BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0143.0021.p (264 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001203172.1| putative pilus assembly protein CpaB [Bradyr... 355 4e-96 ref|NP_768080.1| pilus assembly protein [Bradyrhizobium japonicu... 352 3e-95 ref|YP_001242819.1| putative pilus assembly protein CpaB [Bradyr... 350 1e-94 ref|NP_767307.1| CtpC protein [Bradyrhizobium japonicum USDA 110... 343 1e-92 ref|YP_533566.1| Flp pilus assembly CpaB [Rhodopseudomonas palus... 343 2e-92 >ref|YP_001203172.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. ORS 278] emb|CAL74935.1| Putative pilus assembly protein, cpaB [Bradyrhizobium sp. ORS 278] Length = 248 Score = 355 bits (911), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 177/250 (70%), Positives = 214/250 (85%), Gaps = 7/250 (2%) Query: 19 ALYLASGSDDKPA---APPPVAQLPTVDILVARSDIGLGQAVKAEDLQWQTWPAATASAS 75 A YLASGSDD+ A AP P Q+PTVD+LVA++DIGLGQ++K E LQWQ+WPA+TAS+S Sbjct: 2 AAYLASGSDDRQAQVAAPAP--QVPTVDVLVAKADIGLGQSIKPELLQWQSWPASTASSS 59 Query: 76 FMRKDSHADAIKDVTGSIARAPFIQGEPIREQKLVKADGSGFMAAILPSGMRAVSTEISP 135 F+R++ + +VTG+IARAPFI GEPIREQKLVK+DGSGFMAAILP+GMRAVSTEISP Sbjct: 60 FIRRNERPEGQNEVTGTIARAPFIAGEPIREQKLVKSDGSGFMAAILPAGMRAVSTEISP 119 Query: 136 ETGAGGFILPNDRVDVLLSKRDKNPDR-NAADIVNSEVILTNIRVLAIDQAPKEKDGTNA 194 ETGAGGFILPNDRVDV+LSKR++NPD+ NA D+V+SE+IL NIRVLAIDQAPKEKDG Sbjct: 120 ETGAGGFILPNDRVDVILSKRERNPDQPNAGDVVSSEIILANIRVLAIDQAPKEKDGQTT 179 Query: 195 LIGKTVTLELKPDQTETLARARQSGVLSLALRSIADNNGTDVRTDDNHQRRGETINVIRF 254 ++GKTVTLELKP+Q ETLARARQ+G LSLALRSIAD N + R+DDN RRG+++ V+RF Sbjct: 180 VVGKTVTLELKPEQAETLARARQTGTLSLALRSIADVNMAEQRSDDNR-RRGDSVAVVRF 238 Query: 255 GVANQATMQK 264 G+ + T QK Sbjct: 239 GIPSTMTTQK 248 >ref|NP_768080.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46705.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] Length = 269 Score = 352 bits (904), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 178/259 (68%), Positives = 213/259 (82%), Gaps = 4/259 (1%) Query: 1 MDKARILVLAIAGCAGLAALYLASGSDDKPAAPPPVA-QLPTVDILVARSDIGLGQAVKA 59 M++ARI+VL +A CAG A YLASGSD+ P QLPTVD+LVA++DIGLGQ VK Sbjct: 4 MNRARIVVLTVAICAGGVAAYLASGSDNSAPPPAAPVAQLPTVDVLVAKNDIGLGQTVKP 63 Query: 60 EDLQWQTWPAATASASFMRKDSHADAIKDVTGSIARAPFIQGEPIREQKLVKADGSGFMA 119 ED+QWQTWPAATASA+F+R++ + + VTGSIARAPFIQGEPIR+QKLVKA+GSGFMA Sbjct: 64 EDVQWQTWPAATASATFIRRNERPEGVTQVTGSIARAPFIQGEPIRDQKLVKAEGSGFMA 123 Query: 120 AILPSGMRAVSTEISPETGAGGFILPNDRVDVLLSKRDKNPD--RNAADIVNSEVILTNI 177 AILP+GMRA+STEISPETGAGGFILPNDRVDVLL++R KNPD A DIV SE+IL NI Sbjct: 124 AILPTGMRAISTEISPETGAGGFILPNDRVDVLLTRRLKNPDPSNGAPDIVTSEIILANI 183 Query: 178 RVLAIDQAPKEKDGTNALIGKTVTLELKPDQTETLARARQSGVLSLALRSIADNNGTDVR 237 RVLAIDQAPKEKDG N ++GKTVTLEL P QT TL+ ARQSG LSLALRSI D +++ Sbjct: 184 RVLAIDQAPKEKDGQNTVVGKTVTLELNPTQTATLSAARQSGTLSLALRSIVDVKMSEIT 243 Query: 238 TDDNHQRRGETINVIRFGV 256 DD+ QRR + +++IR+G+ Sbjct: 244 LDDSAQRR-DGVSIIRYGI 261 >ref|YP_001242819.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. BTAi1] gb|ABQ38913.1| Putative pilus assembly protein, cpaB [Bradyrhizobium sp. BTAi1] Length = 249 Score = 350 bits (898), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 174/248 (70%), Positives = 210/248 (84%), Gaps = 2/248 (0%) Query: 19 ALYLASGSDDKPAAPPPVA-QLPTVDILVARSDIGLGQAVKAEDLQWQTWPAATASASFM 77 A YLASGSDD+PA VA + TV++LVA+SDI LGQ++K E LQWQ+WPAAT S+SF+ Sbjct: 2 AAYLASGSDDRPAPVAAVAPTVETVEVLVAKSDINLGQSLKPEHLQWQSWPAATTSSSFI 61 Query: 78 RKDSHADAIKDVTGSIARAPFIQGEPIREQKLVKADGSGFMAAILPSGMRAVSTEISPET 137 ++ + +VTG IARAPFI GEPIREQKLVKADGSGFMAAILP+GMRAVSTEISPET Sbjct: 62 QRKDRSKGDAEVTGMIARAPFIAGEPIREQKLVKADGSGFMAAILPAGMRAVSTEISPET 121 Query: 138 GAGGFILPNDRVDVLLSKRDKNPDR-NAADIVNSEVILTNIRVLAIDQAPKEKDGTNALI 196 GAGGFILPNDRVDVLLSKR++NP++ NA D+++SE+IL+NIRVLAIDQAPKEKDG ++ Sbjct: 122 GAGGFILPNDRVDVLLSKRERNPEQPNAGDVISSEIILSNIRVLAIDQAPKEKDGQTTVV 181 Query: 197 GKTVTLELKPDQTETLARARQSGVLSLALRSIADNNGTDVRTDDNHQRRGETINVIRFGV 256 GKTVTLELKP+Q ETLARARQSG LSLALRSIAD N + R+D+N +RRG+++ VIRFG+ Sbjct: 182 GKTVTLELKPEQAETLARARQSGTLSLALRSIADINVAENRSDENSRRRGDSVAVIRFGI 241 Query: 257 ANQATMQK 264 + T QK Sbjct: 242 PSTMTTQK 249 >ref|NP_767307.1| CtpC protein [Bradyrhizobium japonicum USDA 110] dbj|BAC45932.1| CtpC protein [Bradyrhizobium japonicum USDA 110] Length = 270 Score = 343 bits (880), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 178/270 (65%), Positives = 212/270 (78%), Gaps = 6/270 (2%) Query: 1 MDKARILVLAIAGCAGLAALYLASGSDDKPAAPPPVAQ-LPTVDILVARSDIGLGQAVKA 59 M+ ARI+VL IA AG A YLASG D+KPA PVA+ LPTV++LVA++DI LGQAVK Sbjct: 1 MNTARIVVLVIALGAGGVAAYLASGYDNKPAPALPVAEKLPTVEVLVAKNDIQLGQAVKP 60 Query: 60 EDLQWQTWPAATASASFMRKDSHADAIKDVTGSIARAPFIQGEPIREQKLVKADGSGFMA 119 EDLQWQ+WPAATAS +F+R+DS +A + GSIAR P +QGEPIREQKLV+A+GSGFMA Sbjct: 61 EDLQWQSWPAATASGAFIRRDSRPEAQTQIAGSIARVPLMQGEPIREQKLVRAEGSGFMA 120 Query: 120 AILPSGMRAVSTEISPETGAGGFILPNDRVDVLLSKRDKNPDRNAA----DIVNSEVILT 175 AILPSGMRAVST+++ ET AGGFILPNDRVD++L++R KNPD N D++ SEVILT Sbjct: 121 AILPSGMRAVSTDVTAETSAGGFILPNDRVDIVLTRRLKNPDVNGPTAGNDLILSEVILT 180 Query: 176 NIRVLAIDQAPKEKDGTNALIGKTVTLELKPDQTETLARARQSGVLSLALRSIADNNGTD 235 NIRVLAIDQAPKEKDG NA++GKTVTLELKPDQ TL ARQ G L LALRSI D N T+ Sbjct: 181 NIRVLAIDQAPKEKDGQNAVVGKTVTLELKPDQVATLTAARQGGTLQLALRSIVDANATE 240 Query: 236 VRTDDNHQRRGETINVIRFGV-ANQATMQK 264 + +D +R +NVIR+GV Q T QK Sbjct: 241 LTAEDLAIKRSGGVNVIRYGVQVRQLTSQK 270 >ref|YP_533566.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB18] gb|ABD89247.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB18] Length = 265 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 176/265 (66%), Positives = 209/265 (78%), Gaps = 1/265 (0%) Query: 1 MDKARILVLAIAGCAGLAALYLASGSDDKPAAPPPVAQLPTVDILVARSDIGLGQAVKAE 60 M+ ARI+VL IA AG A YLASG+D +P PVAQLPTVD+LVA+SDI LGQA+ Sbjct: 1 MNTARIVVLTIAVGAGGVAAYLASGADQQPPPAAPVAQLPTVDVLVAKSDIPLGQALTPG 60 Query: 61 DLQWQTWPAATASASFMRKDSHADAIKDVTGSIARAPFIQGEPIREQKLVKADGSGFMAA 120 D+QWQ WPAATAS F+R++ DA + GSIAR+ FI GEPIR+ KLVKA+GSGFMAA Sbjct: 61 DVQWQVWPAATASEMFIRRNVRPDATTQIVGSIARSAFIAGEPIRDLKLVKANGSGFMAA 120 Query: 121 ILPSGMRAVSTEISPETGAGGFILPNDRVDVLLSKRDKNPD-RNAADIVNSEVILTNIRV 179 ILPSGMRAVSTEISPETGAGGFILPNDRVDV+LSKR+KNPD R + D VNSE+IL+NIRV Sbjct: 121 ILPSGMRAVSTEISPETGAGGFILPNDRVDVILSKREKNPDARASGDGVNSEIILSNIRV 180 Query: 180 LAIDQAPKEKDGTNALIGKTVTLELKPDQTETLARARQSGVLSLALRSIADNNGTDVRTD 239 LAIDQ +EK+G ++GKT TLELKP+Q+E LARARQSG LSLALRS+AD N T Sbjct: 181 LAIDQTIEEKNGQKVVVGKTATLELKPEQSEGLARARQSGTLSLALRSLADANSAVADTP 240 Query: 240 DNHQRRGETINVIRFGVANQATMQK 264 D+ + ++INV+RFGV+ T QK Sbjct: 241 DDRSAKRDSINVVRFGVSTPTTTQK 265