BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0143.0020.p (487 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768079.1| pilus assembly protein [Bradyrhizobium japonicu... 771 0.0 ref|YP_001203171.1| putative pilus assembly protein CpaC [Bradyr... 748 0.0 ref|YP_001242820.1| putative pilus assembly protein CpaC [Bradyr... 742 0.0 ref|ZP_08628392.1| type II/IV secretion system secretin CpaC [Br... 734 0.0 ref|YP_782660.1| type II and III secretion system protein [Rhodo... 727 0.0 >ref|NP_768079.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46704.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] Length = 496 Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/495 (77%), Positives = 430/495 (86%), Gaps = 12/495 (2%) Query: 1 MKGGATQRTMRAFMVRALSFSAIAALTLNPALTPVVAGDYR-AAPAAADGQMNARFLALG 59 MK A TMR MVRALSFSA AL LNPALTPVVA DYR AAP AADGQMNARFL+LG Sbjct: 6 MKCRADLATMRTSMVRALSFSAALALVLNPALTPVVAADYRPAAPVAADGQMNARFLSLG 65 Query: 60 VGKSVVIDLPRDIKDVLVADPKIANAVVRSAQRAYIIGATVGQTNIVFFDAAGQQIAAYD 119 VGKS+VIDLPRDIKDVLVADPKIANAVVRS+QRAYIIGA VGQTNIVFFD+AGQQIAAYD Sbjct: 66 VGKSIVIDLPRDIKDVLVADPKIANAVVRSSQRAYIIGAAVGQTNIVFFDSAGQQIAAYD 125 Query: 120 IAVKRDLNGVRAALRAALPNADIQIEGVGEGVMLTGSAASPIEAQQAGEIATRLVGSADK 179 IAVKRDLNGVRAAL+ LPN+DIQI+G+GEG++LTG+AA+P+EAQQA ++A RL G ADK Sbjct: 126 IAVKRDLNGVRAALKQILPNSDIQIDGLGEGIVLTGTAANPMEAQQANDLAARLAGGADK 185 Query: 180 VVNSITVRGRDQVMLKVTVAEVSRSLIKQLGIDLTANLNYGTTVVKFTNNNPFTANNAAL 239 VVNSI VRGRDQVMLKVTVAEV+RS++KQLGIDLTANLNYGT+VV F+N+NPFTA L Sbjct: 186 VVNSIVVRGRDQVMLKVTVAEVARSIVKQLGIDLTANLNYGTSVVTFSNSNPFTALGKNL 245 Query: 240 VPGNALTTSFGAAPSVSATLRAMESAGVVRTLAEPNLTAISGESATFISGGEFPIPTGVT 299 V GN+LTT FGA PSV ATLRAME+AGV+RTLAEPNLTAISGESATFI+GGEFP+P G Sbjct: 246 VDGNSLTTKFGATPSVQATLRAMETAGVIRTLAEPNLTAISGESATFIAGGEFPVPAGYA 305 Query: 300 CQTTTGGAIGNCVQTVSFKKFGISLNFTPVVLTEGRISLRVMTEVSEVSTENSLTGGAGG 359 C TT C +SFKKFGISLNFTPVVLTEG+ISLRVMTEVSE+S EN++T Sbjct: 306 CDPTT----HVCTTQISFKKFGISLNFTPVVLTEGKISLRVMTEVSELSNENAITLSQAV 361 Query: 360 T-------TIPSIKTRRAETTLEIPSGGSMAMAGLIQDQTKQAINGLPGLASLPVLGTLF 412 T T+PSIKTRRAET+LEIPSGG+MAMAGLIQ QTKQA++GLPGL LP+LGTLF Sbjct: 362 TSTSVNSLTVPSIKTRRAETSLEIPSGGAMAMAGLIQQQTKQAVSGLPGLMQLPILGTLF 421 Query: 413 RSRDFVNNQTEMMVLVTPYVVRAVAQKDLSRPDDGFANASDPQADLLGSINRVYGVPGRT 472 RSRDFVNN TE++V+VTPY+VRAVAQKDLSRPDDGF+ +DPQ +LLG+INR+YGVPGRT Sbjct: 422 RSRDFVNNATELVVIVTPYIVRAVAQKDLSRPDDGFSAPADPQVELLGNINRIYGVPGRT 481 Query: 473 EPARNYRGTYGFITD 487 EP RNYRGTYGFITD Sbjct: 482 EPGRNYRGTYGFITD 496 >ref|YP_001203171.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. ORS 278] emb|CAL74934.1| putative Pilus assembly protein cpaC; putative signal peptide [Bradyrhizobium sp. ORS 278] Length = 500 Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/497 (77%), Positives = 424/497 (85%), Gaps = 14/497 (2%) Query: 1 MKGGATQRTMRAFMVRALSFSAIAALTLNPALTPVVAGDYRAAPAAA---DGQMNARFLA 57 M QR +R MVRALS SA AALTLNPAL PV+A DYR A AA DGQ+NARFLA Sbjct: 8 MTCSENQRKLRTLMVRALSLSAAAALTLNPALAPVIAADYRPAAAAPPAADGQINARFLA 67 Query: 58 LGVGKSVVIDLPRDIKDVLVADPKIANAVVRSAQRAYIIGATVGQTNIVFFDAAGQQIAA 117 LGVGKSVVIDLPRDIKDVLVADPKIANAVVRS+QRAYIIGA VGQTNIVFFDA GQQIAA Sbjct: 68 LGVGKSVVIDLPRDIKDVLVADPKIANAVVRSSQRAYIIGAAVGQTNIVFFDAQGQQIAA 127 Query: 118 YDIAVKRDLNGVRAALRAALPNADIQIEGVGEGVMLTGSAASPIEAQQAGEIATRLVGSA 177 YDIAVKRDLNG RAAL+ LPNADIQIEG+G+G++LTGSA+S IEAQQAGE+A RL G A Sbjct: 128 YDIAVKRDLNGARAALKQLLPNADIQIEGLGDGIVLTGSASSQIEAQQAGELAARLAGGA 187 Query: 178 DKVVNSITVRGRDQVMLKVTVAEVSRSLIKQLGIDLTANLNYGTTVVKFTNNNPFTANNA 237 +KVVNSITVRGRDQVMLKVTVAEV RS++KQLGIDL+ LNYGT VVKF N+NPFTA + Sbjct: 188 EKVVNSITVRGRDQVMLKVTVAEVQRSVVKQLGIDLSGQLNYGTAVVKFANSNPFTAYGS 247 Query: 238 ALVPGNALTTSFGAAPSVSATLRAMESAGVVRTLAEPNLTAISGESATFISGGEFPIPTG 297 LV NA++ +FG+ PSV ATLRAME+AGV+RTLAEPNLTAISGESATFI+GGEFP+P G Sbjct: 248 NLVSNNAVSAAFGSTPSVQATLRAMENAGVIRTLAEPNLTAISGESATFIAGGEFPVPAG 307 Query: 298 VTCQTTTGGAIGNCVQTVSFKKFGISLNFTPVVLTEGRISLRVMTEVSEVSTENSLT--- 354 +C TT C +SFKKFGISLNFTP+VL+EGRIS+RVMTEVSE+S ENS+T Sbjct: 308 YSCDPTT----HVCTTQISFKKFGISLNFTPIVLSEGRISMRVMTEVSELSNENSITLSQ 363 Query: 355 ----GGAGGTTIPSIKTRRAETTLEIPSGGSMAMAGLIQDQTKQAINGLPGLASLPVLGT 410 T+PSIKTRRAETTLEIPSGG+MAMAGLIQ QTKQAI+G+PGL LPVLG Sbjct: 364 AVSSTTVNSLTVPSIKTRRAETTLEIPSGGAMAMAGLIQQQTKQAISGMPGLMQLPVLGA 423 Query: 411 LFRSRDFVNNQTEMMVLVTPYVVRAVAQKDLSRPDDGFANASDPQADLLGSINRVYGVPG 470 LFRSRD+VNNQTE+MVLVTP+VVRAV+QKDLSRPDDGFA ASDPQADLLGSINR+YGVPG Sbjct: 424 LFRSRDYVNNQTELMVLVTPFVVRAVSQKDLSRPDDGFAAASDPQADLLGSINRIYGVPG 483 Query: 471 RTEPARNYRGTYGFITD 487 RTEP RNYRGTYGFITD Sbjct: 484 RTEPGRNYRGTYGFITD 500 >ref|YP_001242820.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1] gb|ABQ38914.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1] Length = 497 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/496 (77%), Positives = 422/496 (85%), Gaps = 15/496 (3%) Query: 1 MKGGATQRTMRAFMVRALSFSAIAALTLNPALTPVVAGDYRAA--PAAADGQMNARFLAL 58 M QR +R MVRALSFSA AALTLNPAL PV+A DY A AAADGQ+NARFLAL Sbjct: 8 MTCSENQRKLRTAMVRALSFSAAAALTLNPALAPVIAADYHPAVTAAAADGQINARFLAL 67 Query: 59 GVGKSVVIDLPRDIKDVLVADPKIANAVVRSAQRAYIIGATVGQTNIVFFDAAGQQIAAY 118 GVGKSVVIDLPRDIKDVLVADPKIANAVVRS+QRAYIIGATVGQTNIVFFDA GQQIAAY Sbjct: 68 GVGKSVVIDLPRDIKDVLVADPKIANAVVRSSQRAYIIGATVGQTNIVFFDAQGQQIAAY 127 Query: 119 DIAVKRDLNGVRAALRAALPNADIQIEGVGEGVMLTGSAASPIEAQQAGEIATRLVGSAD 178 DIAVKRDLNG RAAL+ LPN+DIQIEG+G+ ++L+GSAAS IEAQQAGE+A RL G AD Sbjct: 128 DIAVKRDLNGARAALKQLLPNSDIQIEGLGDSIVLSGSAASQIEAQQAGELAARLAGGAD 187 Query: 179 KVVNSITVRGRDQVMLKVTVAEVSRSLIKQLGIDLTANLNYGTTVVKFTNNNPFTANNAA 238 KVVNSITVRGRDQVMLKVTVAEV RS++KQLGIDL+ LNYGT VVKF N+NPFTA + Sbjct: 188 KVVNSITVRGRDQVMLKVTVAEVQRSVVKQLGIDLSGQLNYGTAVVKFANSNPFTAYGSN 247 Query: 239 LVPGNALTTSFGAAPSVSATLRAMESAGVVRTLAEPNLTAISGESATFISGGEFPIPTGV 298 LV NA+ SFG+ SV ATLRAME+AGV+RTLAEPNLTAISGESATFI+GGEFP+P G Sbjct: 248 LVSNNAINASFGS--SVQATLRAMENAGVIRTLAEPNLTAISGESATFIAGGEFPVPAGY 305 Query: 299 TCQTTTGGAIGNCVQTVSFKKFGISLNFTPVVLTEGRISLRVMTEVSEVSTENSLTGGAG 358 +C TT C +SFKKFGISLNFTPVVL EGRISLRVMTEVSE+S ENS+T Sbjct: 306 SCDPTT----HVCTTQISFKKFGISLNFTPVVLAEGRISLRVMTEVSELSNENSITLSQA 361 Query: 359 GT-------TIPSIKTRRAETTLEIPSGGSMAMAGLIQDQTKQAINGLPGLASLPVLGTL 411 T T+PSIKTRRAETTLEIPSGG+MAMAGLIQ QTKQAI+G+PGL LPVLGTL Sbjct: 362 VTSSTVNSLTVPSIKTRRAETTLEIPSGGAMAMAGLIQQQTKQAISGMPGLMQLPVLGTL 421 Query: 412 FRSRDFVNNQTEMMVLVTPYVVRAVAQKDLSRPDDGFANASDPQADLLGSINRVYGVPGR 471 FRSRD+VNNQTE+MVLVTP+VVRAVAQKDLSRPDDGFA ASD QADLLGSINR+YGVPGR Sbjct: 422 FRSRDYVNNQTELMVLVTPFVVRAVAQKDLSRPDDGFAAASDRQADLLGSINRIYGVPGR 481 Query: 472 TEPARNYRGTYGFITD 487 EP R+YRGTYGFITD Sbjct: 482 VEPGRSYRGTYGFITD 497 >ref|ZP_08628392.1| type II/IV secretion system secretin CpaC [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08895.1| type II/IV secretion system secretin CpaC [Bradyrhizobiaceae bacterium SG-6C] Length = 475 Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/479 (75%), Positives = 413/479 (86%), Gaps = 9/479 (1%) Query: 14 MVRALSFSAIAALTLNPALTPVVAGDYRAAPAAADGQMNARFLALGVGKSVVIDLPRDIK 73 MVRALS++AI ALTLNP L P +A DYRAA A+A GQ+NARFL LG+GKSVVIDLPRD+K Sbjct: 1 MVRALSYAAICALTLNPVLAPAIASDYRAAAASAGGQLNARFLPLGIGKSVVIDLPRDVK 60 Query: 74 DVLVADPKIANAVVRSAQRAYIIGATVGQTNIVFFDAAGQQIAAYDIAVKRDLNGVRAAL 133 DVLVADPKIANAVVRSAQRAYIIGA VGQTNI+FFD++GQQIAAYDIAV RDLNGVRAAL Sbjct: 61 DVLVADPKIANAVVRSAQRAYIIGAAVGQTNIIFFDSSGQQIAAYDIAVTRDLNGVRAAL 120 Query: 134 RAALPNADIQIEGVGEGVMLTGSAASPIEAQQAGEIATRLVGSADKVVNSITVRGRDQVM 193 + A P +DI+IEGVG+GVML+G AA+P EAQQA E+A+RL GS DKVVNSI VRGRDQVM Sbjct: 121 KQAFPMSDIRIEGVGDGVMLSGWAANPAEAQQAQEMASRLAGSPDKVVNSIAVRGRDQVM 180 Query: 194 LKVTVAEVSRSLIKQLGIDLTANLNYGTTVVKFTNNNPFTANNAALVPGNALTTSFGA-- 251 LKVTVAEV R +IKQLGIDL+A LNYGT VV F N NPFTA LV GN+L SFG+ Sbjct: 181 LKVTVAEVQRDIIKQLGIDLSAKLNYGTAVVNFNNTNPFTAFGRPLVAGNSLAGSFGSTG 240 Query: 252 -APSVSATLRAMESAGVVRTLAEPNLTAISGESATFISGGEFPIPTGVTCQTTTGGAIGN 310 P+V+AT+RAMESAGVVRTLAEPNLTAISGESATF++GGEFP+P G TC + Sbjct: 241 GVPAVTATMRAMESAGVVRTLAEPNLTAISGESATFVAGGEFPLPKGYTCDPVSRA---- 296 Query: 311 CVQTVSFKKFGISLNFTPVVLTEGRISLRVMTEVSEVSTENSLTGGAGGT--TIPSIKTR 368 C + FKKFGI+LNFTP+VL EGRISLRV+TEVSE+S +N++T G+ TIPS+KTR Sbjct: 297 CTTQIDFKKFGITLNFTPIVLAEGRISLRVLTEVSELSPDNAITLDQNGSTLTIPSVKTR 356 Query: 369 RAETTLEIPSGGSMAMAGLIQDQTKQAINGLPGLASLPVLGTLFRSRDFVNNQTEMMVLV 428 RAETTLEIPSGGSMAMAGLIQ+QTKQ+INGLPGL+ LPVLGTLFRSRD+VN TE+MVLV Sbjct: 357 RAETTLEIPSGGSMAMAGLIQEQTKQSINGLPGLSQLPVLGTLFRSRDYVNRNTELMVLV 416 Query: 429 TPYVVRAVAQKDLSRPDDGFANASDPQADLLGSINRVYGVPGRTEPARNYRGTYGFITD 487 TPY+VRAVAQKDLSRPDDGFA+A+DPQ+DLLG+INR+YGVPGR EP R YRGTYGFITD Sbjct: 417 TPYIVRAVAQKDLSRPDDGFADAADPQSDLLGNINRIYGVPGRVEPGRKYRGTYGFITD 475 >ref|YP_782660.1| type II and III secretion system protein [Rhodopseudomonas palustris BisA53] gb|ABJ07680.1| type II and III secretion system protein [Rhodopseudomonas palustris BisA53] Length = 486 Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/491 (74%), Positives = 415/491 (84%), Gaps = 9/491 (1%) Query: 1 MKGGATQRTMRAFMVRALSFSAIAALTLNPALTPVVAGDYRAAPAAADGQMNARFLALGV 60 M GG + R R F VR+L+++A+AAL+L PA PV+A DYR A A +GQMNA FLALG+ Sbjct: 1 MTGGTSNRPARRFAVRSLAWTAVAALSLQPAALPVIAADYRPA-VANEGQMNAHFLALGI 59 Query: 61 GKSVVIDLPRDIKDVLVADPKIANAVVRSAQRAYIIGATVGQTNIVFFDAAGQQIAAYDI 120 KSVVIDLPRDIKDVLVADPKIA AV+RSAQRAYIIGA+VGQTNIVFFDAAGQQIAAYDI Sbjct: 60 SKSVVIDLPRDIKDVLVADPKIATAVIRSAQRAYIIGASVGQTNIVFFDAAGQQIAAYDI 119 Query: 121 AVKRDLNGVRAALRAALPNADIQIEGVG-EGVMLTGSAASPIEAQQAGEIATRLVGSADK 179 AV RDLNG+RAAL+ LPN DI++EGVG +GV+L+GS +SP+EAQQAGE+A RL A+ Sbjct: 120 AVTRDLNGIRAALKQTLPNTDIRVEGVGPKGVLLSGSVSSPVEAQQAGEVAARLAEGAEN 179 Query: 180 VVNSITVRGRDQVMLKVTVAEVSRSLIKQLGIDLTANLNYGTTVVKFTNNNPFTANNAAL 239 VVNSI VRGRDQVMLKVTVAEV R +IKQ+GIDL+A++ YGT VV F N NPFTA L Sbjct: 180 VVNSIAVRGRDQVMLKVTVAEVQRDIIKQMGIDLSASMTYGTAVVNFNNTNPFTAFGRQL 239 Query: 240 VPGNALTTSFGAAPSVSATLRAMESAGVVRTLAEPNLTAISGESATFISGGEFPIPTGVT 299 V GN+L TSFG P+V+ATLRAMESAGVVRTLAEPNLTAISGESATFI+GGEFP+P+G Sbjct: 240 VTGNSLATSFGGGPTVTATLRAMESAGVVRTLAEPNLTAISGESATFIAGGEFPVPSGYN 299 Query: 300 CQTTTGGAIGNCVQTVSFKKFGISLNFTPVVLTEGRISLRVMTEVSEVSTENSLT---GG 356 T +G ++FKKFGISLNFTPVV+TEGRISLRVMTEVSE+S +NS+T Sbjct: 300 YDPVT--HVGTT--QIAFKKFGISLNFTPVVMTEGRISLRVMTEVSELSNDNSITLTQSN 355 Query: 357 AGGTTIPSIKTRRAETTLEIPSGGSMAMAGLIQDQTKQAINGLPGLASLPVLGTLFRSRD 416 G T+PSIKTRRAETTLEIPSGGSMAMAGLIQ+QTKQAINGLPG+A +PVLG+LFRSRD Sbjct: 356 GDGLTVPSIKTRRAETTLEIPSGGSMAMAGLIQEQTKQAINGLPGMAQIPVLGSLFRSRD 415 Query: 417 FVNNQTEMMVLVTPYVVRAVAQKDLSRPDDGFANASDPQADLLGSINRVYGVPGRTEPAR 476 +VN QTE+MVLVTPYVVRAVAQKDLSRPDDGFA SDPQ DLLGSINR+YGVPG+ P R Sbjct: 416 YVNRQTELMVLVTPYVVRAVAQKDLSRPDDGFAAVSDPQGDLLGSINRIYGVPGKPGPDR 475 Query: 477 NYRGTYGFITD 487 NYRGTYGFITD Sbjct: 476 NYRGTYGFITD 486