BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0143.0008.p (389 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768067.1| ABC transporter permease protein [Bradyrhizobiu... 634 e-180 ref|YP_001242841.1| oligopeptide ABC transporter membrane protei... 629 e-178 ref|YP_575732.1| binding-protein-dependent transport systems inn... 622 e-176 ref|YP_485392.1| binding-protein-dependent transport systems inn... 622 e-176 ref|YP_316910.1| binding-protein dependent transport system inne... 617 e-175 >ref|NP_768067.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46692.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 406 Score = 634 bits (1636), Expect = e-180, Method: Compositional matrix adjust. Identities = 324/389 (83%), Positives = 349/389 (89%), Gaps = 3/389 (0%) Query: 1 MLAPQPVETSTQSPLGEAVPATRHGFSPSPLNRRRWQNFKANRRGYWSFWIFLVLFVASL 60 ++AP P+ET+TQSPLGE VP TR F+PSPLNRRRWQNFKANRRGYWSFWIF+ LFV SL Sbjct: 17 VIAPTPIETTTQSPLGEIVPITRKPFAPSPLNRRRWQNFKANRRGYWSFWIFIALFVISL 76 Query: 61 FANFIANDKPLVVKYDGKLYWPVIFTYAETTFGGDFETAADYRDPYLQKQIAAKGGSMIW 120 FA IAND+P +VK+DG+LYWP TY+ETTFGGDFETAADYRDPYLQK I KGG+++W Sbjct: 77 FAELIANDRPFLVKFDGRLYWPAFVTYSETTFGGDFETAADYRDPYLQKLIKDKGGAIVW 136 Query: 121 PPIRYSYDSRNLDPPTAARVA---LLTEEQCKDVVKRKGLTGCRDLEYNWLGTDDQGRDV 177 P IRYSYD+ NLD PT A +LTE QCK VV++KGL CRDLEYNWLGTDDQGRDV Sbjct: 137 PLIRYSYDTHNLDLPTPAPSPPTWMLTEAQCKPVVEKKGLKSCRDLEYNWLGTDDQGRDV 196 Query: 178 VARLIYGFRISVLFGLTLTILSSIIGIAAGGVQGYFGGWTDLIFQRLIEIWTAIPSLYLL 237 VARLIYGFRISVLFGL LTI+SS+IGIAAG VQGYFGG DLIFQR IEIWTAIPSLYLL Sbjct: 197 VARLIYGFRISVLFGLCLTIISSVIGIAAGAVQGYFGGRVDLIFQRFIEIWTAIPSLYLL 256 Query: 238 LIISAVLPPGFFILLGILLLFSWVSLVGLVRAEFLRGRNFEYIQAARALGVSNGVIMFRH 297 LI+S+VL PGFF+LLGILLLFSWVSLVGLVRAEFLRGRNFEYIQAARALGVSN VIMFRH Sbjct: 257 LILSSVLVPGFFVLLGILLLFSWVSLVGLVRAEFLRGRNFEYIQAARALGVSNPVIMFRH 316 Query: 298 LLPNAMVATMTFLPFIVSSSVMTLTALDFLGFGLPPGSPSLGELLSQGKANVQAPWLGLT 357 LLPNAMVATMTFLPFIVSSSVMTLTALDFLGFGLPPGSPSLGELLSQ K+NVQAPWLG + Sbjct: 317 LLPNAMVATMTFLPFIVSSSVMTLTALDFLGFGLPPGSPSLGELLSQAKSNVQAPWLGFS 376 Query: 358 GFFSVAIMLSLLIFIGEAARDAFDPRKTF 386 GFFSVAIMLSLLIFIGEA RDAFDPRKTF Sbjct: 377 GFFSVAIMLSLLIFIGEAVRDAFDPRKTF 405 >ref|YP_001242841.1| oligopeptide ABC transporter membrane protein [Bradyrhizobium sp. BTAi1] gb|ABQ38935.1| putative oligopeptide transport protein (ABC superfamily, membrane) [Bradyrhizobium sp. BTAi1] Length = 391 Score = 629 bits (1622), Expect = e-178, Method: Compositional matrix adjust. Identities = 319/384 (83%), Positives = 341/384 (88%), Gaps = 3/384 (0%) Query: 6 PVETSTQSPLGEAVPATRHGFSPSPLNRRRWQNFKANRRGYWSFWIFLVLFVASLFANFI 65 PVET+TQ+PLGEAVP TRH F PSPLN+RRWQNFKANRRGYWS WIFL LF+ SLFA I Sbjct: 7 PVETTTQAPLGEAVPPTRHRFRPSPLNQRRWQNFKANRRGYWSLWIFLFLFIVSLFAELI 66 Query: 66 ANDKPLVVKYDGKLYWPVIFTYAETTFGGDFETAADYRDPYLQKQIAAKGGSMIWPPIRY 125 AND+P ++K+DG LYWP +Y ET FGGDFETAADYRDPYLQK IA KGG++IWP IRY Sbjct: 67 ANDRPFLIKFDGHLYWPAFVSYPETAFGGDFETAADYRDPYLQKLIADKGGTVIWPLIRY 126 Query: 126 SYDSRNLDPPTAARVA---LLTEEQCKDVVKRKGLTGCRDLEYNWLGTDDQGRDVVARLI 182 SY + NLD PT A +LTE QCK VV++KGL CRDLEYNWLGTDDQGRDVVARLI Sbjct: 127 SYATHNLDLPTPAPSPPTWMLTEAQCKPVVEKKGLKSCRDLEYNWLGTDDQGRDVVARLI 186 Query: 183 YGFRISVLFGLTLTILSSIIGIAAGGVQGYFGGWTDLIFQRLIEIWTAIPSLYLLLIISA 242 YGFRISVLFGL+LT SSIIGIAAGGVQGYFGGW DL+FQR IEIW AIP LYLLLI+SA Sbjct: 187 YGFRISVLFGLSLTFFSSIIGIAAGGVQGYFGGWVDLLFQRFIEIWNAIPYLYLLLILSA 246 Query: 243 VLPPGFFILLGILLLFSWVSLVGLVRAEFLRGRNFEYIQAARALGVSNGVIMFRHLLPNA 302 VL PGFF LLGI+LLFSWVSLVGLVRAEFLRGRNFEYIQAARALGVSN VIM+RHLLPNA Sbjct: 247 VLVPGFFTLLGIMLLFSWVSLVGLVRAEFLRGRNFEYIQAARALGVSNAVIMWRHLLPNA 306 Query: 303 MVATMTFLPFIVSSSVMTLTALDFLGFGLPPGSPSLGELLSQGKANVQAPWLGLTGFFSV 362 MVATMTFLPFIVSSSVMTLTALDFLGFGLPPGSPSLGE+LSQ KANVQAPWLGLTGFFSV Sbjct: 307 MVATMTFLPFIVSSSVMTLTALDFLGFGLPPGSPSLGEMLSQAKANVQAPWLGLTGFFSV 366 Query: 363 AIMLSLLIFIGEAARDAFDPRKTF 386 AIMLSLLIF+GEA RDAFDPRKTF Sbjct: 367 AIMLSLLIFVGEAVRDAFDPRKTF 390 >ref|YP_575732.1| binding-protein-dependent transport systems inner membrane component [Nitrobacter hamburgensis X14] gb|ABE61272.1| binding-protein-dependent transport systems inner membrane component [Nitrobacter hamburgensis X14] Length = 390 Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust. Identities = 315/389 (80%), Positives = 343/389 (88%), Gaps = 3/389 (0%) Query: 1 MLAPQPVETSTQSPLGEAVPATRHGFSPSPLNRRRWQNFKANRRGYWSFWIFLVLFVASL 60 M +P+P+E SPLGEAVP TRH SPLNRRRWQ+FK+NRRGYWS WIFL+LF SL Sbjct: 1 MTSPKPIEAEAVSPLGEAVPPTRHSLRLSPLNRRRWQSFKSNRRGYWSLWIFLILFFISL 60 Query: 61 FANFIANDKPLVVKYDGKLYWPVIFTYAETTFGGDFETAADYRDPYLQKQIAAKGGSMIW 120 FA IAND+P ++++DG LY+P TY ET FGGDFETAADYRDPYLQK IA KGG+++W Sbjct: 61 FAELIANDRPFLIRFDGHLYFPAFVTYPETAFGGDFETAADYRDPYLQKLIANKGGTIVW 120 Query: 121 PPIRYSYDSRNLDPPTAARVA---LLTEEQCKDVVKRKGLTGCRDLEYNWLGTDDQGRDV 177 P IRYSYD+ NLD PT A LLTE +CKDVV+RK LTGCRDLEYNWLGTDDQGRDV Sbjct: 121 PLIRYSYDTHNLDLPTPAPSKPTWLLTEAECKDVVQRKHLTGCRDLEYNWLGTDDQGRDV 180 Query: 178 VARLIYGFRISVLFGLTLTILSSIIGIAAGGVQGYFGGWTDLIFQRLIEIWTAIPSLYLL 237 VARLIYGFRISVLFGL LTI+SS+IGIAAGGVQGYFGGW DL FQR IE+WTAIPSLYLL Sbjct: 181 VARLIYGFRISVLFGLCLTIVSSVIGIAAGGVQGYFGGWVDLGFQRFIEVWTAIPSLYLL 240 Query: 238 LIISAVLPPGFFILLGILLLFSWVSLVGLVRAEFLRGRNFEYIQAARALGVSNGVIMFRH 297 LI+S+VL PGFF+LLGILLLFSWVSLVGLVRAEFLRGRNFEYI AARALGVSN IMFRH Sbjct: 241 LILSSVLVPGFFVLLGILLLFSWVSLVGLVRAEFLRGRNFEYIMAARALGVSNATIMFRH 300 Query: 298 LLPNAMVATMTFLPFIVSSSVMTLTALDFLGFGLPPGSPSLGELLSQGKANVQAPWLGLT 357 LLPNAMVATMTFLPFIVSSSVMTLTALDFLGFGLPPGSPSLGE+L+QGKANVQAPWLG T Sbjct: 301 LLPNAMVATMTFLPFIVSSSVMTLTALDFLGFGLPPGSPSLGEMLAQGKANVQAPWLGFT 360 Query: 358 GFFSVAIMLSLLIFIGEAARDAFDPRKTF 386 GFF++AIMLSLLIFIGEA RDAFDPRKTF Sbjct: 361 GFFALAIMLSLLIFIGEAVRDAFDPRKTF 389 >ref|YP_485392.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris HaA2] gb|ABD06481.1| Binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris HaA2] Length = 392 Score = 622 bits (1603), Expect = e-176, Method: Compositional matrix adjust. Identities = 315/389 (80%), Positives = 347/389 (89%), Gaps = 3/389 (0%) Query: 1 MLAPQPVETSTQSPLGEAVPATRHGFSPSPLNRRRWQNFKANRRGYWSFWIFLVLFVASL 60 ++A +P+E++TQ+PLGEAVP TRH S SPLN+RRWQNFKANRRGYWS WIFLVLF SL Sbjct: 3 LIAREPIESTTQAPLGEAVPPTRHRLSISPLNKRRWQNFKANRRGYWSLWIFLVLFGVSL 62 Query: 61 FANFIANDKPLVVKYDGKLYWPVIFTYAETTFGGDFETAADYRDPYLQKQIAAKGGSMIW 120 FA FIAND+PL++K+DG Y P + +YAETTFGGDFETAADYRDPYLQK IA KGG++IW Sbjct: 63 FAEFIANDRPLLIKFDGHYYVPAVVSYAETTFGGDFETAADYRDPYLQKLIADKGGTVIW 122 Query: 121 PPIRYSYDSRNLDPPTAARVA---LLTEEQCKDVVKRKGLTGCRDLEYNWLGTDDQGRDV 177 PIRYSY + NLD PT A LLTE +C+ VV++KGL C DLEYNWLGTDDQGRDV Sbjct: 123 APIRYSYGTHNLDLPTPAPSKPTWLLTEAECRTVVEKKGLKSCSDLEYNWLGTDDQGRDV 182 Query: 178 VARLIYGFRISVLFGLTLTILSSIIGIAAGGVQGYFGGWTDLIFQRLIEIWTAIPSLYLL 237 VARLIYGFRISVLFGL+LTI+SS+IG+AAGG+QGYFGGW DL FQR IE+WTAIPSLYLL Sbjct: 183 VARLIYGFRISVLFGLSLTIISSVIGVAAGGIQGYFGGWVDLGFQRFIEVWTAIPSLYLL 242 Query: 238 LIISAVLPPGFFILLGILLLFSWVSLVGLVRAEFLRGRNFEYIQAARALGVSNGVIMFRH 297 LI+S+VL PGFF+LLGILLLFSWVSLVGLVRAEFLRGRNFEYI AARALGVSN IM RH Sbjct: 243 LILSSVLVPGFFVLLGILLLFSWVSLVGLVRAEFLRGRNFEYIMAARALGVSNAKIMVRH 302 Query: 298 LLPNAMVATMTFLPFIVSSSVMTLTALDFLGFGLPPGSPSLGELLSQGKANVQAPWLGLT 357 LLPNAMVATMTFLPFIVSSSVMTLTALDFLGFGLPPGSPSLGELL+QGKANVQAPWLG T Sbjct: 303 LLPNAMVATMTFLPFIVSSSVMTLTALDFLGFGLPPGSPSLGELLAQGKANVQAPWLGFT 362 Query: 358 GFFSVAIMLSLLIFIGEAARDAFDPRKTF 386 GFF+VAIMLSLLIFIGEA RDAFDPRKTF Sbjct: 363 GFFAVAIMLSLLIFIGEAVRDAFDPRKTF 391 >ref|YP_316910.1| binding-protein dependent transport system inner membrane protein [Nitrobacter winogradskyi Nb-255] gb|ABA03558.1| Binding-protein-dependent transport systems inner membrane component [Nitrobacter winogradskyi Nb-255] Length = 390 Score = 617 bits (1592), Expect = e-175, Method: Compositional matrix adjust. Identities = 316/389 (81%), Positives = 341/389 (87%), Gaps = 3/389 (0%) Query: 1 MLAPQPVETSTQSPLGEAVPATRHGFSPSPLNRRRWQNFKANRRGYWSFWIFLVLFVASL 60 M + PVE SPLGEAVP RH SPLNRRRWQNFKANRRGYWS WIFL+LF SL Sbjct: 1 MTSTTPVEAGATSPLGEAVPPARHSLGMSPLNRRRWQNFKANRRGYWSLWIFLILFGLSL 60 Query: 61 FANFIANDKPLVVKYDGKLYWPVIFTYAETTFGGDFETAADYRDPYLQKQIAAKGGSMIW 120 FA IAND+P ++++DG LY+P TY ET FGGDFETAADYRDPYLQK IA KGG+++W Sbjct: 61 FAELIANDRPFLIRFDGHLYFPAFVTYPETAFGGDFETAADYRDPYLQKLIADKGGTIVW 120 Query: 121 PPIRYSYDSRNLDPPTAARVA---LLTEEQCKDVVKRKGLTGCRDLEYNWLGTDDQGRDV 177 PPIRYSYD+ NLD PT A LLTE +CKDVV+RK L+GCRDLEYNWLGTDDQGRDV Sbjct: 121 PPIRYSYDTHNLDLPTPAPSKPTWLLTEAECKDVVQRKNLSGCRDLEYNWLGTDDQGRDV 180 Query: 178 VARLIYGFRISVLFGLTLTILSSIIGIAAGGVQGYFGGWTDLIFQRLIEIWTAIPSLYLL 237 VARLIYGFRISVLFGL LTI+SS+IGIAAGGVQGYFGGW DL FQR IE+WTAIPSLYLL Sbjct: 181 VARLIYGFRISVLFGLCLTIVSSVIGIAAGGVQGYFGGWVDLGFQRFIEVWTAIPSLYLL 240 Query: 238 LIISAVLPPGFFILLGILLLFSWVSLVGLVRAEFLRGRNFEYIQAARALGVSNGVIMFRH 297 LI+S++L PGFF+LLGILLLFSWVSLVGLVRAEFLRGRNFEYI AARALGVSN IMFRH Sbjct: 241 LILSSILVPGFFVLLGILLLFSWVSLVGLVRAEFLRGRNFEYITAARALGVSNATIMFRH 300 Query: 298 LLPNAMVATMTFLPFIVSSSVMTLTALDFLGFGLPPGSPSLGELLSQGKANVQAPWLGLT 357 LLPNAMVATMTFLPFIVSSSVMTLTALDFLGFGLPPGSPSLGE+L+QGKANVQAPWLG T Sbjct: 301 LLPNAMVATMTFLPFIVSSSVMTLTALDFLGFGLPPGSPSLGEMLAQGKANVQAPWLGFT 360 Query: 358 GFFSVAIMLSLLIFIGEAARDAFDPRKTF 386 GFFS+AIMLSLLIFIGEA RDAFDPRKTF Sbjct: 361 GFFSLAIMLSLLIFIGEAVRDAFDPRKTF 389