BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0141.0014.p (422 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774771.1| DNA polymerase I [Bradyrhizobium japonicum USDA... 801 0.0 ref|YP_001243127.1| DNA polymerase I [Bradyrhizobium sp. BTAi1] ... 788 0.0 ref|YP_001202915.1| DNA polymerase I [Bradyrhizobium sp. ORS 278... 785 0.0 ref|YP_534698.1| DNA polymerase I [Rhodopseudomonas palustris Bi... 783 0.0 ref|YP_004111173.1| DNA polymerase I [Rhodopseudomonas palustris... 766 0.0 >ref|NP_774771.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110] dbj|BAC53396.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110] Length = 1023 Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/422 (93%), Positives = 409/422 (96%) Query: 1 VLKPRLVAERMATVYETLERPLVSVLARMERRGISIDRQVLSRLSGDFAQTAARVEAEIQ 60 VLKPRLVAE M TVYETLERPLV+VLARMERRGISIDRQVLSRLSGDFAQTAARVEAEIQ Sbjct: 602 VLKPRLVAEHMTTVYETLERPLVAVLARMERRGISIDRQVLSRLSGDFAQTAARVEAEIQ 661 Query: 61 EIAGEPVNVGSPKQIGDIIFGKMGLPGGSKTKTGAWSTTAQVLDELAEQGHEFPKKILEW 120 EIAGEPVNVGSPKQIGDI+FGKM LPGG+KTKTGAWSTTAQVLDELAEQGH+ PKKILEW Sbjct: 662 EIAGEPVNVGSPKQIGDILFGKMSLPGGTKTKTGAWSTTAQVLDELAEQGHDLPKKILEW 721 Query: 121 RQVSKLKSTYTDALPTYVNPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIR 180 RQVSKLKSTYTDALP YVNPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIR Sbjct: 722 RQVSKLKSTYTDALPEYVNPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIR 781 Query: 181 RAFIATPGHKLVSADYSQIELRLLAEIADVPVLRQAFRDGLDIHAMTASEMFGVPIKDMP 240 RAFIATPGHKLVSADYSQIELRLLAEIAD+PVL+QAFRDGLDIHAMTASEMFGVPIK MP Sbjct: 782 RAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIHAMTASEMFGVPIKGMP 841 Query: 241 SEVRRRAKAINFGIIYGISAFGLANQLGIAREEASAYIKKYFERFPGIRAYMDETKDFCR 300 SE+RRRAKAINFGIIYGISAFGLANQLGIAREEASAYIKKYFERFPGIRAYMDET+DFCR Sbjct: 842 SEIRRRAKAINFGIIYGISAFGLANQLGIAREEASAYIKKYFERFPGIRAYMDETRDFCR 901 Query: 301 RNGYVTTLFGRKCYYPDIKASNASVRAFNERAAINARLQGTAADIIRRAMIRVEDALTEK 360 ++GYVTTLFGRKC+YPDIKASNASVRAFNERAAINARLQGTAADIIRRAM RVEDAL EK Sbjct: 902 QHGYVTTLFGRKCHYPDIKASNASVRAFNERAAINARLQGTAADIIRRAMTRVEDALAEK 961 Query: 361 KLSAQMLLQVHDELIFEVPDDEVAATLPVVQKVMQDAPFPAVILSLPLQVDARAANNWDE 420 KLSAQMLLQVHDELIFEVPD EV ATLPVVQ VMQDAPFPAV+LS+PL VDARAA NWDE Sbjct: 962 KLSAQMLLQVHDELIFEVPDAEVEATLPVVQHVMQDAPFPAVLLSVPLHVDARAAKNWDE 1021 Query: 421 AH 422 AH Sbjct: 1022 AH 1023 >ref|YP_001243127.1| DNA polymerase I [Bradyrhizobium sp. BTAi1] gb|ABQ39221.1| DNA polymerase I [Bradyrhizobium sp. BTAi1] Length = 1020 Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/422 (90%), Positives = 412/422 (97%) Query: 1 VLKPRLVAERMATVYETLERPLVSVLARMERRGISIDRQVLSRLSGDFAQTAARVEAEIQ 60 VLKPRLVAERM VYETLERPLV+VLA+MERRGI+IDRQVLSRLSGDFAQTA RVEAE+Q Sbjct: 599 VLKPRLVAERMTAVYETLERPLVTVLAQMERRGIAIDRQVLSRLSGDFAQTAGRVEAELQ 658 Query: 61 EIAGEPVNVGSPKQIGDIIFGKMGLPGGSKTKTGAWSTTAQVLDELAEQGHEFPKKILEW 120 E+AGEP+NVGSPKQIGDI+FGKMGLPGG+KTKTGAWST+A +LD+LAEQG++F +KILEW Sbjct: 659 ELAGEPINVGSPKQIGDILFGKMGLPGGTKTKTGAWSTSASILDDLAEQGNDFARKILEW 718 Query: 121 RQVSKLKSTYTDALPTYVNPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIR 180 RQVSKLKSTYTDALPTYVNPQ+ RVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIR Sbjct: 719 RQVSKLKSTYTDALPTYVNPQSQRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIR 778 Query: 181 RAFIATPGHKLVSADYSQIELRLLAEIADVPVLRQAFRDGLDIHAMTASEMFGVPIKDMP 240 RAFIATPGHKLVSADYSQIELRLLAEIAD+PVL+QAF+DGLDIHAMTASEMFGVPIKDMP Sbjct: 779 RAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIHAMTASEMFGVPIKDMP 838 Query: 241 SEVRRRAKAINFGIIYGISAFGLANQLGIAREEASAYIKKYFERFPGIRAYMDETKDFCR 300 SEVRRRAKAINFGIIYGISAFGLANQLGIAREEASAYIK+YFERFPGIRAYMDET++FCR Sbjct: 839 SEVRRRAKAINFGIIYGISAFGLANQLGIAREEASAYIKRYFERFPGIRAYMDETREFCR 898 Query: 301 RNGYVTTLFGRKCYYPDIKASNASVRAFNERAAINARLQGTAADIIRRAMIRVEDALTEK 360 ++GYVTTLFGRKC+YP+IKASNASVRAFNERAAINARLQGTAADIIRRAM RVEDAL EK Sbjct: 899 KHGYVTTLFGRKCHYPEIKASNASVRAFNERAAINARLQGTAADIIRRAMTRVEDALAEK 958 Query: 361 KLSAQMLLQVHDELIFEVPDDEVAATLPVVQKVMQDAPFPAVILSLPLQVDARAANNWDE 420 KLSAQMLLQVHDELIFEVPDDEVAATLPVVQ VMQDAPFPAV+LS+PL VDARAA+NWDE Sbjct: 959 KLSAQMLLQVHDELIFEVPDDEVAATLPVVQHVMQDAPFPAVLLSVPLHVDARAADNWDE 1018 Query: 421 AH 422 AH Sbjct: 1019 AH 1020 >ref|YP_001202915.1| DNA polymerase I [Bradyrhizobium sp. ORS 278] emb|CAL74677.1| DNA polymerase I (POL I) [Bradyrhizobium sp. ORS 278] Length = 1034 Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/422 (90%), Positives = 411/422 (97%) Query: 1 VLKPRLVAERMATVYETLERPLVSVLARMERRGISIDRQVLSRLSGDFAQTAARVEAEIQ 60 VLKPRL AERM VYETLERPLVSVLARMERRGISIDRQVLSRLSGDFAQTAARVEAE+Q Sbjct: 613 VLKPRLTAERMTAVYETLERPLVSVLARMERRGISIDRQVLSRLSGDFAQTAARVEAELQ 672 Query: 61 EIAGEPVNVGSPKQIGDIIFGKMGLPGGSKTKTGAWSTTAQVLDELAEQGHEFPKKILEW 120 E+AGEP+NVGSPKQIGDI+FGKMGL GG++TKTGAWST+A +LD+LAEQG++F +KILEW Sbjct: 673 ELAGEPINVGSPKQIGDILFGKMGLSGGTRTKTGAWSTSASILDDLAEQGNDFARKILEW 732 Query: 121 RQVSKLKSTYTDALPTYVNPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIR 180 RQVSKLKSTYTDALPTYVNPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIR Sbjct: 733 RQVSKLKSTYTDALPTYVNPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIR 792 Query: 181 RAFIATPGHKLVSADYSQIELRLLAEIADVPVLRQAFRDGLDIHAMTASEMFGVPIKDMP 240 RAFIATPG+KLVSADYSQIELRLLAEIAD+PVL+QAF+DGLDIHAMTASEMFGVPIKDMP Sbjct: 793 RAFIATPGYKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIHAMTASEMFGVPIKDMP 852 Query: 241 SEVRRRAKAINFGIIYGISAFGLANQLGIAREEASAYIKKYFERFPGIRAYMDETKDFCR 300 SEVRRRAKAINFGIIYGISAFGLANQLGIAREEASAYIK+YFERFPGIRAYMDET++FCR Sbjct: 853 SEVRRRAKAINFGIIYGISAFGLANQLGIAREEASAYIKRYFERFPGIRAYMDETREFCR 912 Query: 301 RNGYVTTLFGRKCYYPDIKASNASVRAFNERAAINARLQGTAADIIRRAMIRVEDALTEK 360 +NGYV TLFGRKC+YP+IKASNASVRAFNERAAINARLQGTAADIIRRAM RVE+AL +K Sbjct: 913 KNGYVVTLFGRKCHYPEIKASNASVRAFNERAAINARLQGTAADIIRRAMTRVEEALAQK 972 Query: 361 KLSAQMLLQVHDELIFEVPDDEVAATLPVVQKVMQDAPFPAVILSLPLQVDARAANNWDE 420 KLSAQMLLQVHDELIFEVP+DEVAATLPVVQ VMQDAPFPAV+LS+PL VDARAA+NWDE Sbjct: 973 KLSAQMLLQVHDELIFEVPEDEVAATLPVVQHVMQDAPFPAVLLSVPLHVDARAADNWDE 1032 Query: 421 AH 422 AH Sbjct: 1033 AH 1034 >ref|YP_534698.1| DNA polymerase I [Rhodopseudomonas palustris BisB18] gb|ABD90379.1| DNA polymerase I [Rhodopseudomonas palustris BisB18] Length = 1021 Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/422 (90%), Positives = 409/422 (96%) Query: 1 VLKPRLVAERMATVYETLERPLVSVLARMERRGISIDRQVLSRLSGDFAQTAARVEAEIQ 60 VLKPRLVAERM TVYETLERPL+ VLARMERRGISIDR VL+RLSGDFAQTAAR+EAEI+ Sbjct: 600 VLKPRLVAERMTTVYETLERPLIGVLARMERRGISIDRAVLARLSGDFAQTAARIEAEIR 659 Query: 61 EIAGEPVNVGSPKQIGDIIFGKMGLPGGSKTKTGAWSTTAQVLDELAEQGHEFPKKILEW 120 EIAGE +N+GSPKQ+GDI+FGKM LPGGSKTKTGAWST+AQVL+ELAEQGHEFP+KIL+W Sbjct: 660 EIAGEEINIGSPKQLGDILFGKMQLPGGSKTKTGAWSTSAQVLEELAEQGHEFPRKILDW 719 Query: 121 RQVSKLKSTYTDALPTYVNPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIR 180 RQVSKL+STYTDALPTYV+PQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIR Sbjct: 720 RQVSKLRSTYTDALPTYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIR 779 Query: 181 RAFIATPGHKLVSADYSQIELRLLAEIADVPVLRQAFRDGLDIHAMTASEMFGVPIKDMP 240 RAFIA PGHKLVSADYSQIELRLLAEIAD+PVL+QAF+DGLDIHAMTASEMFGVPIKDMP Sbjct: 780 RAFIAAPGHKLVSADYSQIELRLLAEIADIPVLKQAFQDGLDIHAMTASEMFGVPIKDMP 839 Query: 241 SEVRRRAKAINFGIIYGISAFGLANQLGIAREEASAYIKKYFERFPGIRAYMDETKDFCR 300 SEVRRRAKAINFGIIYGISAFGLANQLGI REEA AYIKKYFERFPGIRAYMD T+DFCR Sbjct: 840 SEVRRRAKAINFGIIYGISAFGLANQLGIPREEAGAYIKKYFERFPGIRAYMDATRDFCR 899 Query: 301 RNGYVTTLFGRKCYYPDIKASNASVRAFNERAAINARLQGTAADIIRRAMIRVEDALTEK 360 +G+V TLFGRKC+YPDIKASNASVRAFNERAAINARLQGTAADIIRRAM+R+EDAL EK Sbjct: 900 AHGFVETLFGRKCHYPDIKASNASVRAFNERAAINARLQGTAADIIRRAMVRMEDALAEK 959 Query: 361 KLSAQMLLQVHDELIFEVPDDEVAATLPVVQKVMQDAPFPAVILSLPLQVDARAANNWDE 420 KLSAQMLLQVHDELIFEV DDEVAATLPVVQ+VMQDAPFPAV+LS+PLQVDARAANNWDE Sbjct: 960 KLSAQMLLQVHDELIFEVADDEVAATLPVVQQVMQDAPFPAVLLSVPLQVDARAANNWDE 1019 Query: 421 AH 422 AH Sbjct: 1020 AH 1021 >ref|YP_004111173.1| DNA polymerase I [Rhodopseudomonas palustris DX-1] gb|ADU46440.1| DNA polymerase I [Rhodopseudomonas palustris DX-1] Length = 1027 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/422 (88%), Positives = 404/422 (95%) Query: 1 VLKPRLVAERMATVYETLERPLVSVLARMERRGISIDRQVLSRLSGDFAQTAARVEAEIQ 60 VLKPRLVA M VYETLERPLV VLARMERRGISIDRQVLSRLS DFAQTAAR+EAEI+ Sbjct: 606 VLKPRLVAGSMTAVYETLERPLVGVLARMERRGISIDRQVLSRLSSDFAQTAARIEAEIR 665 Query: 61 EIAGEPVNVGSPKQIGDIIFGKMGLPGGSKTKTGAWSTTAQVLDELAEQGHEFPKKILEW 120 E+AGE +N+GSPKQ+GDI+FGKMGLPGGSKTKTGAWST+AQVLDELAEQGHEFPKKILEW Sbjct: 666 ELAGEDINIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPKKILEW 725 Query: 121 RQVSKLKSTYTDALPTYVNPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIR 180 RQVSKL+STYTDALP YV+PQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIR Sbjct: 726 RQVSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIR 785 Query: 181 RAFIATPGHKLVSADYSQIELRLLAEIADVPVLRQAFRDGLDIHAMTASEMFGVPIKDMP 240 RAF+ATPGHKLVSADYSQIELRLL+E+ADVP LR+AF+DG+DIHAMTASEMFGVP++ MP Sbjct: 786 RAFVATPGHKLVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEGMP 845 Query: 241 SEVRRRAKAINFGIIYGISAFGLANQLGIAREEASAYIKKYFERFPGIRAYMDETKDFCR 300 SE+RRRAKAINFGIIYGISAFGLANQLGI REEA AYIK+YFERFPGIRAYMDET+DFCR Sbjct: 846 SEIRRRAKAINFGIIYGISAFGLANQLGIPREEAGAYIKRYFERFPGIRAYMDETRDFCR 905 Query: 301 RNGYVTTLFGRKCYYPDIKASNASVRAFNERAAINARLQGTAADIIRRAMIRVEDALTEK 360 +GYVTTLFGRKC+YPDIKASN S+RAFNERAAINARLQG+AADIIRRAM+R+EDAL EK Sbjct: 906 AHGYVTTLFGRKCHYPDIKASNPSIRAFNERAAINARLQGSAADIIRRAMVRMEDALAEK 965 Query: 361 KLSAQMLLQVHDELIFEVPDDEVAATLPVVQKVMQDAPFPAVILSLPLQVDARAANNWDE 420 KLSAQMLLQVHDELIFEVP+ EV ATLPVV+ VMQDAPFPAVIL++PLQVDARAA+NWDE Sbjct: 966 KLSAQMLLQVHDELIFEVPEAEVEATLPVVRSVMQDAPFPAVILNVPLQVDARAADNWDE 1025 Query: 421 AH 422 AH Sbjct: 1026 AH 1027