BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0143.0033.p (536 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768089.1| ABC transporter permease protein [Bradyrhizobiu... 856 0.0 ref|YP_001242808.1| branched chain amino acid ABC transporter pe... 848 0.0 ref|YP_001203183.1| branched chain amino acid ABC transporter pe... 848 0.0 ref|YP_533555.1| inner-membrane translocator [Rhodopseudomonas p... 832 0.0 ref|YP_001993161.1| urea ABC transporter permease [Rhodopseudomo... 819 0.0 >ref|NP_768089.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46714.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 535 Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/513 (85%), Positives = 471/513 (91%) Query: 24 MPALAGPFEDSVAKFANDEFSDTEAAIGEVAASGNALASPIISALQDGRLSADPDSKKVF 83 +PA AGPFED+VAKFAND++SDTE AIG VA+SGN LA PIISALQDGRL ADPDSKKV+ Sbjct: 23 LPAFAGPFEDAVAKFANDDYSDTEEAIGVVASSGNPLAFPIISALQDGRLMADPDSKKVY 82 Query: 84 ITQADGKIVDATTGAAVDKLPDNAAAVRLNNRLRRTVEAALGGLTLLSPDPAKRLAAAQS 143 +T DGK +D TG AV +PD+A+AVRLNNRLRR+V+AA+G LTL SPD RL AAQS Sbjct: 83 VTGTDGKSIDVATGQAVASVPDSASAVRLNNRLRRSVDAAVGSLTLQSPDVGTRLQAAQS 142 Query: 144 VFKSHEENLLPTVEGALAKESVKSIKQAFAEARAAIILFKSDASDSDKLDAVAVVKARGD 203 VFKSHEE L V+ ALAKE+ KS+K EARAAI+LFK DA++ +KL+AVA ++ARGD Sbjct: 143 VFKSHEETALEAVDAALAKETNKSVKATLGEARAAILLFKPDATEVEKLEAVATLRARGD 202 Query: 204 QEALALLTGLGDQPPLVAQAAATAVTSIQSNLAMWSMVQNAWYGLSLGSVLLLAAIGLAI 263 QEA+ALLTG+GDQP V +AAA+A+ SIQS+LA+WS VQNAWYGLSLGSVLLLAAIGLAI Sbjct: 203 QEAMALLTGMGDQPASVTKAAASAIGSIQSSLAVWSTVQNAWYGLSLGSVLLLAAIGLAI 262 Query: 264 TFGVMGVINMAHGEMVMLGAYTTFVVQEVIRTRYPALFDYSLLIAVPLAFLVAGLIGVVI 323 TFGVMGVINMAHGEMVMLGAYTTFVVQEVIRTRYP LFDYSLLIAVPLAFLVAG IGV+I Sbjct: 263 TFGVMGVINMAHGEMVMLGAYTTFVVQEVIRTRYPGLFDYSLLIAVPLAFLVAGAIGVLI 322 Query: 324 ERTIIRFLYGRPLETLLATWGLSLVLQQAVRTAFGPTNREVGNPSWMSGAFELGQITITY 383 ER+IIRFLYGRPLETLLATWGLSLVLQQAVRT FGPTNREVGNPSWMSGAFELGQITITY Sbjct: 323 ERSIIRFLYGRPLETLLATWGLSLVLQQAVRTMFGPTNREVGNPSWMSGAFELGQITITY 382 Query: 384 NRLWILCFTLAVFAILLAMLRYTALGLEMRAVTQNRRMAASMGIATSRVDALTFGLGSGI 443 NRLWILCFTLAVFAILLAMLRYTALGLEMRAVTQNRRMAASMGIATSRVDALTFGLGSGI Sbjct: 383 NRLWILCFTLAVFAILLAMLRYTALGLEMRAVTQNRRMAASMGIATSRVDALTFGLGSGI 442 Query: 444 AGIAGVALSQIDNVSPNLGQSYIIDSFMGVVFGGVGNLWGTLVGAFTLGIANKFLEPVAG 503 AGIAGVALSQIDNVSPNLGQSYIIDSFM VVFGGVGNLWGTLVGAFTLGIANKFLEPVAG Sbjct: 443 AGIAGVALSQIDNVSPNLGQSYIIDSFMVVVFGGVGNLWGTLVGAFTLGIANKFLEPVAG 502 Query: 504 AVLGKIAILVLIILFIQKRPRGLFALKGRAVEA 536 AVLGKIAILVLIILFIQKRPRGLFALKGRAVEA Sbjct: 503 AVLGKIAILVLIILFIQKRPRGLFALKGRAVEA 535 >ref|YP_001242808.1| branched chain amino acid ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ38902.1| amino acid/amide ABC transporter membrane protein 1, HAAT family [Bradyrhizobium sp. BTAi1] Length = 520 Score = 848 bits (2192), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/515 (86%), Positives = 478/515 (92%), Gaps = 2/515 (0%) Query: 24 MPALAGPFEDSVAKFANDEFSDTEAAIGEVAASGNALASPIISALQDGRLSADPDSKKVF 83 +PA A FE+SVAKFAND+FSDT+ A+GE+A SGN LA PIISALQD RL D ++KKV+ Sbjct: 6 VPAFAASFEESVAKFANDDFSDTDDAVGEIAVSGNPLAYPIISALQDERLMFDAETKKVY 65 Query: 84 ITQADGKIVDATTGAAVDKLPDNAAAVRLNNRLRRTVEAALGGLTLLSPDPAKRLAAAQS 143 + QADGKI+DA TGAAVDKLPDNAAAV LNNRLRR+V+AALGGLTLLSPD RL+AA+S Sbjct: 66 VKQADGKIIDAATGAAVDKLPDNAAAVSLNNRLRRSVDAALGGLTLLSPDVITRLSAAKS 125 Query: 144 VFKSHEENLLPTVEGALAKESVKSIKQAFAEARAAIILFKSDASDSDKLDAVAVVKARGD 203 VFKSH+E LPTV+ ALAKE+ +S+KQA EARAAI+LFKSDAS+ DKL+AVA ++AR D Sbjct: 126 VFKSHDEATLPTVDSALAKETNRSVKQALTEARAAILLFKSDASEVDKLEAVATIRARSD 185 Query: 204 QEALALLTGL--GDQPPLVAQAAATAVTSIQSNLAMWSMVQNAWYGLSLGSVLLLAAIGL 261 QEALALLT + GDQP VA+AAA A+ +IQS+LA+WS VQNAWYGLSLGSVLLLAAIGL Sbjct: 186 QEALALLTEISGGDQPASVAKAAAGAIAAIQSSLAIWSGVQNAWYGLSLGSVLLLAAIGL 245 Query: 262 AITFGVMGVINMAHGEMVMLGAYTTFVVQEVIRTRYPALFDYSLLIAVPLAFLVAGLIGV 321 AITFGVMGVINMAHGEMVMLGAYTTFVVQEVIRTRYPALFDYSLLIA PLAFLVAG IGV Sbjct: 246 AITFGVMGVINMAHGEMVMLGAYTTFVVQEVIRTRYPALFDYSLLIAAPLAFLVAGAIGV 305 Query: 322 VIERTIIRFLYGRPLETLLATWGLSLVLQQAVRTAFGPTNREVGNPSWMSGAFELGQITI 381 +IERTIIRFLYGRPLETLLATWGLSL+LQQAVR+AFGPTNREVGNPSWMSGAFELGQITI Sbjct: 306 LIERTIIRFLYGRPLETLLATWGLSLILQQAVRSAFGPTNREVGNPSWMSGAFELGQITI 365 Query: 382 TYNRLWILCFTLAVFAILLAMLRYTALGLEMRAVTQNRRMAASMGIATSRVDALTFGLGS 441 TYNRLWILCFT+AVFAILLAMLRYTALGLEMRAVTQNRRMAASMGIATSRVDALTFGLGS Sbjct: 366 TYNRLWILCFTMAVFAILLAMLRYTALGLEMRAVTQNRRMAASMGIATSRVDALTFGLGS 425 Query: 442 GIAGIAGVALSQIDNVSPNLGQSYIIDSFMGVVFGGVGNLWGTLVGAFTLGIANKFLEPV 501 GIAGIAGVALSQIDNVSPNLGQSYIIDSFM VVFGGVGNLWGTLVGAFTLGIANKFLEPV Sbjct: 426 GIAGIAGVALSQIDNVSPNLGQSYIIDSFMVVVFGGVGNLWGTLVGAFTLGIANKFLEPV 485 Query: 502 AGAVLGKIAILVLIILFIQKRPRGLFALKGRAVEA 536 AGAVLGKIAILVLIILFIQKRPRGLFALKGRAVEA Sbjct: 486 AGAVLGKIAILVLIILFIQKRPRGLFALKGRAVEA 520 >ref|YP_001203183.1| branched chain amino acid ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL74946.1| Putative Branched-chain amino acid ABC transporter (permease protein) [Bradyrhizobium sp. ORS 278] Length = 520 Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/514 (86%), Positives = 477/514 (92%), Gaps = 2/514 (0%) Query: 25 PALAGPFEDSVAKFANDEFSDTEAAIGEVAASGNALASPIISALQDGRLSADPDSKKVFI 84 PA A FE+SVAKFAND+FSDT+ A+GE+A SGN LA PIISALQD RL D ++KKV++ Sbjct: 7 PAFAASFEESVAKFANDDFSDTDDAVGEIAVSGNPLAYPIISALQDERLMFDAETKKVYV 66 Query: 85 TQADGKIVDATTGAAVDKLPDNAAAVRLNNRLRRTVEAALGGLTLLSPDPAKRLAAAQSV 144 Q DGKI+DA TGAAVDKLPDNAAAV LNNRLRRTV+AALGGLTLLSPD RL AA+SV Sbjct: 67 KQTDGKIIDAATGAAVDKLPDNAAAVSLNNRLRRTVDAALGGLTLLSPDTNTRLTAAKSV 126 Query: 145 FKSHEENLLPTVEGALAKESVKSIKQAFAEARAAIILFKSDASDSDKLDAVAVVKARGDQ 204 FKSH+E L TVE ALAKE+ +++KQA AEARAAI+LFKSDAS+ DKLDAVA +++RGDQ Sbjct: 127 FKSHDEATLSTVESALAKETNRTVKQALAEARAAILLFKSDASEVDKLDAVATIRSRGDQ 186 Query: 205 EALALLTGL--GDQPPLVAQAAATAVTSIQSNLAMWSMVQNAWYGLSLGSVLLLAAIGLA 262 EALALLT + GDQP VA+AAA+A++SIQ +LA+WS VQNAWYGLSLGSVLLLAAIGLA Sbjct: 187 EALALLTEISGGDQPANVARAAASAISSIQGSLAIWSGVQNAWYGLSLGSVLLLAAIGLA 246 Query: 263 ITFGVMGVINMAHGEMVMLGAYTTFVVQEVIRTRYPALFDYSLLIAVPLAFLVAGLIGVV 322 ITFGVMGVINMAHGEMVMLGAYTTFVVQEVIRTRYPALFDYSLLIA PLAFLVAG IGV+ Sbjct: 247 ITFGVMGVINMAHGEMVMLGAYTTFVVQEVIRTRYPALFDYSLLIAAPLAFLVAGAIGVL 306 Query: 323 IERTIIRFLYGRPLETLLATWGLSLVLQQAVRTAFGPTNREVGNPSWMSGAFELGQITIT 382 IERTIIRFLYGRPLETLLATWGLSL+LQQAVR+AFGPTNREVGNPSWMSGAFELGQITIT Sbjct: 307 IERTIIRFLYGRPLETLLATWGLSLILQQAVRSAFGPTNREVGNPSWMSGAFELGQITIT 366 Query: 383 YNRLWILCFTLAVFAILLAMLRYTALGLEMRAVTQNRRMAASMGIATSRVDALTFGLGSG 442 YNRLWILCFT+AVFAILLAMLRYTALGLEMRAVTQNRRMAASMGIATSRVDALTFGLGSG Sbjct: 367 YNRLWILCFTMAVFAILLAMLRYTALGLEMRAVTQNRRMAASMGIATSRVDALTFGLGSG 426 Query: 443 IAGIAGVALSQIDNVSPNLGQSYIIDSFMGVVFGGVGNLWGTLVGAFTLGIANKFLEPVA 502 IAGIAGVALSQIDNVSPNLGQSYIIDSFM VVFGGVGNLWGTLVGAFTLGIANKFLEPVA Sbjct: 427 IAGIAGVALSQIDNVSPNLGQSYIIDSFMVVVFGGVGNLWGTLVGAFTLGIANKFLEPVA 486 Query: 503 GAVLGKIAILVLIILFIQKRPRGLFALKGRAVEA 536 GAVLGKIAILVLIILFIQKRPRGLFALKGRAVEA Sbjct: 487 GAVLGKIAILVLIILFIQKRPRGLFALKGRAVEA 520 >ref|YP_533555.1| inner-membrane translocator [Rhodopseudomonas palustris BisB18] gb|ABD89236.1| inner-membrane translocator [Rhodopseudomonas palustris BisB18] Length = 537 Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/531 (82%), Positives = 475/531 (89%), Gaps = 1/531 (0%) Query: 7 DRFRTLFLSILLLSCLIMPALAGPFEDSVAKFANDEFSDTEAAIGEVAASGNALASPIIS 66 DR R + ++++ +PALAGPFED+VA+FAND FSDTE AIG +A G+ A II Sbjct: 7 DRVRAFAFAAVVIAASAIPALAGPFEDAVAQFANDSFSDTEEAIGVIATGGHPQAYAIIG 66 Query: 67 ALQDGRLSADPDSKKVFITQADGKIVDATTGAAVDKLPDNAAAVRLNNRLRRTVEAALGG 126 ALQ GRL ADP+SK+VF+TQ DG +DA TG AV LPD AAAVRLNNRLRRTVEAALGG Sbjct: 67 ALQAGRLMADPESKRVFVTQPDGAFIDAATGEAVQNLPDGAAAVRLNNRLRRTVEAALGG 126 Query: 127 LTLLSPDPAKRLAAAQSVFKSHEENLLPTVEGALAKESVKSIKQAFAEARAAIILFKSDA 186 LTL SPD AKR+ AAQSVFK+H+E +LP V+GALAKE+ + K AF EARAAI+LFK+DA Sbjct: 127 LTLQSPDLAKRIQAAQSVFKTHDEAMLPMVDGALAKETNPAAKLAFGEARAAILLFKADA 186 Query: 187 SDSDKLDAVAVVKARGDQEALALLTGL-GDQPPLVAQAAATAVTSIQSNLAMWSMVQNAW 245 +D +KL+A+A +KARGDQEALALLTGL G+Q V +AAA A +IQS LA+WSMVQNAW Sbjct: 187 TDPEKLEAIAAIKARGDQEALALLTGLSGEQSVAVTRAAAAATNAIQSRLALWSMVQNAW 246 Query: 246 YGLSLGSVLLLAAIGLAITFGVMGVINMAHGEMVMLGAYTTFVVQEVIRTRYPALFDYSL 305 YGLSLGSVLLLAAIGLAITFGVMGVINMAHGEMVM+GAY TFVVQE IRT YPALFDYSL Sbjct: 247 YGLSLGSVLLLAAIGLAITFGVMGVINMAHGEMVMIGAYVTFVVQETIRTSYPALFDYSL 306 Query: 306 LIAVPLAFLVAGLIGVVIERTIIRFLYGRPLETLLATWGLSLVLQQAVRTAFGPTNREVG 365 LIAVPLAFLVAGLIGV+IER+IIRFLYGRPLETLLATWGLSLVLQQAVRT FGPTNREVG Sbjct: 307 LIAVPLAFLVAGLIGVIIERSIIRFLYGRPLETLLATWGLSLVLQQAVRTLFGPTNREVG 366 Query: 366 NPSWMSGAFELGQITITYNRLWILCFTLAVFAILLAMLRYTALGLEMRAVTQNRRMAASM 425 NPSWMSGAFELGQI ITYNRLWILCFTLAVFAILLAMLRYT+LGLEMRAVTQNRRMAASM Sbjct: 367 NPSWMSGAFELGQIVITYNRLWILCFTLAVFAILLAMLRYTSLGLEMRAVTQNRRMAASM 426 Query: 426 GIATSRVDALTFGLGSGIAGIAGVALSQIDNVSPNLGQSYIIDSFMGVVFGGVGNLWGTL 485 GIATSRVDALTFGLGSGIAGIAGVALSQIDNVSPNLGQSYIIDSFM VVFGGVGNLWGTL Sbjct: 427 GIATSRVDALTFGLGSGIAGIAGVALSQIDNVSPNLGQSYIIDSFMVVVFGGVGNLWGTL 486 Query: 486 VGAFTLGIANKFLEPVAGAVLGKIAILVLIILFIQKRPRGLFALKGRAVEA 536 VGAFTLGIANKFLEP+AGAVLGKIAILVLIILFIQKRPRGLFALKGRA+EA Sbjct: 487 VGAFTLGIANKFLEPMAGAVLGKIAILVLIILFIQKRPRGLFALKGRAIEA 537 >ref|YP_001993161.1| urea ABC transporter permease [Rhodopseudomonas palustris TIE-1] gb|ACF02686.1| urea ABC transporter, permease protein UrtB [Rhodopseudomonas palustris TIE-1] Length = 537 Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/530 (79%), Positives = 466/530 (87%), Gaps = 3/530 (0%) Query: 10 RTLFLSILLLSCLI--MPALAGPFEDSVAKFANDEFSDTEAAIGEVAASGNALASPIISA 67 R LF ++ + S + +PA+AGP+ED++A+FA D FSD+E AIG++ ASGN A+ II+A Sbjct: 8 RILFAAVAIASVTLGSLPAVAGPYEDAIAQFAQDSFSDSEDAIGKLVASGNPRAAVIITA 67 Query: 68 LQDGRLSADPDSKKVFITQADGKIVDATTGAAVDKLPDNAAAVRLNNRLRRTVEAALGGL 127 LQDG+L ADPDSK FI DGKI +A TG AV LP A+AVRLNN+LRR V A+ GL Sbjct: 68 LQDGKLYADPDSKAAFIKTDDGKIANAATGEAVGALPAKASAVRLNNKLRRVVAGAMAGL 127 Query: 128 TLLSPDPAKRLAAAQSVFKSHEENLLPTVEGALAKESVKSIKQAFAEARAAIILFKSDAS 187 TLLSPD KRL AAQSVFKSH+E +LPTVE AL E + K+AF EARA+I+LFK AS Sbjct: 128 TLLSPDLDKRLQAAQSVFKSHDETMLPTVEAALKAEKNAAAKRAFTEARASILLFKQGAS 187 Query: 188 DSDKLDAVAVVKARGDQEALALLTGL-GDQPPLVAQAAATAVTSIQSNLAMWSMVQNAWY 246 D+DKLDA+A +KARGDQEA+ALLTG +Q VA A A +I+ NLA+WSMVQNAWY Sbjct: 188 DADKLDAIATIKARGDQEAMALLTGAPSNQSAAVASGIAGAKAAIERNLAIWSMVQNAWY 247 Query: 247 GLSLGSVLLLAAIGLAITFGVMGVINMAHGEMVMLGAYTTFVVQEVIRTRYPALFDYSLL 306 GLSLGSVLLLAAIGLAITFGVMGVINMAHGEMVMLGAYTTFVVQE IRTRYPALFDYSLL Sbjct: 248 GLSLGSVLLLAAIGLAITFGVMGVINMAHGEMVMLGAYTTFVVQEAIRTRYPALFDYSLL 307 Query: 307 IAVPLAFLVAGLIGVVIERTIIRFLYGRPLETLLATWGLSLVLQQAVRTAFGPTNREVGN 366 IAVPLAFLVAG +GV+IERT+IRFLYGRPLETLLATWGLSL+LQQAVRT FGPTNREVGN Sbjct: 308 IAVPLAFLVAGAVGVLIERTVIRFLYGRPLETLLATWGLSLILQQAVRTLFGPTNREVGN 367 Query: 367 PSWMSGAFELGQITITYNRLWILCFTLAVFAILLAMLRYTALGLEMRAVTQNRRMAASMG 426 PSWMSGAFELG++TITYNRLWILCFTLAVFA+LLAMLRYT+LGLEMRAVTQNRRMAASMG Sbjct: 368 PSWMSGAFELGEMTITYNRLWILCFTLAVFALLLAMLRYTSLGLEMRAVTQNRRMAASMG 427 Query: 427 IATSRVDALTFGLGSGIAGIAGVALSQIDNVSPNLGQSYIIDSFMGVVFGGVGNLWGTLV 486 IATSRVDALTFGLGSGIAGIAGVALSQIDNVSPNLGQSYIIDSFM VVFGGVGNLWGTLV Sbjct: 428 IATSRVDALTFGLGSGIAGIAGVALSQIDNVSPNLGQSYIIDSFMVVVFGGVGNLWGTLV 487 Query: 487 GAFTLGIANKFLEPVAGAVLGKIAILVLIILFIQKRPRGLFALKGRAVEA 536 GAF+LGIANKFLEPVAGAVLGKIAILVLIILFIQKRPRGLFALKGRAVEA Sbjct: 488 GAFSLGIANKFLEPVAGAVLGKIAILVLIILFIQKRPRGLFALKGRAVEA 537