BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0143.0047.p         (105 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001208939.1| putative signal peptide [Bradyrhizobium sp. ...   164   5e-39
ref|NP_767473.1| hypothetical protein blr0833 [Bradyrhizobium ja...   159   2e-37
ref|NP_950169.1| hypothetical protein RPA4835 [Rhodopseudomonas ...   155   2e-36
ref|YP_004111293.1| hypothetical protein Rpdx1_5020 [Rhodopseudo...   154   5e-36
ref|YP_579164.1| hypothetical protein Nham_4038 [Nitrobacter ham...   152   2e-35

>ref|YP_001208939.1| putative signal peptide [Bradyrhizobium sp. ORS 278]
 emb|CAL80724.1| conserved hypothetical protein; putative signal peptide
           [Bradyrhizobium sp. ORS 278]
          Length = 105

 Score =  164 bits (415), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 79/105 (75%), Positives = 94/105 (89%)

Query: 1   MIRGFFRLIGLLLLAGSFIFMVYDGARYVADQSLRFTQFGQFWNDIHQSSQQAFHAWVDR 60
           MIRGFFRL+GLLLLAGSFIF+VYDGAR+VADQ+L+FT+FGQ WND+HQSSQ AF AWV+ 
Sbjct: 1   MIRGFFRLVGLLLLAGSFIFLVYDGARWVADQTLQFTRFGQLWNDVHQSSQAAFKAWVEA 60

Query: 61  FAPWLWNDVIRLLLEQPVFAVLGIAGILLMILFRPRKPLIGYARD 105
            AP+LW+ + R  L+QPVFAVLG+ GILLM+LFRPR+PLIGY RD
Sbjct: 61  KAPFLWDWIARAFLDQPVFAVLGVIGILLMLLFRPRRPLIGYGRD 105


>ref|NP_767473.1| hypothetical protein blr0833 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46098.1| blr0833 [Bradyrhizobium japonicum USDA 110]
          Length = 105

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/105 (81%), Positives = 96/105 (91%)

Query: 1   MIRGFFRLIGLLLLAGSFIFMVYDGARYVADQSLRFTQFGQFWNDIHQSSQQAFHAWVDR 60
           MIRGFFRLIGLLLLAG FIFMVYDGAR+VADQ+L+FT+FGQFWNDI+Q+SQ AF  WV+ 
Sbjct: 1   MIRGFFRLIGLLLLAGGFIFMVYDGARWVADQTLKFTRFGQFWNDINQASQSAFRTWVEA 60

Query: 61  FAPWLWNDVIRLLLEQPVFAVLGIAGILLMILFRPRKPLIGYARD 105
            APWLW  VIRL+L+QPVFAVLGI GILLMILFRPRKPLIGY+RD
Sbjct: 61  KAPWLWTSVIRLVLDQPVFAVLGILGILLMILFRPRKPLIGYSRD 105


>ref|NP_950169.1| hypothetical protein RPA4835 [Rhodopseudomonas palustris CGA009]
 ref|YP_001994283.1| hypothetical protein Rpal_5322 [Rhodopseudomonas palustris TIE-1]
 emb|CAE30275.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
 gb|ACF03808.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 105

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/105 (68%), Positives = 87/105 (82%)

Query: 1   MIRGFFRLIGLLLLAGSFIFMVYDGARYVADQSLRFTQFGQFWNDIHQSSQQAFHAWVDR 60
           MIRGFFRLIGLL L G FIF+VYDGAR VAD S+++T+ G FWNDIHQ+SQQ+F  WV++
Sbjct: 1   MIRGFFRLIGLLFLTGGFIFLVYDGARSVADNSVQWTKLGDFWNDIHQASQQSFRDWVEQ 60

Query: 61  FAPWLWNDVIRLLLEQPVFAVLGIAGILLMILFRPRKPLIGYARD 105
            APWLW  V + +L QP FAVLG+ G+ L++LFRPRKPLIGYARD
Sbjct: 61  TAPWLWTHVAKFVLTQPTFAVLGVIGLALLLLFRPRKPLIGYARD 105


>ref|YP_004111293.1| hypothetical protein Rpdx1_5020 [Rhodopseudomonas palustris DX-1]
 gb|ADU46560.1| hypothetical protein Rpdx1_5020 [Rhodopseudomonas palustris DX-1]
          Length = 105

 Score =  154 bits (389), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 71/105 (67%), Positives = 87/105 (82%)

Query: 1   MIRGFFRLIGLLLLAGSFIFMVYDGARYVADQSLRFTQFGQFWNDIHQSSQQAFHAWVDR 60
           MIRGFFRLIGLL L G FIF+VYDGAR VAD S+++T+ G FWNDIHQ+SQQ+F  W+++
Sbjct: 1   MIRGFFRLIGLLFLTGGFIFLVYDGARSVADNSVQWTKLGDFWNDIHQASQQSFRDWLEQ 60

Query: 61  FAPWLWNDVIRLLLEQPVFAVLGIAGILLMILFRPRKPLIGYARD 105
            APWLW  + + +L QP FAVLG+ G+ LM+LFRPRKPLIGYARD
Sbjct: 61  TAPWLWTHLAKFVLAQPTFAVLGVIGLALMLLFRPRKPLIGYARD 105


>ref|YP_579164.1| hypothetical protein Nham_4038 [Nitrobacter hamburgensis X14]
 gb|ABE64704.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 104

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/105 (66%), Positives = 88/105 (83%), Gaps = 1/105 (0%)

Query: 1   MIRGFFRLIGLLLLAGSFIFMVYDGARYVADQSLRFTQFGQFWNDIHQSSQQAFHAWVDR 60
           MIRG FR IGLLLLAG F+F+VYDGAR +ADQ++R T  G+FWNDIHQ+SQQA    ++ 
Sbjct: 1   MIRGIFRSIGLLLLAGGFVFLVYDGARSIADQTVRLTTLGEFWNDIHQASQQAVRTQIEA 60

Query: 61  FAPWLWNDVIRLLLEQPVFAVLGIAGILLMILFRPRKPLIGYARD 105
            APW+W D+++L+L QP FAVL +AGILLM+LFRPR+PLIGY+RD
Sbjct: 61  SAPWMW-DLLKLVLNQPAFAVLAVAGILLMLLFRPRRPLIGYSRD 104