BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0143.0043.p         (111 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_488301.1| hypothetical protein RPB_4707 [Rhodopseudomonas...   136   1e-30
ref|YP_579162.1| hypothetical protein Nham_4036 [Nitrobacter ham...   132   2e-29
ref|YP_571534.1| hypothetical protein RPD_4417 [Rhodopseudomonas...   130   9e-29
ref|NP_767478.1| hypothetical protein bll0838 [Bradyrhizobium ja...   129   1e-28
ref|YP_783815.1| hypothetical protein RPE_4916 [Rhodopseudomonas...   125   2e-27

>ref|YP_488301.1| hypothetical protein RPB_4707 [Rhodopseudomonas palustris HaA2]
 gb|ABD09390.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 138

 Score =  136 bits (342), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/112 (61%), Positives = 79/112 (70%), Gaps = 3/112 (2%)

Query: 2   KTIAVALLLIAA---ATEANAQKLPFVTAPSTFTATLSNTTPLAFGMGVADAQRALGTPL 58
           + +AV ++LIAA   A  A+AQ+   V     F ATLSNTTPLAFGM    A+RALG PL
Sbjct: 26  RAMAVLVMLIAASSLARPASAQQPAAVIVAPPFIATLSNTTPLAFGMDALQAERALGMPL 85

Query: 59  TYVSGRPGNEIFLTFRDLGGSGLFPHHDRLFLQFRKHRLTGWKADWGENWMW 110
            YVSGRPG+EIFL  R  GGSG F   DRL+LQFR+ RLTGWK DWG NWMW
Sbjct: 86  NYVSGRPGDEIFLAIRTHGGSGFFNRRDRLYLQFRRGRLTGWKGDWGRNWMW 137


>ref|YP_579162.1| hypothetical protein Nham_4036 [Nitrobacter hamburgensis X14]
 gb|ABE64702.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 119

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/110 (61%), Positives = 74/110 (67%)

Query: 2   KTIAVALLLIAAATEANAQKLPFVTAPSTFTATLSNTTPLAFGMGVADAQRALGTPLTYV 61
            T AVAL     A     Q L   +  S+FTATLSN TPLAFGM  A A  ALG PL Y+
Sbjct: 10  STCAVALSAAWIAPGHAQQALVDPSHWSSFTATLSNNTPLAFGMDEATAAGALGVPLDYI 69

Query: 62  SGRPGNEIFLTFRDLGGSGLFPHHDRLFLQFRKHRLTGWKADWGENWMWR 111
           SGRPGNE+FL FR  GGSG F   DRL+LQFR+ RLTGWK DWG NWMWR
Sbjct: 70  SGRPGNEVFLAFRSYGGSGFFNRKDRLYLQFRRGRLTGWKGDWGRNWMWR 119


>ref|YP_571534.1| hypothetical protein RPD_4417 [Rhodopseudomonas palustris BisB5]
 gb|ABE41633.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 133

 Score =  130 bits (326), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 78/113 (69%), Gaps = 2/113 (1%)

Query: 1   MKTIAVALLLIAAATEA--NAQKLPFVTAPSTFTATLSNTTPLAFGMGVADAQRALGTPL 58
           M  + +AL++ A+ + A  +AQ+         FTATLSNT PLAFGM   +A+RALG PL
Sbjct: 21  MALVRLALIVAASLSAAPVSAQQFAPAIVTPPFTATLSNTAPLAFGMDAFEAERALGMPL 80

Query: 59  TYVSGRPGNEIFLTFRDLGGSGLFPHHDRLFLQFRKHRLTGWKADWGENWMWR 111
            YVSGRPG+E+FL  R  GGSG F   DRL+LQFR  RLTGWK DWG NWMW+
Sbjct: 81  NYVSGRPGDEVFLVIRTAGGSGFFNRRDRLYLQFRHGRLTGWKGDWGRNWMWQ 133


>ref|NP_767478.1| hypothetical protein bll0838 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46103.1| bll0838 [Bradyrhizobium japonicum USDA 110]
          Length = 113

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/112 (57%), Positives = 73/112 (65%), Gaps = 2/112 (1%)

Query: 1   MKTIAVALLLIAAATEANAQKLPFVTAP--STFTATLSNTTPLAFGMGVADAQRALGTPL 58
           MK   +   ++A    A  Q  PF T P    F ATLSN TPLAFGM    + RALG PL
Sbjct: 1   MKQAMLVAGVVATLFSAPVQAEPFGTVPPRRPFVATLSNNTPLAFGMDAEQSARALGQPL 60

Query: 59  TYVSGRPGNEIFLTFRDLGGSGLFPHHDRLFLQFRKHRLTGWKADWGENWMW 110
            YV GRPGNEI+L  R++GGSGL P+  RLFLQFR  RL GWK D+GENWMW
Sbjct: 61  QYVRGRPGNEIYLALRNIGGSGLIPYRHRLFLQFRHGRLAGWKEDYGENWMW 112


>ref|YP_783815.1| hypothetical protein RPE_4916 [Rhodopseudomonas palustris BisA53]
 gb|ABJ08835.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
          Length = 123

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/109 (58%), Positives = 74/109 (67%)

Query: 3   TIAVALLLIAAATEANAQKLPFVTAPSTFTATLSNTTPLAFGMGVADAQRALGTPLTYVS 62
           T+ +A+ +   +  A AQ+   V AP  F  TLSNTTPL FGM    A RALGTPL YV+
Sbjct: 15  TVVLAMAIAFGSASAAAQQPALVAAPVPFPMTLSNTTPLVFGMDADTATRALGTPLYYVN 74

Query: 63  GRPGNEIFLTFRDLGGSGLFPHHDRLFLQFRKHRLTGWKADWGENWMWR 111
           G PG+E+ L FR  GGSGL P  DRL+LQFR  RLTGWK DWG NWMWR
Sbjct: 75  GHPGDEVLLAFRTHGGSGLLPRRDRLYLQFRAGRLTGWKGDWGHNWMWR 123