BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0143.0031.p (486 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_575751.1| DEAD/DEAH box helicase-like [Nitrobacter hambur... 776 0.0 ref|ZP_01044484.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-31... 751 0.0 ref|YP_001242810.1| ATP-dependent RNA helicase [Bradyrhizobium s... 737 0.0 ref|YP_001203181.1| ATP-dependent RNA helicase [Bradyrhizobium s... 734 0.0 ref|YP_316933.1| DEAD/DEAH box helicase [Nitrobacter winogradsky... 732 0.0 >ref|YP_575751.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14] gb|ABE61291.1| DEAD/DEAH box helicase-like protein [Nitrobacter hamburgensis X14] Length = 477 Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/469 (82%), Positives = 420/469 (89%), Gaps = 10/469 (2%) Query: 11 KNHLLTSFQDFGLADPIARALREENYLTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASF 70 +NHLL+SFQDFGLADPI RAL EENYLTPTPIQ QTIPLALAGRD+VGIAQTGTGKTASF Sbjct: 3 RNHLLSSFQDFGLADPITRALAEENYLTPTPIQTQTIPLALAGRDIVGIAQTGTGKTASF 62 Query: 71 ALPILHRLLENRVRPQPKSCRVLVLSPTRELSGQILDSFNTYGRHIRLSSALAIGGVPMG 130 ALPILHRLL+NR++PQPKSCRVLVLSPTRELSGQIL+SFN YGRH+RL+SALAIGGVPMG Sbjct: 63 ALPILHRLLQNRIKPQPKSCRVLVLSPTRELSGQILESFNAYGRHLRLTSALAIGGVPMG 122 Query: 131 RQVRAVMQGVEVMVATPGRLLDLVHSNGLKLNQVEFLVLDEADRMLDMGFINDIRKIVAK 190 RQVRAVMQGVEVMVATPGRLLDLV SNGLKL QVEFLVLDEADRMLDMGFI+DIRK+VAK Sbjct: 123 RQVRAVMQGVEVMVATPGRLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFIHDIRKVVAK 182 Query: 191 LPIRRQTLFFSATMPKDIAELAEAMLRDPARVAVTPVASTVDRIAQRAIQVDFAAKPTVL 250 LP++RQTLFFSATMPKDIAELAE MLRDPARVAVTPVASTVDRIAQR IQVD A+KP L Sbjct: 183 LPVKRQTLFFSATMPKDIAELAEQMLRDPARVAVTPVASTVDRIAQRIIQVDHASKPAFL 242 Query: 251 AQLLKQEPVNRALVFTRTKHGADKVVKSLAKAGIEANAIHGNKSQNHRERTLAAFRSGEI 310 AQLLKQEPVNRAL+FTRTKHGADKVVKSLAK+GI ++AIHGNKSQNHRER LAAFR+GEI Sbjct: 243 AQLLKQEPVNRALIFTRTKHGADKVVKSLAKSGIRSDAIHGNKSQNHRERVLAAFRTGEI 302 Query: 311 RTLVATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGADGVAISLIAGAEEMG 370 RTLVATDIAARGIDVDG+SHVVNFDLPN+PETYVHRIGRTARAGADG AISL+AGAEEM Sbjct: 303 RTLVATDIAARGIDVDGISHVVNFDLPNVPETYVHRIGRTARAGADGAAISLVAGAEEMA 362 Query: 371 YLRDIERLIRITVPREDRRTQGGREAAAPAQATHPHRGGRSAPRAHNVRGNEAAPGAKGP 430 YLRDIE+LIR+ +PREDRRT G REAA Q HR GR A +H R +AAPGAKGP Sbjct: 363 YLRDIEKLIRVALPREDRRTPGQREAAPAHQQ---HRAGRPAQPSHTTRAGDAAPGAKGP 419 Query: 431 RRRRRRGGNNGAPQTSRGES-----PRPSQAGNSEGIQGVAFLHRESRP 474 RRR R G NG PQT R E+ R SQ G +EG+QGVAFLHR+SRP Sbjct: 420 RRRSRHG--NGVPQTKRPEAGRHEPSRSSQGGKAEGMQGVAFLHRQSRP 466 >ref|ZP_01044484.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A] gb|EAQ37265.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A] Length = 479 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/477 (78%), Positives = 421/477 (88%), Gaps = 10/477 (2%) Query: 11 KNHLLTSFQDFGLADPIARALREENYLTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASF 70 +N+LL+SFQDFGLADPI+RAL EENYLTPTPIQAQTIP+AL GRD+VGIAQTGTGKTASF Sbjct: 3 RNNLLSSFQDFGLADPISRALAEENYLTPTPIQAQTIPIALTGRDIVGIAQTGTGKTASF 62 Query: 71 ALPILHRLLENRVRPQPKSCRVLVLSPTRELSGQILDSFNTYGRHIRLSSALAIGGVPMG 130 ALPILHRLL+NR++PQPKSCRVLVLSPTRELSGQILD+FN YGRH+RL+SALAIGGVPMG Sbjct: 63 ALPILHRLLQNRIKPQPKSCRVLVLSPTRELSGQILDNFNAYGRHLRLTSALAIGGVPMG 122 Query: 131 RQVRAVMQGVEVMVATPGRLLDLVHSNGLKLNQVEFLVLDEADRMLDMGFINDIRKIVAK 190 RQVR+VM GV+VMVATPGRLLDLV SNGLKL QVEFLVLDEADRMLDMGFI+DIRK++AK Sbjct: 123 RQVRSVMHGVDVMVATPGRLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFIHDIRKVIAK 182 Query: 191 LPIRRQTLFFSATMPKDIAELAEAMLRDPARVAVTPVASTVDRIAQRAIQVDFAAKPTVL 250 LP++RQTL FSATMPKDIAELA MLRDPARVAVTPVASTVDRIAQR IQVD A+KP L Sbjct: 183 LPVKRQTLLFSATMPKDIAELANQMLRDPARVAVTPVASTVDRIAQRIIQVDHASKPAHL 242 Query: 251 AQLLKQEPVNRALVFTRTKHGADKVVKSLAKAGIEANAIHGNKSQNHRERTLAAFRSGEI 310 AQLLKQEPVNRAL+FTRTKHGADKVVKSLAK+GI +NAIHGNKSQNHRER LAAFR+GEI Sbjct: 243 AQLLKQEPVNRALIFTRTKHGADKVVKSLAKSGIRSNAIHGNKSQNHRERVLAAFRTGEI 302 Query: 311 RTLVATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGADGVAISLIAGAEEMG 370 RTLVATDIAARGIDVDG+SHVVNFDLPN+PETYVHRIGRTARAG +G AISL+AGAEEM Sbjct: 303 RTLVATDIAARGIDVDGISHVVNFDLPNVPETYVHRIGRTARAGTEGAAISLVAGAEEMA 362 Query: 371 YLRDIERLIRITVPREDRRTQGGREAA-APAQATHPHRGGRSAPRAHNVRGNEAAPGAKG 429 YLRDIE+LIR+ +PREDRRT G REAA AP Q HRGG +AP H R + + G KG Sbjct: 363 YLRDIEKLIRVVIPREDRRTSGQREAAPAPQQ----HRGGNNAPHGHAARAGDVSSG-KG 417 Query: 430 PRRRRRRGG--NNGAPQTSRGESPRPSQAGNSEGIQGVAFLHRESRPNPQHNRNNRP 484 RRRR +G N P++SR E+PR +Q G+QGVAFLHR+SR P+ ++N+P Sbjct: 418 SRRRRGKGTPQTNRRPESSRQETPRSAQGSKPGGMQGVAFLHRKSR--PERLKSNQP 472 >ref|YP_001242810.1| ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1] gb|ABQ38904.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain (rhlE gene) [Bradyrhizobium sp. BTAi1] Length = 469 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/472 (80%), Positives = 407/472 (86%), Gaps = 6/472 (1%) Query: 15 LTSFQDFGLADPIARALREENYLTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPI 74 +TSFQDF LAD + RAL+EENY TPTPIQAQTIP+AL GRDV+GIAQTGTGKTASFALPI Sbjct: 1 MTSFQDFNLADALTRALKEENYTTPTPIQAQTIPIALQGRDVIGIAQTGTGKTASFALPI 60 Query: 75 LHRLLENRVRPQPKSCRVLVLSPTRELSGQILDSFNTYGRHIRLSSALAIGGVPMGRQVR 134 LHRLLENR++PQPK+ RVLVLSPTRELSGQILDSFNTYGRHIRL+SALAIGGVPMGRQVR Sbjct: 61 LHRLLENRIKPQPKTARVLVLSPTRELSGQILDSFNTYGRHIRLTSALAIGGVPMGRQVR 120 Query: 135 AVMQGVEVMVATPGRLLDLVHSNGLKLNQVEFLVLDEADRMLDMGFINDIRKIVAKLPIR 194 A+M GV+V+VATPGRLLDLV N LKL QVEFLVLDEADRMLDMGFINDIRKIVAKLPI+ Sbjct: 121 ALMPGVDVLVATPGRLLDLVQGNALKLTQVEFLVLDEADRMLDMGFINDIRKIVAKLPIK 180 Query: 195 RQTLFFSATMPKDIAELAEAMLRDPARVAVTPVASTVDRIAQRAIQVDFAAKPTVLAQLL 254 RQTLFFSATMPKDIAELA+AMLRDPARVAVTPV+STV+RI QR IQVD +AKP++LAQLL Sbjct: 181 RQTLFFSATMPKDIAELADAMLRDPARVAVTPVSSTVERITQRVIQVDHSAKPSLLAQLL 240 Query: 255 KQEPVNRALVFTRTKHGADKVVKSLAKAGIEANAIHGNKSQNHRERTLAAFRSGEIRTLV 314 K EPVNRALVFTRTKHGADKVVK L KAGI A AIHGNKSQNHRERTLAAFR+GEIRTLV Sbjct: 241 KDEPVNRALVFTRTKHGADKVVKGLEKAGIPAQAIHGNKSQNHRERTLAAFRTGEIRTLV 300 Query: 315 ATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGADGVAISLIAGAEEMGYLRD 374 ATDIAARGIDVDGVSHVVNFDLPN+PETYVHRIGRTARAGADGVAISL+AGA+E+ YLRD Sbjct: 301 ATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGADGVAISLVAGADELSYLRD 360 Query: 375 IERLIRITVPREDRRTQGGREAAAPAQATHPHRGGRSAPRAHNVRGNEAAPGAKGPRRRR 434 IERL + T+PREDRRT G R+AA Q P GGR P N R N+ AKGPRRRR Sbjct: 361 IERLTKTTLPREDRRTPGHRDAAPAGQPQRP--GGR--PGMQNARANDGGNAAKGPRRRR 416 Query: 435 RRGGNNGAPQTSRGESPRPSQAGNSEG-IQGVAFLHRESRP-NPQHNRNNRP 484 R A +R E RPSQ G G IQGVAFLHRE RP N HNRN RP Sbjct: 417 RSNAKMPALPGNRQEPNRPSQGGGKSGSIQGVAFLHREGRPKNHAHNRNQRP 468 >ref|YP_001203181.1| ATP-dependent RNA helicase [Bradyrhizobium sp. ORS 278] emb|CAL74944.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain (rhlE gene) [Bradyrhizobium sp. ORS 278] Length = 473 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/475 (80%), Positives = 408/475 (85%), Gaps = 8/475 (1%) Query: 15 LTSFQDFGLADPIARALREENYLTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPI 74 +TSFQDF LAD + RAL+EENY TPTPIQAQTIPLAL GRDV+GIAQTGTGKTASFALPI Sbjct: 1 MTSFQDFNLADALTRALKEENYTTPTPIQAQTIPLALQGRDVIGIAQTGTGKTASFALPI 60 Query: 75 LHRLLENRVRPQPKSCRVLVLSPTRELSGQILDSFNTYGRHIRLSSALAIGGVPMGRQVR 134 LHRLLENR++PQPK+ RVLVLSPTRELSGQILDSFNTYGRHIRLSS LAIGGVPMGRQVR Sbjct: 61 LHRLLENRIKPQPKTARVLVLSPTRELSGQILDSFNTYGRHIRLSSTLAIGGVPMGRQVR 120 Query: 135 AVMQGVEVMVATPGRLLDLVHSNGLKLNQVEFLVLDEADRMLDMGFINDIRKIVAKLPIR 194 AVM GV+V+VATPGRLLDLV N LKL+ VEFLVLDEADRMLDMGFINDIRKIVAKLPI+ Sbjct: 121 AVMPGVDVLVATPGRLLDLVQGNALKLSHVEFLVLDEADRMLDMGFINDIRKIVAKLPIK 180 Query: 195 RQTLFFSATMPKDIAELAEAMLRDPARVAVTPVASTVDRIAQRAIQVDFAAKPTVLAQLL 254 RQTLFFSATMPKDIAELA++MLRDPARVAVTPV+STV+RIAQR IQVD +AKP++LAQLL Sbjct: 181 RQTLFFSATMPKDIAELADSMLRDPARVAVTPVSSTVERIAQRVIQVDHSAKPSLLAQLL 240 Query: 255 KQEPVNRALVFTRTKHGADKVVKSLAKAGIEANAIHGNKSQNHRERTLAAFRSGEIRTLV 314 K EPVNRALVFTRTKHGADKVVK L KAGI A AIHGNKSQNHRERTLAAFR+GEIRTLV Sbjct: 241 KNEPVNRALVFTRTKHGADKVVKGLEKAGIPAQAIHGNKSQNHRERTLAAFRTGEIRTLV 300 Query: 315 ATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGADGVAISLIAGAEEMGYLRD 374 ATDIAARGIDVDGVSHVVNFDLPN+PETYVHRIGRTARAGADGVAISL+AGA+EM YLRD Sbjct: 301 ATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGADGVAISLVAGADEMSYLRD 360 Query: 375 IERLIRITVPREDRRTQGGREAAAPA---QATHPHRGGRSAPRAHNVRGNEAAPGAKGPR 431 IERL + T+PREDRRT G R+ AAPA Q + H GGR P N R NE AKGPR Sbjct: 361 IERLTKTTLPREDRRTPGQRD-AAPAGQHQRQNGHGGGR--PGMQNARSNEGGNAAKGPR 417 Query: 432 RRRRRGGNNGAPQTSRGESPRPSQAGNSEG-IQGVAFLHRESRP-NPQHNRNNRP 484 RRRR +R E RP Q G G IQGVAFLHRE RP N HNRN RP Sbjct: 418 RRRRSNAKMPPLPGNRQEPQRPPQGGGKAGSIQGVAFLHREGRPKNHAHNRNQRP 472 >ref|YP_316933.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255] gb|ABA03581.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255] Length = 476 Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/471 (78%), Positives = 408/471 (86%), Gaps = 15/471 (3%) Query: 11 KNHLLTSFQDFGLADPIARALREENYLTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASF 70 +++LL+SFQDFGLADPI+RAL EENYLTPTPIQAQTIP+AL GRD+VGIAQTGTGKTA+F Sbjct: 3 RSNLLSSFQDFGLADPISRALAEENYLTPTPIQAQTIPIALTGRDLVGIAQTGTGKTAAF 62 Query: 71 ALPILHRLLENRVRPQPKSCRVLVLSPTRELSGQILDSFNTYGRHIRLSSALAIGGVPMG 130 ALPILHRLL+NR++PQPKSCRVLVLSPTRELSGQIL++FN YGRH+RL+SALAIGGVPMG Sbjct: 63 ALPILHRLLQNRIKPQPKSCRVLVLSPTRELSGQILENFNAYGRHLRLTSALAIGGVPMG 122 Query: 131 RQVRAVMQGVEVMVATPGRLLDLVHSNGLKLNQVEFLVLDEADRMLDMGFINDIRKIVAK 190 RQVRAVM GVEVMVATPGRLLDLV SNGLKL QVEFLVLDEADRMLDMGFI+DIRK+VAK Sbjct: 123 RQVRAVMHGVEVMVATPGRLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFIHDIRKVVAK 182 Query: 191 LPIRRQTLFFSATMPKDIAELAEAMLRDPARVAVTPVASTVDRIAQRAIQVDFAAKPTVL 250 LP +RQTLFFSATMPKDIAELA MLRDPARVAVTPV+STVDRI QR IQVD A K L Sbjct: 183 LPAKRQTLFFSATMPKDIAELANQMLRDPARVAVTPVSSTVDRITQRIIQVDHAGKAAFL 242 Query: 251 AQLLKQEPVNRALVFTRTKHGADKVVKSLAKAGIEANAIHGNKSQNHRERTLAAFRSGEI 310 AQLLKQEPVNRAL+FTRTKHGADKVVKSLAK+GI +NAIHGNKSQNHRER LA FR+GEI Sbjct: 243 AQLLKQEPVNRALIFTRTKHGADKVVKSLAKSGIRSNAIHGNKSQNHRERVLAEFRAGEI 302 Query: 311 RTLVATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGADGVAISLIAGAEEMG 370 RTLVATDIAARGIDVDG+SHVVNFDLPN+PETYVHRIGRTARAG DG AISL+AGAEEM Sbjct: 303 RTLVATDIAARGIDVDGISHVVNFDLPNVPETYVHRIGRTARAGTDGAAISLVAGAEEMA 362 Query: 371 YLRDIERLIRITVPREDRRTQGGREAA-APAQATHPHRGGRSAPRAHNVRGNEAAPGAKG 429 YLRDIE+LIR+ +PREDRRT G REAA AP Q +RGG AP H R +A+ G KG Sbjct: 363 YLRDIEKLIRVVLPREDRRTSGQREAAPAPQQ----NRGGSPAPHGHAARAGDASSG-KG 417 Query: 430 PRRRRRRGGNNGAPQTS------RGESPRPSQAGNSEGIQGVAFLHRESRP 474 RRRR + G PQTS R E+ R + G+QGVAFLHR+SRP Sbjct: 418 SRRRRSK---KGTPQTSRRPESGRQETSRSAPGSKPGGMQGVAFLHRKSRP 465