BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0143.0025.p (481 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_01046954.1| hypothetical protein NB311A_14210 [Nitrobacte... 442 e-122 ref|YP_002290000.1| hypothetical protein OCAR_7027 [Oligotropha ... 440 e-121 ref|YP_004632026.1| hypothetical protein OCA5_c10660 [Oligotroph... 440 e-121 ref|YP_485578.1| hypothetical protein RPB_1959 [Rhodopseudomonas... 426 e-117 ref|YP_002289999.1| lipoprotein [Oligotropha carboxidovorans OM5... 425 e-117 >ref|ZP_01046954.1| hypothetical protein NB311A_14210 [Nitrobacter sp. Nb-311A] gb|EAQ35056.1| hypothetical protein NB311A_14210 [Nitrobacter sp. Nb-311A] Length = 493 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 259/483 (53%), Positives = 317/483 (65%), Gaps = 4/483 (0%) Query: 1 MSAETATVPQARSSVFAEVPAWFWMACGVYALLLVVGDRLLADSDTYWQIAVGRWILDHR 60 MS E RS++ A PAW GVY LLL+ GD LL D D +WQI VG+WIL H Sbjct: 1 MSVENTERIGGRSNI-AFAPAWLVAGAGVYLLLLIRGDSLLNDPDMFWQIKVGQWILAHH 59 Query: 61 ALPSVDIYSFTKAGQPWVSSSWLAQVLFAKAYDLAGWTGPAALAAACSAATFALLTAILG 120 A+P DIYSFT+AG+PW+SSSWL+QVLFA+AYD GW G L A +A FALL L Sbjct: 60 AVPFTDIYSFTRAGEPWISSSWLSQVLFAQAYDFGGWAGVVILTALAAATAFALLAHALC 119 Query: 121 RALPAIHASLIALAALVLTCGHLLARPHVLALPIMMVWANGLMVASERREAPSFWLLPLI 180 R LP + A ++ LVL HLLARPHVLA+P+M+ WA+GL AS R + PS WLLPL+ Sbjct: 120 RFLPPLQAGVVVCGVLVLAMPHLLARPHVLAMPVMIGWASGLASASGRGKTPSPWLLPLM 179 Query: 181 ALWANLHGGFLFGLVLAGAFALDALWNAAPAQRWPLALRWAAFGLGALAACCVTPYGWGT 240 LWANLHGGF+FGLVL GAFALDALWN AQR AL W F + A A C+TPYGWG+ Sbjct: 180 ILWANLHGGFVFGLVLVGAFALDALWNTGAAQRTRAALGWTLFAIAAFGASCLTPYGWGS 239 Query: 241 ILASLRILSLGELLHLIAEWMPASFSHVDAFELTILGLIGGALFAGVRLPLPRIALALGL 300 +LA+ IL LGE L LI EW P FS + AFE+ +LGL+G AL+ GVRL PR+ L +GL Sbjct: 240 LLAARNILGLGEALSLIGEWRPVDFSRLGAFEVCLLGLLGLALYRGVRLTPPRVLLTIGL 299 Query: 301 LHMALSHVRNLELFALLLPLAVLTPVATQF-GLRAAGVVRLKAMPAAMLIAALCVSTWFV 359 MA++H RN+E+FA LLPL V P++ QF LR V RL + + A + + Sbjct: 300 SQMAMAHNRNIEVFAFLLPLVVAEPLSAQFAALRNGAVARLPLPTFWLAVVAFGLGGFSA 359 Query: 360 AARWDMSPPPI--HSPAAAVDALKAHNVQRVLNDLQFGGYLIWRQVPVFVDGRAELYGES 417 A S P+ S AV ALK +RVLND FGG LI VPVF+DGR ELYGE Sbjct: 360 AFTAGHSYVPLAGKSLTGAVQALKDQGARRVLNDYDFGGSLIAADVPVFIDGRTELYGER 419 Query: 418 FEMAYYRALQLKDVNGFLDLLKTYRIDAVMLDPATPASRFLDHIAGWQRLYADDRVVVHV 477 F +A++ A+QL+DV FL LL YRIDA +LDPA+PA LD + GW+R+Y D VVH+ Sbjct: 420 FVLAHHNAIQLRDVGKFLSLLDGYRIDATLLDPASPAVHLLDRLDGWRRVYGDGDAVVHM 479 Query: 478 RAA 480 R A Sbjct: 480 RLA 482 >ref|YP_002290000.1| hypothetical protein OCAR_7027 [Oligotropha carboxidovorans OM5] gb|ACI94135.1| putative membrane protein [Oligotropha carboxidovorans OM5] Length = 492 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 254/465 (54%), Positives = 316/465 (67%), Gaps = 3/465 (0%) Query: 17 AEVPAWFWMACGVYALLLVVGDRLLADSDTYWQIAVGRWILDHRALPSVDIYSFTKAGQP 76 A PAW ++ G + +++ G+ LL DSDT WQIAVG+ I+DH A+P DIYSFT+AG P Sbjct: 17 AGAPAWALVSAGAFVVMMACGNGLLNDSDTLWQIAVGQSIIDHGAMPYADIYSFTRAGAP 76 Query: 77 WVSSSWLAQVLFAKAYDLAGWTGPAALAAACSAATFALLTAILGRALPAIHASLIALAAL 136 W SSSWL+QVL+A+AY L GW G ALAAA AA LL LGR + ++A++IAL AL Sbjct: 77 WRSSSWLSQVLYAQAYALGGWGGVVALAAAAIAAATGLLVRALGRYVAPVYAAVIALGAL 136 Query: 137 VLTCGHLLARPHVLALPIMMVWANGLMVASERREAPSFWLLPLIALWANLHGGFLFGLVL 196 L+ HLLARPHVL +P+M++W L A E APS LL LIALWANLHG F+FG+ + Sbjct: 137 ALSMPHLLARPHVLVMPVMVLWVAELSKAGEAGRAPSPLLLVLIALWANLHGSFVFGIAI 196 Query: 197 AGAFALDALWNAAPAQRWPLALRWAAFGLGALAACCVTPYGWGTILASLRILSLGELLHL 256 AGAF LDALWNA AQR L L+WAAFG GAL A C+TPYGWG+ +A+ +IL LG LL++ Sbjct: 197 AGAFGLDALWNAPAAQRGRLVLQWAAFGCGALLAACMTPYGWGSFIAASQILGLGGLLNI 256 Query: 257 IAEWMPASFSHVDAFELTILGLIGGALFAGVRLPLPRIALALGLLHMALSHVRNLELFAL 316 I+EW PA F H FE+ +LGLI G L + + PR + LGL+ MAL+H RN+EL AL Sbjct: 257 ISEWRPADFGHSGLFEIAVLGLIIGLLCSNISFAWPRALIVLGLVGMALAHRRNIELLAL 316 Query: 317 LLPLAVLTPVATQFGLRAAGVV--RLKAMPAAM-LIAALCVSTWFVAARWDMSPPPIHSP 373 L+PL V + +F + A R A P + L+ ALC AA P P Sbjct: 317 LVPLVVAARLVARFPVIAVDTQAPRKSASPVMLALLVALCAGVGATAAYALRFTPFAAQP 376 Query: 374 AAAVDALKAHNVQRVLNDLQFGGYLIWRQVPVFVDGRAELYGESFEMAYYRALQLKDVNG 433 + AVDALK H+ RVLNDL FGGYLIWR+VPVFVDGRAELYGE F+ Y RAL+L+DV+ Sbjct: 377 SVAVDALKQHHATRVLNDLPFGGYLIWRKVPVFVDGRAELYGEEFDTNYLRALELRDVDR 436 Query: 434 FLDLLKTYRIDAVMLDPATPASRFLDHIAGWQRLYADDRVVVHVR 478 FL LL IDA +L PATPA LD + GW+R++AD VVHVR Sbjct: 437 FLALLSDNNIDATLLAPATPAVTLLDRLPGWKRVHADGVAVVHVR 481 >ref|YP_004632026.1| hypothetical protein OCA5_c10660 [Oligotropha carboxidovorans OM5] gb|AEI02209.1| hypothetical protein OCA4_c10660 [Oligotropha carboxidovorans OM4] gb|AEI05785.1| hypothetical protein OCA5_c10660 [Oligotropha carboxidovorans OM5] Length = 515 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 254/465 (54%), Positives = 316/465 (67%), Gaps = 3/465 (0%) Query: 17 AEVPAWFWMACGVYALLLVVGDRLLADSDTYWQIAVGRWILDHRALPSVDIYSFTKAGQP 76 A PAW ++ G + +++ G+ LL DSDT WQIAVG+ I+DH A+P DIYSFT+AG P Sbjct: 40 AGAPAWALVSAGAFVVMMACGNGLLNDSDTLWQIAVGQSIIDHGAMPYADIYSFTRAGAP 99 Query: 77 WVSSSWLAQVLFAKAYDLAGWTGPAALAAACSAATFALLTAILGRALPAIHASLIALAAL 136 W SSSWL+QVL+A+AY L GW G ALAAA AA LL LGR + ++A++IAL AL Sbjct: 100 WRSSSWLSQVLYAQAYALGGWGGVVALAAAAIAAATGLLVRALGRYVAPVYAAVIALGAL 159 Query: 137 VLTCGHLLARPHVLALPIMMVWANGLMVASERREAPSFWLLPLIALWANLHGGFLFGLVL 196 L+ HLLARPHVL +P+M++W L A E APS LL LIALWANLHG F+FG+ + Sbjct: 160 ALSMPHLLARPHVLVMPVMVLWVAELSKAGEAGRAPSPLLLVLIALWANLHGSFVFGIAI 219 Query: 197 AGAFALDALWNAAPAQRWPLALRWAAFGLGALAACCVTPYGWGTILASLRILSLGELLHL 256 AGAF LDALWNA AQR L L+WAAFG GAL A C+TPYGWG+ +A+ +IL LG LL++ Sbjct: 220 AGAFGLDALWNAPAAQRGRLVLQWAAFGCGALLAACMTPYGWGSFIAASQILGLGGLLNI 279 Query: 257 IAEWMPASFSHVDAFELTILGLIGGALFAGVRLPLPRIALALGLLHMALSHVRNLELFAL 316 I+EW PA F H FE+ +LGLI G L + + PR + LGL+ MAL+H RN+EL AL Sbjct: 280 ISEWRPADFGHSGLFEIAVLGLIIGLLCSNISFAWPRALIVLGLVGMALAHRRNIELLAL 339 Query: 317 LLPLAVLTPVATQFGLRAAGVV--RLKAMPAAM-LIAALCVSTWFVAARWDMSPPPIHSP 373 L+PL V + +F + A R A P + L+ ALC AA P P Sbjct: 340 LVPLVVAARLVARFPVIAVDTQAPRKSASPVMLALLVALCAGVGATAAYALRFTPFAAQP 399 Query: 374 AAAVDALKAHNVQRVLNDLQFGGYLIWRQVPVFVDGRAELYGESFEMAYYRALQLKDVNG 433 + AVDALK H+ RVLNDL FGGYLIWR+VPVFVDGRAELYGE F+ Y RAL+L+DV+ Sbjct: 400 SVAVDALKQHHATRVLNDLPFGGYLIWRKVPVFVDGRAELYGEEFDTNYLRALELRDVDR 459 Query: 434 FLDLLKTYRIDAVMLDPATPASRFLDHIAGWQRLYADDRVVVHVR 478 FL LL IDA +L PATPA LD + GW+R++AD VVHVR Sbjct: 460 FLALLSDNNIDATLLAPATPAVTLLDRLPGWKRVHADGVAVVHVR 504 >ref|YP_485578.1| hypothetical protein RPB_1959 [Rhodopseudomonas palustris HaA2] gb|ABD06667.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 496 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 248/484 (51%), Positives = 308/484 (63%), Gaps = 7/484 (1%) Query: 1 MSAETATVPQARSSVFAEVPAWFWMACGVYALLLVVGDRLLADSDTYWQIAVGRWILDHR 60 ++A+++ + AR S A +P W+ VYA LLV GDRLL D DT WQ+ +G+WI+DHR Sbjct: 4 LTADSSDLAGARHS--AALP--LWIGVAVYAFLLVSGDRLLNDPDTLWQVTLGQWIIDHR 59 Query: 61 ALPSVDIYSFTKAGQPWVSSSWLAQVLFAKAYDLAGWTGPAALAAACSAATFALLTAILG 120 A+P VD+YSFT AGQPW+S+ WL+QVL A +Y LAGW GP L+AA AATF L LG Sbjct: 60 AVPQVDVYSFTMAGQPWISTQWLSQVLLAASYQLAGWAGPVVLSAAALAATFMLYARWLG 119 Query: 121 RALPAIHASLIALAALVLTCGHLLARPHVLALPIMMVWANGLMVASERREAPSFWLLPLI 180 + L A + AA+ L H+LARPHVLA+P+M+ W LM A++RR APSFWLLPL+ Sbjct: 120 QRLRGSTALVFVAAAVALMAPHMLARPHVLAMPVMVAWVGALMAAADRRAAPSFWLLPLM 179 Query: 181 ALWANLHGGFLFGLVLAGAFALDALWNAAPAQRWPLALRWAAFGLGALAACCVTPYGWGT 240 LWANLHGGF+ G+ L ALDA+ AAP++R L LRW AFG+ AL C PYGW Sbjct: 180 VLWANLHGGFVLGIALVAPIALDAVLAAAPSRRVSLLLRWGAFGVAALIVSCANPYGWNA 239 Query: 241 ILASLRILSLGELLHLIAEWMPASFSHVDAFELTILGLIGGALFAGVRLPLPRIALALGL 300 ILAS RILSLG L I EW P +FS V AFE+ +LG +G AL+ GV LP RI L LGL Sbjct: 240 ILASQRILSLGAALATIGEWAPVNFSRVGAFEVALLGGLGLALWRGVTLPPVRILLLLGL 299 Query: 301 LHMALSHVRNLELFALLLPLAVLTPVATQFG---LRAAGVVRLKAMPAAMLIAALCVSTW 357 +HMALS RN+E+ ALL PL + P+A Q G R RL A IA T Sbjct: 300 VHMALSANRNIEVLALLAPLIIAAPLARQIGGAEARGEAPARLSVGAVAAAIALTLGGTL 359 Query: 358 FVAARWDMSPPPIHSPAAAVDALKAHNVQRVLNDLQFGGYLIWRQVPVFVDGRAELYGES 417 A+ +P P +SPAAAV LK VQRV ND FGGYLI V F+DGR ELYGE+ Sbjct: 360 AFASLHRFAPHPANSPAAAVAELKTLGVQRVFNDYDFGGYLIANGVAPFIDGRTELYGEA 419 Query: 418 FEMAYYRALQLKDVNGFLDLLKTYRIDAVMLDPATPASRFLDHIAGWQRLYADDRVVVHV 477 F + A++LK LL Y IDA +L A+ LDHI GWQ++Y+DD +H+ Sbjct: 420 FVVEQNSAVRLKPPEKLFRLLADYDIDATLLRTEDAATHLLDHIDGWQKVYSDDVATIHL 479 Query: 478 RAAG 481 R G Sbjct: 480 RRPG 483 >ref|YP_002289999.1| lipoprotein [Oligotropha carboxidovorans OM5] gb|ACI94134.1| putative lipoprotein [Oligotropha carboxidovorans OM5] Length = 490 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 243/475 (51%), Positives = 307/475 (64%), Gaps = 10/475 (2%) Query: 11 ARSSVFAEVPAWFWMACGVYALLLVVGDRLLADSDTYWQIAVGRWILDHRALPSVDIYSF 70 A + V PAW W + LL++ G RLL D+DTYWQIAVG+WI+DHRA P VD+YSF Sbjct: 10 AETRVRIAPPAWAWFGACAFVLLVIGGSRLLYDADTYWQIAVGQWIIDHRAWPHVDVYSF 69 Query: 71 TKAGQPWVSSSWLAQVLFAKAYDLAGWTGPAALAAACSAATFALLTAILGRALPAIHASL 130 TK G+PW+S+SWLAQVL+A +Y+ AGW GP +AA A TF L +L + L A L Sbjct: 70 TKLGEPWISTSWLAQVLYALSYNAAGWAGPVVVAALPIAVTFGLFVYLLSQWLAPRQAVL 129 Query: 131 IALAALVLTCGHLLARPHVLALPIMMVWANGLMVASERREAPSFWLLPLIALWANLHGGF 190 I L ++++ GH LARPHVL LP+ + WA GL A++ R APS LLPL+ LWANLHG F Sbjct: 130 IGLVVVLISMGHFLARPHVLVLPLTLAWAAGLASAADARRAPSLLLLPLMVLWANLHGSF 189 Query: 191 LFGLVLAGAFALDALWNAAPAQRWPLALRWAAFGLGALAACCVTPYGWGTILASLRILSL 250 +FG+ L FAL A+W A R L +RW FG+ L A C TPYGW +ILAS IL+L Sbjct: 190 VFGIALVAPFALIAMWEADTDARVSLLIRWFLFGIATLIAACCTPYGWNSILASRNILAL 249 Query: 251 GELLHLIAEWMPASFSHVDAFELTILGLIGGALFAGVRLPLPRIALALGLLHMALSHVRN 310 G + LI EW+PA+F+ + FE+ ++ +GG L GV L LPR L GLL+MALSH RN Sbjct: 250 GSAMALIPEWLPANFAEPEFFEIAVMVCLGGLLMRGVALSLPRALLVTGLLYMALSHSRN 309 Query: 311 LELFALLLPLAVLTPVATQFGLRAAGVVRLKAMPAAM--LIAALCVSTWFVAARWDMSPP 368 E+FALL PL V P+ Q+ L + P++ L+A + V+ V A PP Sbjct: 310 FEIFALLAPLVVAKPLVAQWKL-----APVAQQPSSRWSLVALIFVTCAVVVAALIARPP 364 Query: 369 PIHS---PAAAVDALKAHNVQRVLNDLQFGGYLIWRQVPVFVDGRAELYGESFEMAYYRA 425 +S P AAV+ALKA + +RVLN GGYLI + +PVF+DGRAELYGE F + A Sbjct: 365 VPYSKITPVAAVEALKAQHPRRVLNTAGLGGYLITQNIPVFIDGRAELYGERFVVDTLNA 424 Query: 426 LQLKDVNGFLDLLKTYRIDAVMLDPATPASRFLDHIAGWQRLYADDRVVVHVRAA 480 LKDV GFL LL TY IDA +L TPA + LD + GWQR+YADDR VVH R A Sbjct: 425 FALKDVGGFLSLLNTYDIDATLLTSNTPAIKLLDRLPGWQRIYADDRAVVHQRVA 479