BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0140.0047.p         (43 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771777.1| hypothetical protein bll5137 [Bradyrhizobium ja...    63   1e-08
ref|ZP_08630271.1| hypothetical protein CSIRO_3375 [Bradyrhizobi...    57   7e-07
ref|YP_001240692.1| hypothetical protein BBta_4760 [Bradyrhizobi...    56   2e-06
ref|YP_570175.1| hypothetical protein RPD_3048 [Rhodopseudomonas...    55   5e-06
ref|YP_004108608.1| branched-chain amino acid transport [Rhodops...    54   6e-06

>ref|NP_771777.1| hypothetical protein bll5137 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50402.1| bll5137 [Bradyrhizobium japonicum USDA 110]
          Length = 116

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 36/43 (83%)

Query: 1   VPDWLRYGAVAAGFVVFMLGRKSIFAGVIAGEIVMIAGKYWLG 43
           VPD LRYGAV AG VVF+L R+SIFAGV+ GE+ M+AG +WLG
Sbjct: 74  VPDVLRYGAVGAGLVVFLLTRRSIFAGVVTGEVFMLAGTWWLG 116


>ref|ZP_08630271.1| hypothetical protein CSIRO_3375 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP07144.1| hypothetical protein CSIRO_3375 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 114

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 1   VPDWLRYGAVAAGFVVFMLGRKSIFAGVIAGEIVMIAGKYWLG 43
           VPD +RYGAV  G   F+  RKS+FAGV+AGEIV++AGK+WLG
Sbjct: 72  VPDVVRYGAVVVGVAGFLATRKSVFAGVVAGEIVVLAGKWWLG 114


>ref|YP_001240692.1| hypothetical protein BBta_4760 [Bradyrhizobium sp. BTAi1]
 gb|ABQ36786.1| putative membrane protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 114

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 32/39 (82%)

Query: 5   LRYGAVAAGFVVFMLGRKSIFAGVIAGEIVMIAGKYWLG 43
           LRYGAV AG   F+  R+SIFAGV+ GE+VM+AGK+WLG
Sbjct: 76  LRYGAVVAGLAAFLASRRSIFAGVVCGEMVMLAGKWWLG 114


>ref|YP_570175.1| hypothetical protein RPD_3048 [Rhodopseudomonas palustris BisB5]
 gb|ABE40274.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 114

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 1   VPDWLRYGAVAAGFVVFMLGRKSIFAGVIAGEIVMIAGKYWLG 43
           VP  LRYGAVAAG + F+  R+SI  GVIAGE V+IAG++WLG
Sbjct: 72  VPALLRYGAVAAGLLAFIAVRRSILIGVIAGEAVLIAGQWWLG 114


>ref|YP_004108608.1| branched-chain amino acid transport [Rhodopseudomonas palustris
           DX-1]
 gb|ADU43875.1| branched-chain amino acid transport [Rhodopseudomonas palustris
           DX-1]
          Length = 114

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 33/37 (89%)

Query: 5   LRYGAVAAGFVVFMLGRKSIFAGVIAGEIVMIAGKYW 41
           LRYG+VAAGF VF++ R+SIFAGV+AGE+V++ G+ W
Sbjct: 76  LRYGSVAAGFAVFLVARRSIFAGVVAGEVVLLLGQLW 112