BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0143.0004.p (182 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768063.1| cytochrome c [Bradyrhizobium japonicum USDA 110... 274 3e-72 ref|YP_485388.1| cytochrome c, class I [Rhodopseudomonas palustr... 263 1e-68 ref|YP_004108006.1| cytochrome c class I [Rhodopseudomonas palus... 260 5e-68 ref|YP_002290402.1| cytochrome c -like protein [Oligotropha carb... 259 2e-67 ref|YP_001993186.1| cytochrome C class I [Rhodopseudomonas palus... 252 2e-65 >ref|NP_768063.1| cytochrome c [Bradyrhizobium japonicum USDA 110] sp|P30323.1|CYCM_BRAJA RecName: Full=Cytochrome c homolog gb|AAA26198.1| cytochrome c [Bradyrhizobium japonicum] dbj|BAC46688.1| cytochrome c [Bradyrhizobium japonicum USDA 110] Length = 184 Score = 274 bits (701), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 152/184 (82%), Positives = 167/184 (90%), Gaps = 2/184 (1%) Query: 1 MDSFELNKILGAVLGTCIVVLVMSFAASAKFAPKLPEKPGFEIAVKEESHGGGGEAAAAS 60 MDSFELNKILGAVLGTC+++LV SF A+A F+PK+PEKPGFEIAVKE++ G AAA+ Sbjct: 1 MDSFELNKILGAVLGTCLILLVTSFTANALFSPKMPEKPGFEIAVKEDAGHGKEGGAAAA 60 Query: 61 -SEPIEKLLQTASVEKGAAAAKKCQACHTFEKGGPNRVGPNLFGVVGEKKGEGR-GFNFS 118 SEPIEKLLQTASVEKGAAAAKKC ACHTFEKGGPNRVGPNL+GVVGE +GEGR GFNFS Sbjct: 61 ASEPIEKLLQTASVEKGAAAAKKCGACHTFEKGGPNRVGPNLYGVVGEARGEGRNGFNFS 120 Query: 119 AAMKGKGGEWTFDDLNKFLTNPKGFVPGTAMGFAGVPKDSERADIIAYLNSNSEHPAPLP 178 AAMKGKGG WTFDDLNKF+ NPKGF+PGTAMGFAG+PKDSERAD+IAYLNS SEHP PLP Sbjct: 121 AAMKGKGGTWTFDDLNKFIANPKGFIPGTAMGFAGIPKDSERADVIAYLNSLSEHPKPLP 180 Query: 179 TASK 182 TASK Sbjct: 181 TASK 184 >ref|YP_485388.1| cytochrome c, class I [Rhodopseudomonas palustris HaA2] gb|ABD06477.1| Cytochrome c, class I [Rhodopseudomonas palustris HaA2] Length = 183 Score = 263 bits (671), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 135/183 (73%), Positives = 152/183 (83%), Gaps = 1/183 (0%) Query: 1 MDSFELNKILGAVLGTCIVVLVMSFAASAKFAPKLPEKPGFEIAVKE-ESHGGGGEAAAA 59 MDSFELNKILGAVL TC+V+L+ +FAA A FAP EK G+ IAVKE E G A AA Sbjct: 1 MDSFELNKILGAVLATCLVLLLSNFAAQAIFAPDKVEKQGWAIAVKEAEPAPGKDAAPAA 60 Query: 60 SSEPIEKLLQTASVEKGAAAAKKCQACHTFEKGGPNRVGPNLFGVVGEKKGEGRGFNFSA 119 + EPIE LLQTASVEKG +AAKKC ACHTFEK GPNRVGPNL+G+VGEKKGEGRGFNFSA Sbjct: 61 APEPIENLLQTASVEKGVSAAKKCAACHTFEKDGPNRVGPNLYGIVGEKKGEGRGFNFSA 120 Query: 120 AMKGKGGEWTFDDLNKFLTNPKGFVPGTAMGFAGVPKDSERADIIAYLNSNSEHPAPLPT 179 AMK KGGEWTFDDLNKFL +PKG++PGTAMGFAG+ D ERAD+IAYLN NS+ P +PT Sbjct: 121 AMKAKGGEWTFDDLNKFLASPKGYIPGTAMGFAGISNDKERADLIAYLNKNSDTPEAIPT 180 Query: 180 ASK 182 A+K Sbjct: 181 AAK 183 >ref|YP_004108006.1| cytochrome c class I [Rhodopseudomonas palustris DX-1] gb|ADU43273.1| cytochrome c class I [Rhodopseudomonas palustris DX-1] Length = 184 Score = 260 bits (665), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 121/183 (66%), Positives = 149/183 (81%), Gaps = 1/183 (0%) Query: 1 MDSFELNKILGAVLGTCIVVLVMSFAASAKFAPKLPEKPGFEIAVKEESHGGGGEAAAAS 60 MD+FELNKI+GA+ GTC+++L+ +FAA A F+P PEK G+ IAVKE +AA + Sbjct: 1 MDTFELNKIVGAIFGTCLILLLSNFAAQAIFSPTKPEKQGYAIAVKEAEPAPSKDAAPKA 60 Query: 61 SEPIEKLLQTASVEKGAAAAKKCQACHTFEKGGPNRVGPNLFGVVGEKKGEGR-GFNFSA 119 EPIEKLLQTASV++G+ AA+KC ACHTFEK GPNRVGPNL+G+VG+ +GEGR GFNFSA Sbjct: 61 DEPIEKLLQTASVDQGSKAARKCAACHTFEKDGPNRVGPNLYGIVGDHRGEGRGGFNFSA 120 Query: 120 AMKGKGGEWTFDDLNKFLTNPKGFVPGTAMGFAGVPKDSERADIIAYLNSNSEHPAPLPT 179 AMK KGG WTFD+LNKFL NPKG++PGTAM FAG+P D ERAD+IAYLN NS+ P PLP Sbjct: 121 AMKAKGGAWTFDELNKFLANPKGYIPGTAMSFAGIPNDKERADLIAYLNKNSDKPEPLPA 180 Query: 180 ASK 182 ++ Sbjct: 181 TAE 183 >ref|YP_002290402.1| cytochrome c -like protein [Oligotropha carboxidovorans OM5] ref|YP_004631662.1| cytochrome c [Oligotropha carboxidovorans OM5] gb|ACI94537.1| putative cytochrome c -like protein [Oligotropha carboxidovorans OM5] gb|AEI01846.1| cytochrome c [Oligotropha carboxidovorans OM4] gb|AEI05421.1| cytochrome c [Oligotropha carboxidovorans OM5] Length = 170 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 124/169 (73%), Positives = 146/169 (86%), Gaps = 1/169 (0%) Query: 1 MDSFELNKILGAVLGTCIVVLVMSFAASAKFAPKLPEKPGFEIAVKEESHGGGGEAAAAS 60 MDSFELNKI+GA+LGTC+V+LV +FAA A FAP+ PEKPGFEIAVKE++ GG EA A+ Sbjct: 1 MDSFELNKIMGAILGTCLVLLVTNFAAQAIFAPQKPEKPGFEIAVKEDASGGA-EATKAA 59 Query: 61 SEPIEKLLQTASVEKGAAAAKKCQACHTFEKGGPNRVGPNLFGVVGEKKGEGRGFNFSAA 120 PIE+LL ASVEKG AA+KKC ACHTF+KGGPN+VGPNLFGV+ E KGEGRGFNFSAA Sbjct: 60 EVPIEQLLANASVEKGQAASKKCAACHTFDKGGPNKVGPNLFGVIDEPKGEGRGFNFSAA 119 Query: 121 MKGKGGEWTFDDLNKFLTNPKGFVPGTAMGFAGVPKDSERADIIAYLNS 169 MK KGG WT +DLN+F+ +PKGFVPGTAMGFAG+ KDSERAD+IAY+ + Sbjct: 120 MKAKGGSWTIEDLNQFIKSPKGFVPGTAMGFAGISKDSERADLIAYMKT 168 >ref|YP_001993186.1| cytochrome C class I [Rhodopseudomonas palustris TIE-1] gb|ACF02711.1| cytochrome c class I [Rhodopseudomonas palustris TIE-1] Length = 184 Score = 252 bits (643), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 121/184 (65%), Positives = 145/184 (78%), Gaps = 2/184 (1%) Query: 1 MDSFELNKILGAVLGTCIVVLVMSFAASAKFAPKLPEKPGFEIAVKEESHGGGGEAAAAS 60 MD+FELNKI+GA+ GT +++L+ +F A A F+P PEK G+ I VKE +AA + Sbjct: 1 MDTFELNKIVGAIFGTLLILLLSNFTAQAIFSPTKPEKQGYAIVVKEAEPAQAKDAAPKA 60 Query: 61 SEPIEKLLQTASVEKGAAAAKKCQACHTFEKGGPNRVGPNLFGVVGEKKGEGR-GFNFSA 119 EPIEKLLQTASV++G+ AKKC ACHTFEK GPNRVGPNL+G+VG+ +GEGR GFNFSA Sbjct: 61 DEPIEKLLQTASVDQGSKVAKKCAACHTFEKDGPNRVGPNLYGIVGDHRGEGRNGFNFSA 120 Query: 120 AMKGKGGEWTFDDLNKFLTNPKGFVPGTAMGFAGVPKDSERADIIAYLNSNSEHPAPLP- 178 AMK KGG WTFD+LNKFL NPKG++PGTAM FAGVP D ERAD+IAYLN NS+ P LP Sbjct: 121 AMKAKGGAWTFDELNKFLANPKGYIPGTAMSFAGVPNDKERADLIAYLNKNSDKPEALPA 180 Query: 179 TASK 182 TA K Sbjct: 181 TAEK 184