BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0143.0029.p         (70 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_782653.1| cold-shock DNA-binding domain-containing protei...   141   3e-32
ref|NP_949010.1| cold-shock DNA-binding domain-containing protei...   140   5e-32
ref|YP_533559.1| cold-shock DNA-binding domain-containing protei...   140   8e-32
ref|YP_485410.1| cold-shock DNA-binding domain-containing protei...   140   9e-32
ref|YP_001203179.1| DNA binding cold shock protein [Bradyrhizobi...   139   9e-32

>ref|YP_782653.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisA53]
 ref|YP_002290381.1| hypothetical protein OCAR_7413 [Oligotropha carboxidovorans OM5]
 ref|ZP_07025474.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
 ref|YP_004631681.1| cold shock protein CspA [Oligotropha carboxidovorans OM5]
 gb|ABJ07673.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisA53]
 gb|ACI94516.1| conserved domain protein [Oligotropha carboxidovorans OM5]
 gb|EFI52616.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
 gb|AEI01865.1| cold shock protein CspA [Oligotropha carboxidovorans OM4]
 gb|AEI05440.1| cold shock protein CspA [Oligotropha carboxidovorans OM5]
          Length = 70

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/70 (97%), Positives = 70/70 (100%)

Query: 1  VSMGTVKWFNATKGYGFIQPDEGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60
          +SMGTVKWFNATKGYGFIQPD+GGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK
Sbjct: 1  MSMGTVKWFNATKGYGFIQPDDGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60

Query: 61 SSADNLRAAG 70
          SSADNLRAAG
Sbjct: 61 SSADNLRAAG 70


>ref|NP_949010.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris CGA009]
 ref|YP_004108028.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris DX-1]
 emb|CAE29113.1| cold shock DNA binding protein [Rhodopseudomonas palustris
          CGA009]
 gb|ADU43295.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          DX-1]
          Length = 84

 Score =  140 bits (354), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/69 (98%), Positives = 69/69 (100%)

Query: 1  VSMGTVKWFNATKGYGFIQPDEGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60
          VSMGTVKWFNATKGYGFIQPD+GGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK
Sbjct: 15 VSMGTVKWFNATKGYGFIQPDDGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 74

Query: 61 SSADNLRAA 69
          SSADNLRAA
Sbjct: 75 SSADNLRAA 83


>ref|YP_533559.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisB18]
 gb|ABD89240.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisB18]
          Length = 70

 Score =  140 bits (352), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 67/70 (95%), Positives = 70/70 (100%)

Query: 1  VSMGTVKWFNATKGYGFIQPDEGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60
          +SMGTVKWFNATKG+GFIQPD+GGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK
Sbjct: 1  MSMGTVKWFNATKGFGFIQPDDGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60

Query: 61 SSADNLRAAG 70
          SSADNLRAAG
Sbjct: 61 SSADNLRAAG 70


>ref|YP_485410.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris HaA2]
 ref|YP_570637.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisB5]
 ref|YP_001242812.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
          BTAi1]
 ref|YP_001993165.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris TIE-1]
 gb|ABD06499.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          HaA2]
 gb|ABE40736.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisB5]
 gb|ABQ38906.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
 gb|ACF02690.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          TIE-1]
          Length = 70

 Score =  140 bits (352), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 67/69 (97%), Positives = 69/69 (100%)

Query: 1  VSMGTVKWFNATKGYGFIQPDEGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60
          +SMGTVKWFNATKGYGFIQPD+GGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK
Sbjct: 1  MSMGTVKWFNATKGYGFIQPDDGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60

Query: 61 SSADNLRAA 69
          SSADNLRAA
Sbjct: 61 SSADNLRAA 69


>ref|YP_001203179.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS 278]
 emb|CAL74942.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS 278]
          Length = 70

 Score =  139 bits (351), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 67/69 (97%), Positives = 69/69 (100%)

Query: 1  VSMGTVKWFNATKGYGFIQPDEGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60
          +SMGTVKWFNATKGYGFIQPD+GGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK
Sbjct: 1  MSMGTVKWFNATKGYGFIQPDDGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60

Query: 61 SSADNLRAA 69
          SSADNLRAA
Sbjct: 61 SSADNLRAA 69