct: 241 PALAVEDRYRALLRDNRARDAAAGRTLDGPHLTDLHVIYAPKNMPARDASTGEQKALLIG 300 Query: 301 LVLAHATMVAEMTGIVPLLLLDEVVAHLDPNRRKALFDELAKLGAQVWMTGADPAAFLDI 360 L+LAHAT+VAE TGIVP+LLLDE+VAHLDP RR ALF EL LGAQVW+TGADPAAF ++ Sbjct: 301 LILAHATLVAETTGIVPMLLLDEIVAHLDPGRRTALFAELGTLGAQVWLTGADPAAFAEL 360 Query: 361 GPRGEIFDVESGRATRR 377 GEIFDVE GR T R Sbjct: 361 RELGEIFDVEGGRITAR 377 >ref|YP_001236215.1| recombination protein F [Bradyrhizobium sp. BTAi1] gb|ABQ32309.1| DNA replication and repair protein RecF [Bradyrhizobium sp. BTAi1] Length = 378 Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust. Identities = 307/377 (81%), Positives = 334/377 (88%) Query: 1 MTPSRIHRLSLTHFRNYRTATLQVAGDMVVLVGPNGAGKTNCMEAVSFLSPGRGLRRATL 60 MTPSRI+RL+LTHFR+YR A++ V DMV LVG NGAGKTNC+EA+SF +PGRGLRRATL Sbjct: 1 MTPSRINRLALTHFRSYRAASVSVQADMVALVGANGAGKTNCLEAISFFAPGRGLRRATL 60 Query: 61 EDIADNQGDGSWAVSAEVEGALGLATLGTGIDPPTGDAGSTRRCRIDREPVGSATAFGDH 120 ED+ADNQGDGSWA+SAE+EGALGLAT GTGI+PP DA RRCRIDREPVGSA AFGDH Sbjct: 61 EDVADNQGDGSWAISAEIEGALGLATFGTGIEPPRNDAAIVRRCRIDREPVGSAAAFGDH 120 Query: 121 LRIVWLTPAMDGLFMGAASERRRFFDRLVLAIDSEHSSRVSALERSLRSRNRLLEVRNYD 180 +R+VWLTPAMDGLFMGAASERRRFFDRLVLAIDSEHSSRVSALERSLRSRNRLLEVRN+D Sbjct: 121 IRMVWLTPAMDGLFMGAASERRRFFDRLVLAIDSEHSSRVSALERSLRSRNRLLEVRNFD 180 Query: 181 DHWCDAIERETAELAVAVAASRGQTAAKLAVMLRERGAAXAFPPARIMFDGWMENALLQE 240 DHWCDAIERETAELAVAVAASRGQTA KLA MLR+RG A AFP A I GWMENALL E Sbjct: 181 DHWCDAIERETAELAVAVAASRGQTAVKLAAMLRQRGQASAFPSAEIALAGWMENALLTE 240 Query: 241 PATAVEDRYREILRAGRPRDAAAGRTLDGPHLTDLQVVYAPKNMPARDASTGEQKALLIG 300 PA AVEDRYR +LR R RDAAAGRTLDGPHLTDL V+YAPK+MPARDASTGEQKALLIG Sbjct: 241 PALAVEDRYRALLRDNRARDAAAGRTLDGPHLTDLHVIYAPKSMPARDASTGEQKALLIG 300 Query: 301 LVLAHATMVAEMTGIVPLLLLDEVVAHLDPNRRKALFDELAKLGAQVWMTGADPAAFLDI 360 L+LAHAT+VAE TGIVP+LLLDE+VAHLDP RR ALF EL LGAQVW+TGADPAAF ++ Sbjct: 301 LILAHATLVAETTGIVPMLLLDEIVAHLDPGRRTALFAELGTLGAQVWLTGADPAAFAEL 360 Query: 361 GPRGEIFDVESGRATRR 377 GEIFDVE GR + R Sbjct: 361 RELGEIFDVEGGRISAR 377 >ref|YP_483627.1| recombination protein F [Rhodopseudomonas palustris HaA2] gb|ABD04716.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris HaA2] Length = 378 Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust. Identities = 313/373 (83%), Positives = 336/373 (90%) Query: 1 MTPSRIHRLSLTHFRNYRTATLQVAGDMVVLVGPNGAGKTNCMEAVSFLSPGRGLRRATL 60 MT SRI RL+LTHFRNYR A L + + VVLVG NGAGKTNC+EA+SFLSPGRGLRRATL Sbjct: 1 MTASRITRLTLTHFRNYRAAVLTTSAERVVLVGANGAGKTNCLEAISFLSPGRGLRRATL 60 Query: 61 EDIADNQGDGSWAVSAEVEGALGLATLGTGIDPPTGDAGSTRRCRIDREPVGSATAFGDH 120 +D+ADN+GDGSWAV+AEVEGALGLATLGTGIDPP DA ++RRCRIDREPVGSATAFGDH Sbjct: 61 DDVADNEGDGSWAVAAEVEGALGLATLGTGIDPPRADAATSRRCRIDREPVGSATAFGDH 120 Query: 121 LRIVWLTPAMDGLFMGAASERRRFFDRLVLAIDSEHSSRVSALERSLRSRNRLLEVRNYD 180 LR+VWLTPAMDGLFMGAASERRRFFDRLVLAIDS+HS RVSAL+RSLRSRNRLLEVR D Sbjct: 121 LRMVWLTPAMDGLFMGAASERRRFFDRLVLAIDSQHSGRVSALDRSLRSRNRLLEVRYPD 180 Query: 181 DHWCDAIERETAELAVAVAASRGQTAAKLAVMLRERGAAXAFPPARIMFDGWMENALLQE 240 HW DAIERETAELAVAVAA RGQTA +LA ML RGAA AFP A+IM DGWME+ALL E Sbjct: 181 AHWLDAIERETAELAVAVAAMRGQTAMRLAAMLDARGAASAFPSAKIMLDGWMESALLTE 240 Query: 241 PATAVEDRYREILRAGRPRDAAAGRTLDGPHLTDLQVVYAPKNMPARDASTGEQKALLIG 300 PATAVEDRYR ILR GRPRDAAAGRTLDGPHLTDL+VVYAPK MPARDASTGEQKALLIG Sbjct: 241 PATAVEDRYRTILREGRPRDAAAGRTLDGPHLTDLEVVYAPKAMPARDASTGEQKALLIG 300 Query: 301 LVLAHATMVAEMTGIVPLLLLDEVVAHLDPNRRKALFDELAKLGAQVWMTGADPAAFLDI 360 LVLAHA +V+EMTGI PLLLLDEVVAHLDP+RR ALF+ELAKLGAQVWMTGADPAAF +I Sbjct: 301 LVLAHAQLVSEMTGITPLLLLDEVVAHLDPSRRAALFEELAKLGAQVWMTGADPAAFAEI 360 Query: 361 GPRGEIFDVESGR 373 G EIF VESGR Sbjct: 361 GSGAEIFTVESGR 373 >ref|YP_567144.1| recombination protein F [Rhodopseudomonas palustris BisB5] gb|ABE37243.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris BisB5] Length = 378 Score = 627 bits (1617), Expect = e-178, Method: Compositional matrix adjust. Identities = 313/373 (83%), Positives = 335/373 (89%) Query: 1 MTPSRIHRLSLTHFRNYRTATLQVAGDMVVLVGPNGAGKTNCMEAVSFLSPGRGLRRATL 60 MT SRI RL+LTHFRNYR A L G+ VVLVG NGAGKTNC+EA+SFLSPGRGLRRATL Sbjct: 1 MTASRITRLTLTHFRNYRAAALHTRGERVVLVGANGAGKTNCLEAISFLSPGRGLRRATL 60 Query: 61 EDIADNQGDGSWAVSAEVEGALGLATLGTGIDPPTGDAGSTRRCRIDREPVGSATAFGDH 120 +D++D+QGDGSWAVSAEVEGALGLATLGTGIDPP DA +TRRCRIDREPVGSATAFGDH Sbjct: 61 DDVSDHQGDGSWAVSAEVEGALGLATLGTGIDPPRADAATTRRCRIDREPVGSATAFGDH 120 Query: 121 LRIVWLTPAMDGLFMGAASERRRFFDRLVLAIDSEHSSRVSALERSLRSRNRLLEVRNYD 180 LR+VWLTPAMDGLFMGAASERRRFFDRLVLAIDS+HSSRVSAL+RSLRSRNRLLE RN D Sbjct: 121 LRMVWLTPAMDGLFMGAASERRRFFDRLVLAIDSQHSSRVSALDRSLRSRNRLLEERNAD 180 Query: 181 DHWCDAIERETAELAVAVAASRGQTAAKLAVMLRERGAAXAFPPARIMFDGWMENALLQE 240 HW DAIERETAELAVAVAA RGQTAA+LA ML RGAA AFP A+IM DGWME+ALL E Sbjct: 181 RHWLDAIERETAELAVAVAAMRGQTAARLAAMLDARGAASAFPSAKIMLDGWMESALLTE 240 Query: 241 PATAVEDRYREILRAGRPRDAAAGRTLDGPHLTDLQVVYAPKNMPARDASTGEQKALLIG 300 PATAVEDRYR ILR GR RDAAAGRTLDGPHLTDLQV+YAPK MPARDASTGEQKALLIG Sbjct: 241 PATAVEDRYRAILRDGRLRDAAAGRTLDGPHLTDLQVIYAPKAMPARDASTGEQKALLIG 300 Query: 301 LVLAHATMVAEMTGIVPLLLLDEVVAHLDPNRRKALFDELAKLGAQVWMTGADPAAFLDI 360 LVLAHA +V+E+TGI PLLLLDEVVAHLDP RR+ALF EL +LGAQVWMTGADPA F +I Sbjct: 301 LVLAHAQLVSEITGITPLLLLDEVVAHLDPARRRALFAELERLGAQVWMTGADPAGFAEI 360 Query: 361 GPRGEIFDVESGR 373 GP EIF VESGR Sbjct: 361 GPDAEIFTVESGR 373