BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0143.0017.p (476 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_782663.1| type II secretion system protein E [Rhodopseudo... 866 0.0 ref|ZP_01044498.1| type II secretion system protein E [Nitrobact... 862 0.0 ref|YP_575739.1| type II secretion system protein E [Nitrobacter... 858 0.0 ref|YP_001993174.1| type II secretion system protein E [Rhodopse... 841 0.0 ref|NP_768076.1| pilus assembly protein [Bradyrhizobium japonicu... 838 0.0 >ref|YP_782663.1| type II secretion system protein E [Rhodopseudomonas palustris BisA53] gb|ABJ07683.1| type II secretion system protein E [Rhodopseudomonas palustris BisA53] Length = 489 Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/474 (90%), Positives = 451/474 (95%), Gaps = 4/474 (0%) Query: 1 VRAPKPAFQAPE--PAGAPAMSRESAAPAISSPPLAPSKPP-PAPAVEARRSDNYYQVKA 57 VRA KPA A E P GAP M + AI+SPPLAP++ P P A+E +RSDNYYQVKA Sbjct: 12 VRAMKPASVAQEAPPGGAPRMP-DPVPAAIASPPLAPARQPQPPTAIETKRSDNYYQVKA 70 Query: 58 TIFGALIEAIDLAQLAKLDSESAREEIRDIVNEIIAIKNIVMSIAEQEELLDDICNDVLG 117 TIFGALIEAIDLAQLAKLD ESAREEIRDIVNEIIAIKNIVMSIAEQEELLDDICNDVLG Sbjct: 71 TIFGALIEAIDLAQLAKLDGESAREEIRDIVNEIIAIKNIVMSIAEQEELLDDICNDVLG 130 Query: 118 YGPLEPLLSRDDIADIMVNGAGTVFIEVAGKIQRTGIRFRDNQQLLNICQRIVSQVGRRV 177 YGPLEPLLSRDDI+DIMVNGAGTVFIEVAG+IQRTGIRFRDNQQLLNICQRIVSQVGRRV Sbjct: 131 YGPLEPLLSRDDISDIMVNGAGTVFIEVAGRIQRTGIRFRDNQQLLNICQRIVSQVGRRV 190 Query: 178 DESSPICDARLADGSRVNAIVPPLAIDGPALTIRKFKKDKLTLEQLVKFGAITPEGATIL 237 DESSPICDARLADGSRVNAIVPPLAIDGPALTIRKFKKDKLTL+QLVKFGAI+P+GATIL Sbjct: 191 DESSPICDARLADGSRVNAIVPPLAIDGPALTIRKFKKDKLTLDQLVKFGAISPDGATIL 250 Query: 238 QIIGRVRCNVIISGGTGSGKTTLLNCLTNYIEHDERIITCEDAAELQLQQPHVVRLETRP 297 QIIGRVRCNV+ISGGTGSGKTTLLNCLTNYI+ DERIITCEDAAELQLQQPHVVRLETRP Sbjct: 251 QIIGRVRCNVLISGGTGSGKTTLLNCLTNYIDDDERIITCEDAAELQLQQPHVVRLETRP 310 Query: 298 PNIEGEGQVTMRELVRNCLRMRPERIIVGEVRGPEAFDLLQAMNTGHDGSMGTLHANNPR 357 PNIEGEGQVTMRELVRNCLRMRPERIIVGEVRGPEAFDLLQAMNTGHDGSMGTLHANNPR Sbjct: 311 PNIEGEGQVTMRELVRNCLRMRPERIIVGEVRGPEAFDLLQAMNTGHDGSMGTLHANNPR 370 Query: 358 EALSRCESMITMGGFSLPSRTIREMICASVDIIVQAARLRDGSRRITHITEVMGMEGDTI 417 EALSRCESMITMGGFSLPSRTIREMICAS+D+I+QAARLRDGSRRITHITEVMGMEGDTI Sbjct: 371 EALSRCESMITMGGFSLPSRTIREMICASIDVIIQAARLRDGSRRITHITEVMGMEGDTI 430 Query: 418 ITQDIFLYDVVGEDANGKIIGKHRSTGIGRPRFWERARYYNEEKRLAAALDASD 471 ITQD+FLYD+VGED NG IIG+HRSTGIGRPRFWERARYYNEEKRLAAALDA++ Sbjct: 431 ITQDLFLYDMVGEDQNGHIIGRHRSTGIGRPRFWERARYYNEEKRLAAALDAAE 484 >ref|ZP_01044498.1| type II secretion system protein E [Nitrobacter sp. Nb-311A] gb|EAQ37279.1| type II secretion system protein E [Nitrobacter sp. Nb-311A] Length = 488 Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/460 (91%), Positives = 441/460 (95%), Gaps = 1/460 (0%) Query: 13 PAGAPAMSRESAAPAISSPPLAPSKPPP-APAVEARRSDNYYQVKATIFGALIEAIDLAQ 71 P S E A+P ++SPPLAP++P PA++ARRSD YYQVKATIFGALIEAIDLAQ Sbjct: 24 PTSNTQTSTEVASPKVASPPLAPARPATQTPAIDARRSDTYYQVKATIFGALIEAIDLAQ 83 Query: 72 LAKLDSESAREEIRDIVNEIIAIKNIVMSIAEQEELLDDICNDVLGYGPLEPLLSRDDIA 131 LAKLD ESAREEIRDIVNEIIAIKNIVMSIAEQEELLDDICNDVLGYGPLEPLLSRDDIA Sbjct: 84 LAKLDGESAREEIRDIVNEIIAIKNIVMSIAEQEELLDDICNDVLGYGPLEPLLSRDDIA 143 Query: 132 DIMVNGAGTVFIEVAGKIQRTGIRFRDNQQLLNICQRIVSQVGRRVDESSPICDARLADG 191 DIMVNGAGTVFIEVAGKIQRTGIRFRDNQQLLNICQRIVSQVGRRVDESSPICDARLADG Sbjct: 144 DIMVNGAGTVFIEVAGKIQRTGIRFRDNQQLLNICQRIVSQVGRRVDESSPICDARLADG 203 Query: 192 SRVNAIVPPLAIDGPALTIRKFKKDKLTLEQLVKFGAITPEGATILQIIGRVRCNVIISG 251 SRVNAIVPPLAIDGPALTIRKFKKDKLTL+QLVKFGAITPEG TILQIIGR R NV+ISG Sbjct: 204 SRVNAIVPPLAIDGPALTIRKFKKDKLTLDQLVKFGAITPEGGTILQIIGRCRANVLISG 263 Query: 252 GTGSGKTTLLNCLTNYIEHDERIITCEDAAELQLQQPHVVRLETRPPNIEGEGQVTMREL 311 GTGSGKTTLLNCLTNYI+HDERIITCEDAAELQLQQPHVVRLETRPPNIEGEGQVTMR+L Sbjct: 264 GTGSGKTTLLNCLTNYIDHDERIITCEDAAELQLQQPHVVRLETRPPNIEGEGQVTMRDL 323 Query: 312 VRNCLRMRPERIIVGEVRGPEAFDLLQAMNTGHDGSMGTLHANNPREALSRCESMITMGG 371 VRNCLRMRPERIIVGEVRGPEAFDLLQAMNTGHDGSMGTLHANNPREALSRCESMITMGG Sbjct: 324 VRNCLRMRPERIIVGEVRGPEAFDLLQAMNTGHDGSMGTLHANNPREALSRCESMITMGG 383 Query: 372 FSLPSRTIREMICASVDIIVQAARLRDGSRRITHITEVMGMEGDTIITQDIFLYDVVGED 431 F+LPSRTIREMICAS+DII+QAARLRDGSRRITHITE+MGMEG+TIITQDIFLYD++GED Sbjct: 384 FALPSRTIREMICASIDIIIQAARLRDGSRRITHITELMGMEGETIITQDIFLYDLIGED 443 Query: 432 ANGKIIGKHRSTGIGRPRFWERARYYNEEKRLAAALDASD 471 ANG +IG+HRSTGIGRPRFWERARYYNEEKRLAAALDA++ Sbjct: 444 ANGNVIGRHRSTGIGRPRFWERARYYNEEKRLAAALDAAE 483 >ref|YP_575739.1| type II secretion system protein E [Nitrobacter hamburgensis X14] gb|ABE61279.1| type II secretion system protein E [Nitrobacter hamburgensis X14] Length = 489 Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/457 (91%), Positives = 442/457 (96%), Gaps = 4/457 (0%) Query: 16 APAMSRESAAPAISSPPLAPSKPPP-APAVEARRSDNYYQVKATIFGALIEAIDLAQLAK 74 APA E A+P ++SPPLAP++ P PA++ARRS+ YYQVKATIFGALIEAIDLAQLAK Sbjct: 31 APA---EIASPTVASPPLAPARSAPHTPAIDARRSETYYQVKATIFGALIEAIDLAQLAK 87 Query: 75 LDSESAREEIRDIVNEIIAIKNIVMSIAEQEELLDDICNDVLGYGPLEPLLSRDDIADIM 134 LD ESAREEIRDIVNEIIAIKNIVMSIAEQEELLDDICNDVLGYGPLEPLLSRDDIADIM Sbjct: 88 LDGESAREEIRDIVNEIIAIKNIVMSIAEQEELLDDICNDVLGYGPLEPLLSRDDIADIM 147 Query: 135 VNGAGTVFIEVAGKIQRTGIRFRDNQQLLNICQRIVSQVGRRVDESSPICDARLADGSRV 194 VNGAGTVFIEVAGKIQRTGIRFRDNQQLLNICQRIVSQVGRRVDESSPICDARLADGSRV Sbjct: 148 VNGAGTVFIEVAGKIQRTGIRFRDNQQLLNICQRIVSQVGRRVDESSPICDARLADGSRV 207 Query: 195 NAIVPPLAIDGPALTIRKFKKDKLTLEQLVKFGAITPEGATILQIIGRVRCNVIISGGTG 254 NAIVPPLAIDGPALTIRKF+KDKLTL+QLVKFGAITPEG TILQIIGR R NV+ISGGTG Sbjct: 208 NAIVPPLAIDGPALTIRKFRKDKLTLDQLVKFGAITPEGGTILQIIGRCRANVLISGGTG 267 Query: 255 SGKTTLLNCLTNYIEHDERIITCEDAAELQLQQPHVVRLETRPPNIEGEGQVTMRELVRN 314 SGKTTLLNCLTNYI+HDERIITCEDAAELQLQQPHVVRLETRPPNIEGEGQV+MRELVRN Sbjct: 268 SGKTTLLNCLTNYIDHDERIITCEDAAELQLQQPHVVRLETRPPNIEGEGQVSMRELVRN 327 Query: 315 CLRMRPERIIVGEVRGPEAFDLLQAMNTGHDGSMGTLHANNPREALSRCESMITMGGFSL 374 CLRMRPERIIVGEVRGPEAFDLLQAMNTGHDGSMGTLHANNPREALSRCESMITMGGF+L Sbjct: 328 CLRMRPERIIVGEVRGPEAFDLLQAMNTGHDGSMGTLHANNPREALSRCESMITMGGFAL 387 Query: 375 PSRTIREMICASVDIIVQAARLRDGSRRITHITEVMGMEGDTIITQDIFLYDVVGEDANG 434 PSRTIREMICAS+DII+QAARLRDGSRRITHITEVMGMEGDTIITQDIF+YD++GEDANG Sbjct: 388 PSRTIREMICASIDIIIQAARLRDGSRRITHITEVMGMEGDTIITQDIFIYDLLGEDANG 447 Query: 435 KIIGKHRSTGIGRPRFWERARYYNEEKRLAAALDASD 471 ++G+HRSTGIGRPRFWERARYYNEEKRLAAALDA++ Sbjct: 448 NVVGRHRSTGIGRPRFWERARYYNEEKRLAAALDAAE 484 >ref|YP_001993174.1| type II secretion system protein E [Rhodopseudomonas palustris TIE-1] gb|ACF02699.1| type II secretion system protein E [Rhodopseudomonas palustris TIE-1] Length = 484 Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/473 (89%), Positives = 449/473 (94%), Gaps = 6/473 (1%) Query: 1 VRAPKPAFQAPEPAGAPAMSRESAAPAISSPPLAPSKPPPAPA--VEARRSDNYYQVKAT 58 VRAPKPA +PEPA M P +SSPPLAP++ P AP VE RRS+NYYQVKAT Sbjct: 11 VRAPKPASFSPEPA----MRAAEPKPVVSSPPLAPARAPSAPPVAVETRRSENYYQVKAT 66 Query: 59 IFGALIEAIDLAQLAKLDSESAREEIRDIVNEIIAIKNIVMSIAEQEELLDDICNDVLGY 118 IFGALIEAIDLAQLAKLD ESAREEIRDIVNEIIAIKNIVMSIAEQEELLDDICNDVLGY Sbjct: 67 IFGALIEAIDLAQLAKLDGESAREEIRDIVNEIIAIKNIVMSIAEQEELLDDICNDVLGY 126 Query: 119 GPLEPLLSRDDIADIMVNGAGTVFIEVAGKIQRTGIRFRDNQQLLNICQRIVSQVGRRVD 178 GPLEPLLSRDDI+DIMVNGAGTV+IEVAG+IQRTGIRFRDNQQLLNICQRIVSQVGRRVD Sbjct: 127 GPLEPLLSRDDISDIMVNGAGTVYIEVAGRIQRTGIRFRDNQQLLNICQRIVSQVGRRVD 186 Query: 179 ESSPICDARLADGSRVNAIVPPLAIDGPALTIRKFKKDKLTLEQLVKFGAITPEGATILQ 238 ESSPICDARLADGSRVNAIVPPLAIDGPALTIRKFKKDKLTL+QLVKFGAITPEGA ILQ Sbjct: 187 ESSPICDARLADGSRVNAIVPPLAIDGPALTIRKFKKDKLTLDQLVKFGAITPEGAQILQ 246 Query: 239 IIGRVRCNVIISGGTGSGKTTLLNCLTNYIEHDERIITCEDAAELQLQQPHVVRLETRPP 298 IIGRVRCNV+ISGGTGSGKTTLLNCLTNYI+ DERIITCEDAAELQLQQPHVVRLETRPP Sbjct: 247 IIGRVRCNVLISGGTGSGKTTLLNCLTNYIDDDERIITCEDAAELQLQQPHVVRLETRPP 306 Query: 299 NIEGEGQVTMRELVRNCLRMRPERIIVGEVRGPEAFDLLQAMNTGHDGSMGTLHANNPRE 358 NIEGEGQ+TMR+LVRNCLRMRPERIIVGEVRGPEAFDLLQAMNTGHDGSMGTLHANNPRE Sbjct: 307 NIEGEGQITMRDLVRNCLRMRPERIIVGEVRGPEAFDLLQAMNTGHDGSMGTLHANNPRE 366 Query: 359 ALSRCESMITMGGFSLPSRTIREMICASVDIIVQAARLRDGSRRITHITEVMGMEGDTII 418 ALSRCESMITMGGF+LPSRTIREMICAS+D+I+QAARLRDGSRRITHITEVMGMEGDTII Sbjct: 367 ALSRCESMITMGGFALPSRTIREMICASIDVIIQAARLRDGSRRITHITEVMGMEGDTII 426 Query: 419 TQDIFLYDVVGEDANGKIIGKHRSTGIGRPRFWERARYYNEEKRLAAALDASD 471 TQDIF+YD++GEDANG I+G+HRSTGIGRPRFWERARY+ EE+RLAAALDA++ Sbjct: 427 TQDIFVYDLLGEDANGHIVGRHRSTGIGRPRFWERARYFGEEQRLAAALDAAE 479 >ref|NP_768076.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46701.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] Length = 487 Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/463 (90%), Positives = 437/463 (94%) Query: 1 VRAPKPAFQAPEPAGAPAMSRESAAPAISSPPLAPSKPPPAPAVEARRSDNYYQVKATIF 60 +RAPKP +PEPA A A + A P + + PAPA+E RRSDNYY+VKATIF Sbjct: 12 LRAPKPGAVSPEPAPALAPTVSRAPPPPAVASPPLAPARPAPAMETRRSDNYYEVKATIF 71 Query: 61 GALIEAIDLAQLAKLDSESAREEIRDIVNEIIAIKNIVMSIAEQEELLDDICNDVLGYGP 120 GALIEAIDLAQLAKLDSESAREEIRDIVNEIIAIKNIVMSIAEQEELLDDICNDVLGYGP Sbjct: 72 GALIEAIDLAQLAKLDSESAREEIRDIVNEIIAIKNIVMSIAEQEELLDDICNDVLGYGP 131 Query: 121 LEPLLSRDDIADIMVNGAGTVFIEVAGKIQRTGIRFRDNQQLLNICQRIVSQVGRRVDES 180 LEPLLSRDDIADIMVNGA TV+IEV GKIQRTGIRFRDNQQLLNICQRIVSQVGRRVDES Sbjct: 132 LEPLLSRDDIADIMVNGANTVYIEVGGKIQRTGIRFRDNQQLLNICQRIVSQVGRRVDES 191 Query: 181 SPICDARLADGSRVNAIVPPLAIDGPALTIRKFKKDKLTLEQLVKFGAITPEGATILQII 240 SPICDARLADGSRVNAIVPPL+IDGPALTIRKFKKDKLTL+QLVKFGAI+PEGA ILQII Sbjct: 192 SPICDARLADGSRVNAIVPPLSIDGPALTIRKFKKDKLTLDQLVKFGAISPEGAEILQII 251 Query: 241 GRVRCNVIISGGTGSGKTTLLNCLTNYIEHDERIITCEDAAELQLQQPHVVRLETRPPNI 300 GRVRCNV+ISGGTGSGKTTLLNCLTNYIEHDERIITCEDAAELQLQQPHVVRLETRPPNI Sbjct: 252 GRVRCNVLISGGTGSGKTTLLNCLTNYIEHDERIITCEDAAELQLQQPHVVRLETRPPNI 311 Query: 301 EGEGQVTMRELVRNCLRMRPERIIVGEVRGPEAFDLLQAMNTGHDGSMGTLHANNPREAL 360 EGEGQ+TMRELVRNCLRMRPERIIVGEVRGPEAFDLLQAMNTGHDGSMGTLHANNPREAL Sbjct: 312 EGEGQITMRELVRNCLRMRPERIIVGEVRGPEAFDLLQAMNTGHDGSMGTLHANNPREAL 371 Query: 361 SRCESMITMGGFSLPSRTIREMICASVDIIVQAARLRDGSRRITHITEVMGMEGDTIITQ 420 SRCESMITMGGFSLPSRTIREMICAS+D+IVQAARLRDGSRRITHITEVMGMEGDTIITQ Sbjct: 372 SRCESMITMGGFSLPSRTIREMICASIDVIVQAARLRDGSRRITHITEVMGMEGDTIITQ 431 Query: 421 DIFLYDVVGEDANGKIIGKHRSTGIGRPRFWERARYYNEEKRL 463 DIFLYD++GEDANGKIIG+HRSTGIGRP+FWERARYY +EKRL Sbjct: 432 DIFLYDMIGEDANGKIIGRHRSTGIGRPKFWERARYYGDEKRL 474