BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0143.0019.p         (105 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_782661.1| pilus biogenesis lipoprotein CpaD [Rhodopseudom...   178   2e-43
ref|ZP_08628391.1| Flp pilus assembly protein CpaD [Bradyrhizobi...   173   1e-41
ref|NP_768078.1| pilus assembly protein [Bradyrhizobium japonicu...   165   2e-39
ref|YP_001242821.1| putative pilus assembly protein CpaD [Bradyr...   165   2e-39
ref|YP_533568.1| pilus assembly protein CpaD [Rhodopseudomonas p...   164   4e-39

>ref|YP_782661.1| pilus biogenesis lipoprotein CpaD [Rhodopseudomonas palustris
           BisA53]
 gb|ABJ07681.1| pilus biogenesis lipoprotein CpaD [Rhodopseudomonas palustris
           BisA53]
          Length = 249

 Score =  178 bits (452), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/103 (79%), Positives = 92/103 (89%)

Query: 3   AIRVNYPKMKAVAGPCGLWPEDLGPSIHNGSYIENKQYYNFGCANQRNLAAMVEDPTDLV 62
           AIRVNYP++ A AGPCGLWP+DLGPS++N  YIENK  YN GCA QRNLAAMVE+P DLV
Sbjct: 147 AIRVNYPRLVATAGPCGLWPDDLGPSVNNPGYIENKPSYNHGCAVQRNLAAMVENPADLV 206

Query: 63  QPRAETPAYTSRRNIAFDKYRKGTTTATSYPESDRAKLSDTGK 105
           QPRAETPAYT+RR IAFDKYRKGT+TAT+YPESD+AKLSD GK
Sbjct: 207 QPRAETPAYTARRTIAFDKYRKGTSTATTYPESDKAKLSDAGK 249


>ref|ZP_08628391.1| Flp pilus assembly protein CpaD [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP08894.1| Flp pilus assembly protein CpaD [Bradyrhizobiaceae bacterium SG-6C]
          Length = 245

 Score =  173 bits (438), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/102 (75%), Positives = 91/102 (89%)

Query: 4   IRVNYPKMKAVAGPCGLWPEDLGPSIHNGSYIENKQYYNFGCANQRNLAAMVEDPTDLVQ 63
           IRVNYP++ A AGPCG+WPEDLGPSI N  Y+EN+ YYN GCA+QRNLAAMV++P+DLVQ
Sbjct: 144 IRVNYPRITADAGPCGVWPEDLGPSIKNKGYLENRPYYNLGCASQRNLAAMVDNPSDLVQ 203

Query: 64  PRAETPAYTSRRNIAFDKYRKGTTTATSYPESDRAKLSDTGK 105
           PRAETPAYT RRN+AFDKYRKG TT T+YPE+D+AKLS+ GK
Sbjct: 204 PRAETPAYTPRRNVAFDKYRKGNTTTTTYPEADKAKLSEVGK 245


>ref|NP_768078.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46703.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
          Length = 244

 Score =  165 bits (418), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 74/105 (70%), Positives = 89/105 (84%)

Query: 1   MPAIRVNYPKMKAVAGPCGLWPEDLGPSIHNGSYIENKQYYNFGCANQRNLAAMVEDPTD 60
           +P IR+ Y K+ AVAGPCGLWPED+GPS+ N  + ENK+YYN+GCA QRNLAAMV++P+D
Sbjct: 140 LPPIRLTYSKIAAVAGPCGLWPEDIGPSMKNKGWFENKEYYNYGCAYQRNLAAMVDNPSD 199

Query: 61  LVQPRAETPAYTSRRNIAFDKYRKGTTTATSYPESDRAKLSDTGK 105
           L QPR ETP+YT+RR  AF+KYRKG  TA SYPE+DRAKLSDTGK
Sbjct: 200 LEQPRPETPSYTTRRTAAFEKYRKGVPTAVSYPEADRAKLSDTGK 244


>ref|YP_001242821.1| putative pilus assembly protein CpaD [Bradyrhizobium sp. BTAi1]
 gb|ABQ38915.1| Putative pilus assembly protein cpaD [Bradyrhizobium sp. BTAi1]
          Length = 244

 Score =  165 bits (417), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 73/105 (69%), Positives = 91/105 (86%)

Query: 1   MPAIRVNYPKMKAVAGPCGLWPEDLGPSIHNGSYIENKQYYNFGCANQRNLAAMVEDPTD 60
           M AIR++YPKM A AGPCG+WP+DLGP+I N ++ ENK  +NFGCA QRN+AAMV++P D
Sbjct: 140 MAAIRLSYPKMSATAGPCGVWPDDLGPTIKNKNWFENKPDWNFGCAYQRNMAAMVDNPAD 199

Query: 61  LVQPRAETPAYTSRRNIAFDKYRKGTTTATSYPESDRAKLSDTGK 105
           LVQPRAETP+YT+RR   FDKYRKG++TA +YPE+D+AKLSDTGK
Sbjct: 200 LVQPRAETPSYTTRRTALFDKYRKGSSTAITYPEADKAKLSDTGK 244


>ref|YP_533568.1| pilus assembly protein CpaD [Rhodopseudomonas palustris BisB18]
 gb|ABD89249.1| pilus assembly protein CpaD [Rhodopseudomonas palustris BisB18]
          Length = 246

 Score =  164 bits (415), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 74/103 (71%), Positives = 88/103 (85%)

Query: 3   AIRVNYPKMKAVAGPCGLWPEDLGPSIHNGSYIENKQYYNFGCANQRNLAAMVEDPTDLV 62
           AIRVNYP++ A AGPCGLWP+DLG S  N  Y ENK Y+N GCA+QRNLAAMV++P DLV
Sbjct: 144 AIRVNYPRLTATAGPCGLWPDDLGSSSKNHDYFENKPYWNLGCASQRNLAAMVDNPADLV 203

Query: 63  QPRAETPAYTSRRNIAFDKYRKGTTTATSYPESDRAKLSDTGK 105
           QPR ETPAYT+RR  +F+KYRKGT+T T+YPE+D+AKLSDTGK
Sbjct: 204 QPRGETPAYTARRTNSFEKYRKGTSTTTTYPEADKAKLSDTGK 246