BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0141.0001.p (333 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_576599.1| mandelate racemase/muconate lactonizing enzyme ... 505 e-141 ref|NP_772535.1| hypothetical protein blr5895 [Bradyrhizobium ja... 489 e-136 ref|YP_001993457.1| Mandelate racemase/muconate lactonizing prot... 487 e-135 ref|ZP_08630707.1| muconate cycloisomerase [Bradyrhizobiaceae ba... 487 e-135 ref|YP_001206999.1| mandelate racemase/muconate lactonizing fami... 477 e-133 >ref|YP_576599.1| mandelate racemase/muconate lactonizing enzyme [Nitrobacter hamburgensis X14] gb|ABE62139.1| mandelate racemase/muconate lactonizing enzyme [Nitrobacter hamburgensis X14] Length = 336 Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust. Identities = 261/326 (80%), Positives = 281/326 (86%) Query: 8 AISLTGRIERWPIAGTFTISRGAKTEAIVVVAEVSQGGLIGRGECVPYPRYGETPEATLL 67 A +L RIERWPIAG+FTISRGAKTEAIVVVAE+S GG GRGECVPY RYGETPE L Sbjct: 11 ATTLRCRIERWPIAGSFTISRGAKTEAIVVVAEISHGGHTGRGECVPYARYGETPEGVLA 70 Query: 68 AIQAMQAPLAGGMDRIPLQERMPAGAARNALDCALADLEAKRAGKRIWNLLGRPAPEPRT 127 ++ AMQAPLA G+DR L MPAGAARNALDCAL DLEAK +G+RIW LL RPAP PR+ Sbjct: 71 SLLAMQAPLAAGLDRQSLASAMPAGAARNALDCALYDLEAKCSGRRIWTLLDRPAPAPRS 130 Query: 128 TAYTISLGTPEAMAEATAKAAHRQLLKIKLGGDGDGARIAAVRKAAPRSELIVDANEAWT 187 TAYTISLG+PE MA ATAKAAHR LLKIKLGGDGD RIAAVRK A SELIVDANEAWT Sbjct: 131 TAYTISLGSPEVMAAATAKAAHRPLLKIKLGGDGDPERIAAVRKQARESELIVDANEAWT 190 Query: 188 EDNLAANLAACADAGVTLIEQPLPAGKDEALARIPRPVAVCADESVHDRGSLAGLRGRYD 247 NL NLAAC AGVTL+EQPLPAG DEALARI RP+AVCADESVHDR SL GLR RYD Sbjct: 191 PHNLERNLAACEAAGVTLVEQPLPAGNDEALARIRRPIAVCADESVHDRASLDGLRERYD 250 Query: 248 AVNIKLDKTGGLTEALAMADAARALGFEIMIGCMVATSLAMAPAMLIAQQARFVDLDGPL 307 A+NIKLDKTGGLTEALAMADAA+ LGFEIM+GCMVATSL+MAPAMLIAQQARF+DLDGPL Sbjct: 251 AINIKLDKTGGLTEALAMADAAQVLGFEIMVGCMVATSLSMAPAMLIAQQARFIDLDGPL 310 Query: 308 LLARDRDHGLRYEGSLVHPPDAALWG 333 LLA DR+ GLRY+GS V+PPDAALWG Sbjct: 311 LLAEDRNDGLRYDGSTVYPPDAALWG 336 >ref|NP_772535.1| hypothetical protein blr5895 [Bradyrhizobium japonicum USDA 110] dbj|BAC51160.1| blr5895 [Bradyrhizobium japonicum USDA 110] Length = 331 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 266/330 (80%), Positives = 285/330 (86%) Query: 4 TPSGAISLTGRIERWPIAGTFTISRGAKTEAIVVVAEVSQGGLIGRGECVPYPRYGETPE 63 T S +L RIER+PIAG+FTISRGAKTEA+ VVAEVSQ GL GRGECVPYPRYGETPE Sbjct: 2 TSSKVPALRARIERFPIAGSFTISRGAKTEAVTVVAEVSQNGLTGRGECVPYPRYGETPE 61 Query: 64 ATLLAIQAMQAPLAGGMDRIPLQERMPAGAARNALDCALADLEAKRAGKRIWNLLGRPAP 123 ATL A+QAMQA +AGG+ R LQ MP GAARNALDCAL DLEAK AG R W+LL RP P Sbjct: 62 ATLAAVQAMQAAVAGGITRQALQAAMPPGAARNALDCALIDLEAKAAGLRAWSLLDRPIP 121 Query: 124 EPRTTAYTISLGTPEAMAEATAKAAHRQLLKIKLGGDGDGARIAAVRKAAPRSELIVDAN 183 RTTAYTISLGTPEAMA ATAKAAHR LLKIKLGGDGD ARIAAVRKAAP SELIVDAN Sbjct: 122 GERTTAYTISLGTPEAMAAATAKAAHRPLLKIKLGGDGDDARIAAVRKAAPESELIVDAN 181 Query: 184 EAWTEDNLAANLAACADAGVTLIEQPLPAGKDEALARIPRPVAVCADESVHDRGSLAGLR 243 E+WTE NL NLAAC GVTL+EQPLPAGKD+ALARI RP+ VCADESVHDR SLA LR Sbjct: 182 ESWTEANLEHNLAACDAVGVTLVEQPLPAGKDDALARIRRPLVVCADESVHDRSSLAPLR 241 Query: 244 GRYDAVNIKLDKTGGLTEALAMADAARALGFEIMIGCMVATSLAMAPAMLIAQQARFVDL 303 RYDAVNIKLDKTGGLTEALAMADAA++LGFEIMIGCMVATSL+MAPAML+ QARFVDL Sbjct: 242 ERYDAVNIKLDKTGGLTEALAMADAAQSLGFEIMIGCMVATSLSMAPAMLVTPQARFVDL 301 Query: 304 DGPLLLARDRDHGLRYEGSLVHPPDAALWG 333 DGPLLLARDRDHGLRY+ SLV+PP +LWG Sbjct: 302 DGPLLLARDRDHGLRYDDSLVYPPSPSLWG 331 >ref|YP_001993457.1| Mandelate racemase/muconate lactonizing protein [Rhodopseudomonas palustris TIE-1] gb|ACF02982.1| Mandelate racemase/muconate lactonizing protein [Rhodopseudomonas palustris TIE-1] Length = 331 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 257/323 (79%), Positives = 275/323 (85%) Query: 11 LTGRIERWPIAGTFTISRGAKTEAIVVVAEVSQGGLIGRGECVPYPRYGETPEATLLAIQ 70 LTGRIERWPIAG FTISRGAKTEAIVVVAE+ G +GRGECVPY RYGETPEA L ++ Sbjct: 9 LTGRIERWPIAGAFTISRGAKTEAIVVVAELRCGDHVGRGECVPYARYGETPEAALAGLE 68 Query: 71 AMQAPLAGGMDRIPLQERMPAGAARNALDCALADLEAKRAGKRIWNLLGRPAPEPRTTAY 130 AM+APLAGG+DR LQ M GAARNALDCAL DLEAK +GKR W L G AP TTAY Sbjct: 69 AMRAPLAGGLDRTALQAAMQPGAARNALDCALVDLEAKMSGKRAWELFGSAAPSSTTTAY 128 Query: 131 TISLGTPEAMAEATAKAAHRQLLKIKLGGDGDGARIAAVRKAAPRSELIVDANEAWTEDN 190 TISLGTPE MAEAT KAA R LLKIKLGGDGD ARIAAVR+AAP ELIVDANEAWT DN Sbjct: 129 TISLGTPETMAEATCKAASRPLLKIKLGGDGDDARIAAVRRAAPNVELIVDANEAWTPDN 188 Query: 191 LAANLAACADAGVTLIEQPLPAGKDEALARIPRPVAVCADESVHDRGSLAGLRGRYDAVN 250 LA NLAACADAGVTL+EQPLPAG+DEAL I RP+AVCADESVHDR SLA LRGRYDAVN Sbjct: 189 LARNLAACADAGVTLVEQPLPAGRDEALGAIARPIAVCADESVHDRTSLAALRGRYDAVN 248 Query: 251 IKLDKTGGLTEALAMADAARALGFEIMIGCMVATSLAMAPAMLIAQQARFVDLDGPLLLA 310 IKLDKTGGLTEA+AMA ARALG +IM+GCMVATSLAMAPAML+ ARFVDLDGPLLLA Sbjct: 249 IKLDKTGGLTEAMAMAQDARALGLQIMVGCMVATSLAMAPAMLLTPFARFVDLDGPLLLA 308 Query: 311 RDRDHGLRYEGSLVHPPDAALWG 333 RDRD GLRY+GS V+PP+ ALWG Sbjct: 309 RDRDDGLRYDGSTVYPPEPALWG 331 >ref|ZP_08630707.1| muconate cycloisomerase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06561.1| muconate cycloisomerase [Bradyrhizobiaceae bacterium SG-6C] Length = 334 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 256/331 (77%), Positives = 289/331 (87%), Gaps = 5/331 (1%) Query: 8 AISLTGRIERWPIAGTFTISRGAKTEAIVVVAEVSQ-----GGLIGRGECVPYPRYGETP 62 +++L RIERWPIAG FTISRGAKTEA V+VAEVS+ G +IGRGECVPY RYGETP Sbjct: 4 SLTLAARIERWPIAGGFTISRGAKTEAAVIVAEVSRQSPNGGAIIGRGECVPYARYGETP 63 Query: 63 EATLLAIQAMQAPLAGGMDRIPLQERMPAGAARNALDCALADLEAKRAGKRIWNLLGRPA 122 EATL AI A++ G+DR LQ R+PAGAARNALDCAL DL+AK A KRIW L GRP Sbjct: 64 EATLEAILALRDAFHTGLDRQTLQSRLPAGAARNALDCALWDLDAKVAKKRIWELTGRPE 123 Query: 123 PEPRTTAYTISLGTPEAMAEATAKAAHRQLLKIKLGGDGDGARIAAVRKAAPRSELIVDA 182 P+P TTA+TISLGTPE+MAEAT+KAAHR LLKIKLGG+GD ARIAAVRKAAPRSELIVDA Sbjct: 124 PKPLTTAFTISLGTPESMAEATSKAAHRPLLKIKLGGEGDEARIAAVRKAAPRSELIVDA 183 Query: 183 NEAWTEDNLAANLAACADAGVTLIEQPLPAGKDEALARIPRPVAVCADESVHDRGSLAGL 242 NEAWT NLA +LAACA+AG T+IEQPLPAG+D+ALA I RPVAVCADESVHDR SL GL Sbjct: 184 NEAWTGGNLARHLAACAEAGATMIEQPLPAGQDQALASIKRPVAVCADESVHDRASLEGL 243 Query: 243 RGRYDAVNIKLDKTGGLTEALAMADAARALGFEIMIGCMVATSLAMAPAMLIAQQARFVD 302 R RYDA+NIKLDKTGGLTEALAMADAARALGF++M+GCMVATSLAMAPA+++AQ AR VD Sbjct: 244 RERYDAINIKLDKTGGLTEALAMADAARALGFDLMVGCMVATSLAMAPALVVAQGARVVD 303 Query: 303 LDGPLLLARDRDHGLRYEGSLVHPPDAALWG 333 LDGPLLLA+DRD+GLRY+GS V+PPDA+LWG Sbjct: 304 LDGPLLLAKDRDNGLRYDGSTVYPPDASLWG 334 >ref|YP_001206999.1| mandelate racemase/muconate lactonizing family protein [Bradyrhizobium sp. ORS 278] emb|CAL78782.1| Putative mandelate racemase/muconate lactonizing enzyme family [Bradyrhizobium sp. ORS 278] Length = 331 Score = 477 bits (1228), Expect = e-133, Method: Compositional matrix adjust. Identities = 247/330 (74%), Positives = 278/330 (84%) Query: 4 TPSGAISLTGRIERWPIAGTFTISRGAKTEAIVVVAEVSQGGLIGRGECVPYPRYGETPE 63 T +G L +I WPI+G+FTISRGAKTEA+ V+AE+ Q GL+GRGECVPYPRYGETPE Sbjct: 2 TSNGFPILDAQIGHWPISGSFTISRGAKTEAVTVIAELRQDGLVGRGECVPYPRYGETPE 61 Query: 64 ATLLAIQAMQAPLAGGMDRIPLQERMPAGAARNALDCALADLEAKRAGKRIWNLLGRPAP 123 L A+ AM+ +A G+ R LQ MP GAARNALDCAL DLEAKR+G+RIW+LLGR AP Sbjct: 62 GALGALLAMRDAIASGLGRDALQTAMPPGAARNALDCALLDLEAKRSGRRIWDLLGRRAP 121 Query: 124 EPRTTAYTISLGTPEAMAEATAKAAHRQLLKIKLGGDGDGARIAAVRKAAPRSELIVDAN 183 EP TAYTISL P+ MA+A AKAAHR LLKIKLGGDGD ARIAAVR AAP+S+LIVDAN Sbjct: 122 EPCVTAYTISLAAPDIMAKAAAKAAHRPLLKIKLGGDGDPARIAAVRGAAPQSQLIVDAN 181 Query: 184 EAWTEDNLAANLAACADAGVTLIEQPLPAGKDEALARIPRPVAVCADESVHDRGSLAGLR 243 E+WTE NL NLAACA+AGVTL+EQPLPAG+DEALAR+ RP+AVCADESVHDR SL GLR Sbjct: 182 ESWTEANLEINLAACAEAGVTLVEQPLPAGRDEALARMARPLAVCADESVHDRNSLDGLR 241 Query: 244 GRYDAVNIKLDKTGGLTEALAMADAARALGFEIMIGCMVATSLAMAPAMLIAQQARFVDL 303 GRYDAVNIKLDKTGGLTEALAMADAAR LGF+IM+GCMV TSL+MAPAML+ AR+VDL Sbjct: 242 GRYDAVNIKLDKTGGLTEALAMADAARTLGFDIMVGCMVGTSLSMAPAMLLTPLARYVDL 301 Query: 304 DGPLLLARDRDHGLRYEGSLVHPPDAALWG 333 DGPLLLA D HGL YE SLV+PPD ALWG Sbjct: 302 DGPLLLAEDCPHGLYYEDSLVYPPDQALWG 331