BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0143.0050.p (372 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_567143.1| DNA polymerase III subunit beta [Rhodopseudomon... 694 0.0 ref|YP_316622.1| DNA polymerase III subunit beta [Nitrobacter wi... 692 0.0 ref|ZP_01044954.1| DNA polymerase III subunit beta [Nitrobacter ... 690 0.0 ref|NP_945358.1| DNA polymerase III subunit beta [Rhodopseudomon... 685 0.0 ref|YP_483625.1| DNA polymerase III subunit beta [Rhodopseudomon... 684 0.0 >ref|YP_567143.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris BisB5] gb|ABE37242.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris BisB5] Length = 372 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/372 (91%), Positives = 359/372 (96%) Query: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLIRAEGAKLSLKATDLDLEVTETLAAE 60 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVL+RAE A+L+LKATDLDLEV ETL AE Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVIETLPAE 60 Query: 61 TGTAGSTTVPAHMFYDIVRKLPDGSQIVLEADGDRSVLAVRAGRSRFTLQTLPESDFPGL 120 T TAGSTTVPAHMFYDIVRKLPDGSQIVLE+DGDRSVLA+RAGRSRFTLQTLPESDFP L Sbjct: 61 TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSVLAIRAGRSRFTLQTLPESDFPDL 120 Query: 121 AAGDMTHSFSLPASDIKRLIDRTQFAISTEETRYYLNGIYLHAAGNAKAATLRGVATDGH 180 AAG+M+HSFSL ASD+KRLIDRTQFAISTEETRYYLNGIYLH AG+AKAATLR VATDGH Sbjct: 121 AAGEMSHSFSLAASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSAKAATLRAVATDGH 180 Query: 181 RLAQIDLALPKGATGMPGVIVPRKTVGEVQRLIEGDDAEISIELSDGKIRFTLGNVVLTS 240 RLAQ+DLA P GA+GMPGVIVPRKTVGEVQRLIE +DAEI+IELS GKIRFT+GNVVLTS Sbjct: 181 RLAQVDLAQPAGASGMPGVIVPRKTVGEVQRLIEDNDAEIAIELSAGKIRFTIGNVVLTS 240 Query: 241 KLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLSV 300 KLIDGTFPDYGRVIPQNNDKELVVDKK+FEAAVDRVSTISSERGRAVKLALSAGKLVLSV Sbjct: 241 KLIDGTFPDYGRVIPQNNDKELVVDKKEFEAAVDRVSTISSERGRAVKLALSAGKLVLSV 300 Query: 301 TNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEGEVAVLKLADPGSPTLVQDRDS 360 TNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEGEVAVLKLADPGSPTL+QDRD+ Sbjct: 301 TNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEGEVAVLKLADPGSPTLIQDRDT 360 Query: 361 KGALYVLMPMRV 372 K ALYVLMPMRV Sbjct: 361 KNALYVLMPMRV 372 >ref|YP_316622.1| DNA polymerase III subunit beta [Nitrobacter winogradskyi Nb-255] gb|ABA03270.1| DNA polymerase III, beta subunit [Nitrobacter winogradskyi Nb-255] Length = 372 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/372 (91%), Positives = 355/372 (95%) Query: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLIRAEGAKLSLKATDLDLEVTETLAAE 60 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVL+RAE AKLSLKATDLDLEVTETLAAE Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAKLSLKATDLDLEVTETLAAE 60 Query: 61 TGTAGSTTVPAHMFYDIVRKLPDGSQIVLEADGDRSVLAVRAGRSRFTLQTLPESDFPGL 120 TGT GSTTVPAHMFYDI+RKLPDG+QIVLE DGDRSVL +RAGRSRFTLQTLPE+DFP L Sbjct: 61 TGTVGSTTVPAHMFYDIIRKLPDGAQIVLEGDGDRSVLTIRAGRSRFTLQTLPENDFPDL 120 Query: 121 AAGDMTHSFSLPASDIKRLIDRTQFAISTEETRYYLNGIYLHAAGNAKAATLRGVATDGH 180 AAG+MTHSF+L A+D+KRLIDRTQFAISTEETRYYLNGIYLH AG A ATLRGVATDGH Sbjct: 121 AAGEMTHSFTLAAADLKRLIDRTQFAISTEETRYYLNGIYLHGAGTANNATLRGVATDGH 180 Query: 181 RLAQIDLALPKGATGMPGVIVPRKTVGEVQRLIEGDDAEISIELSDGKIRFTLGNVVLTS 240 RLAQ+DLALPKGA GMPGVI+PRKTVGEVQRLIE +AEI IELS GKIRFTLGNVVLTS Sbjct: 181 RLAQLDLALPKGAEGMPGVIIPRKTVGEVQRLIEDSEAEIGIELSQGKIRFTLGNVVLTS 240 Query: 241 KLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLSV 300 KLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLSV Sbjct: 241 KLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLSV 300 Query: 301 TNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEGEVAVLKLADPGSPTLVQDRDS 360 TNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEGE AVLKLADPGSPTLV DRDS Sbjct: 301 TNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEGEAAVLKLADPGSPTLVHDRDS 360 Query: 361 KGALYVLMPMRV 372 +GALYVLMPMRV Sbjct: 361 RGALYVLMPMRV 372 >ref|ZP_01044954.1| DNA polymerase III subunit beta [Nitrobacter sp. Nb-311A] gb|EAQ36959.1| DNA polymerase III subunit beta [Nitrobacter sp. Nb-311A] Length = 372 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/372 (91%), Positives = 358/372 (96%) Query: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLIRAEGAKLSLKATDLDLEVTETLAAE 60 MKVTVERAQLLKSL HVHRVVERRNTIPILGNVL+RAE AKLSLKATDLDLEVTETL+AE Sbjct: 1 MKVTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAKLSLKATDLDLEVTETLSAE 60 Query: 61 TGTAGSTTVPAHMFYDIVRKLPDGSQIVLEADGDRSVLAVRAGRSRFTLQTLPESDFPGL 120 TGT GST+VPAHMFYDIVRKLP+G+QI+LE DGDRSVLA+RAGRSRFTLQTLPE+DFP L Sbjct: 61 TGTIGSTSVPAHMFYDIVRKLPEGAQILLEGDGDRSVLAIRAGRSRFTLQTLPENDFPDL 120 Query: 121 AAGDMTHSFSLPASDIKRLIDRTQFAISTEETRYYLNGIYLHAAGNAKAATLRGVATDGH 180 AAG+MTH+F+L A+D+KRLIDRTQFAISTEETRYYLNGIYLH AGNAK+ATLRGVATDGH Sbjct: 121 AAGEMTHAFTLAAADLKRLIDRTQFAISTEETRYYLNGIYLHGAGNAKSATLRGVATDGH 180 Query: 181 RLAQIDLALPKGATGMPGVIVPRKTVGEVQRLIEGDDAEISIELSDGKIRFTLGNVVLTS 240 RLAQ+DLALPKGA GMPGVI+PRKTVGEVQRLIE +AEI IELS GKIRFT+GNVVLTS Sbjct: 181 RLAQLDLALPKGAEGMPGVIIPRKTVGEVQRLIEDSEAEIGIELSQGKIRFTIGNVVLTS 240 Query: 241 KLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLSV 300 KLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLSV Sbjct: 241 KLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLSV 300 Query: 301 TNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEGEVAVLKLADPGSPTLVQDRDS 360 TNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEGE AVLKLADPGSPTLV DRDS Sbjct: 301 TNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEGEAAVLKLADPGSPTLVHDRDS 360 Query: 361 KGALYVLMPMRV 372 +GALYVLMPMRV Sbjct: 361 RGALYVLMPMRV 372 >ref|NP_945358.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris CGA009] emb|CAE25446.1| DNA polymerase III beta subunit [Rhodopseudomonas palustris CGA009] Length = 372 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/372 (90%), Positives = 354/372 (95%) Query: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLIRAEGAKLSLKATDLDLEVTETLAAE 60 MKVTVERAQLLKSL HVHRVVERRNTIPILGNVL+RAE A+L+LKATDLDLEVTETL AE Sbjct: 1 MKVTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVTETLPAE 60 Query: 61 TGTAGSTTVPAHMFYDIVRKLPDGSQIVLEADGDRSVLAVRAGRSRFTLQTLPESDFPGL 120 T TAGSTTVPAHMFYDIVRKLPDGSQIVLE+DGDRSVLA+RAGRSRFTLQTLPESDFP L Sbjct: 61 TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSVLAIRAGRSRFTLQTLPESDFPDL 120 Query: 121 AAGDMTHSFSLPASDIKRLIDRTQFAISTEETRYYLNGIYLHAAGNAKAATLRGVATDGH 180 AAG+M+H+F LPASD+KRLIDRTQFAISTEETRYYLNGIYLH AG+ KA++LR VATDGH Sbjct: 121 AAGEMSHAFRLPASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSPKASSLRAVATDGH 180 Query: 181 RLAQIDLALPKGATGMPGVIVPRKTVGEVQRLIEGDDAEISIELSDGKIRFTLGNVVLTS 240 RLAQ+DL LP GA GMPGVIVPRKTVGEVQRLIE +AEI IELS GKIRFTLGNVVLTS Sbjct: 181 RLAQLDLTLPSGADGMPGVIVPRKTVGEVQRLIEDTEAEIGIELSTGKIRFTLGNVVLTS 240 Query: 241 KLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLSV 300 KLIDGTFPDYGRVIPQNNDKEL+VDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLSV Sbjct: 241 KLIDGTFPDYGRVIPQNNDKELLVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLSV 300 Query: 301 TNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEGEVAVLKLADPGSPTLVQDRDS 360 TNPDSGSATEELEVEYASD LDIGFNSRYLLDIAAQIEGEVAVLKLADPGSPTL+QDRDS Sbjct: 301 TNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIEGEVAVLKLADPGSPTLIQDRDS 360 Query: 361 KGALYVLMPMRV 372 K ALYVLMPMRV Sbjct: 361 KSALYVLMPMRV 372 >ref|YP_483625.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris HaA2] gb|ABD04714.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris HaA2] Length = 372 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/372 (91%), Positives = 353/372 (94%) Query: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLIRAEGAKLSLKATDLDLEVTETLAAE 60 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVL+RAE A+LSLKATDLDLEVTETL AE Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAQLSLKATDLDLEVTETLPAE 60 Query: 61 TGTAGSTTVPAHMFYDIVRKLPDGSQIVLEADGDRSVLAVRAGRSRFTLQTLPESDFPGL 120 T TAGSTTVPAHMFYDIVRKLPDGSQIVLE+DGDRSVLA+RAGRSRFTLQTLPESDFP L Sbjct: 61 TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSVLAIRAGRSRFTLQTLPESDFPDL 120 Query: 121 AAGDMTHSFSLPASDIKRLIDRTQFAISTEETRYYLNGIYLHAAGNAKAATLRGVATDGH 180 AAG+M+HSFSL ASD+KRLIDRTQFAISTEETRYYLNGIYLH AG+AK A LR VATDGH Sbjct: 121 AAGEMSHSFSLTASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSAKDAKLRAVATDGH 180 Query: 181 RLAQIDLALPKGATGMPGVIVPRKTVGEVQRLIEGDDAEISIELSDGKIRFTLGNVVLTS 240 RLAQ+DL P GA GMPGVIVPRKTVGEVQRLIE +DAEI +ELS GKIRFT+GNVVLTS Sbjct: 181 RLAQVDLTQPAGAAGMPGVIVPRKTVGEVQRLIEDNDAEIGLELSVGKIRFTIGNVVLTS 240 Query: 241 KLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLSV 300 KLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLSV Sbjct: 241 KLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLSV 300 Query: 301 TNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEGEVAVLKLADPGSPTLVQDRDS 360 TNPDSGSATEELEVEYASD LDIGFNSRYLLDIAAQIEGEVAVL+LADPGSPTL+QDRD Sbjct: 301 TNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIEGEVAVLRLADPGSPTLIQDRDK 360 Query: 361 KGALYVLMPMRV 372 K ALYVLMPMRV Sbjct: 361 KNALYVLMPMRV 372