BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0140.0042.p         (174 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_773294.1| transglycosylase [Bradyrhizobium japonicum USDA...   172   1e-41
ref|YP_001207594.1| hypothetical protein BRADO5708 [Bradyrhizobi...   162   1e-38
ref|YP_001242050.1| hypothetical protein BBta_6221 [Bradyrhizobi...   162   2e-38
ref|YP_578118.1| lytic transglycosylase, catalytic [Nitrobacter ...   147   4e-34
ref|YP_319068.1| lytic transglycosylase, catalytic [Nitrobacter ...   145   3e-33

>ref|NP_773294.1| transglycosylase [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51919.1| blr6654 [Bradyrhizobium japonicum USDA 110]
          Length = 208

 Score =  172 bits (437), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 83/103 (80%), Positives = 90/103 (87%)

Query: 33  MVAAEAQANLVPEELVHRVIVRESKYHPQLIGRGGTIGLMQIKLGTARGLGYTGTAEGLR 92
           MVAA A+AN VPE LVHRVI+RES+Y P L+G GGTIGLMQIKL TARGLGYTG A GLR
Sbjct: 58  MVAAHARANGVPEALVHRVIMRESRYQPGLVGHGGTIGLMQIKLATARGLGYTGDAAGLR 117

Query: 93  DPQTNLKYGIKYLAGAYRAANGNHDRAVRYFAGGYYYIAKRQR 135
           DP TNL Y +KYLAGAYRAANG+H RAVRYFAGGYYY+AKRQR
Sbjct: 118 DPNTNLTYAVKYLAGAYRAANGDHARAVRYFAGGYYYVAKRQR 160


>ref|YP_001207594.1| hypothetical protein BRADO5708 [Bradyrhizobium sp. ORS 278]
 emb|CAL79377.1| hypothetical protein; putative exported protein [Bradyrhizobium sp.
           ORS 278]
          Length = 260

 Score =  162 bits (411), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/107 (73%), Positives = 86/107 (80%)

Query: 29  QYEAMVAAEAQANLVPEELVHRVIVRESKYHPQLIGRGGTIGLMQIKLGTARGLGYTGTA 88
             +A+VA  A AN VPE LVHRVIVRESKY   L+GR G IGLMQIKLGTARGLGYTG A
Sbjct: 122 HIDALVAVHAAANNVPEALVHRVIVRESKYRQDLVGRCGCIGLMQIKLGTARGLGYTGDA 181

Query: 89  EGLRDPQTNLKYGIKYLAGAYRAANGNHDRAVRYFAGGYYYIAKRQR 135
            GL DP TNL YG++YLAGAYRAA+G+HDRAV YFA GYY  AKRQR
Sbjct: 182 AGLHDPNTNLTYGVRYLAGAYRAAHGDHDRAVAYFAKGYYEEAKRQR 228


>ref|YP_001242050.1| hypothetical protein BBta_6221 [Bradyrhizobium sp. BTAi1]
 gb|ABQ38144.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 277

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/107 (73%), Positives = 85/107 (79%)

Query: 29  QYEAMVAAEAQANLVPEELVHRVIVRESKYHPQLIGRGGTIGLMQIKLGTARGLGYTGTA 88
             +A+VA  A AN VPE L+HRVIVRESKY   L+GR G IGLMQIKLGTARGLGYTG A
Sbjct: 139 HIDALVAVHAAANDVPEALIHRVIVRESKYQKDLVGRCGCIGLMQIKLGTARGLGYTGDA 198

Query: 89  EGLRDPQTNLKYGIKYLAGAYRAANGNHDRAVRYFAGGYYYIAKRQR 135
            GL DP TNL YG+KYLAGAYRAA G+HDRAV YFA GYY  AKRQR
Sbjct: 199 AGLHDPNTNLTYGVKYLAGAYRAARGDHDRAVAYFAKGYYEEAKRQR 245


>ref|YP_578118.1| lytic transglycosylase, catalytic [Nitrobacter hamburgensis X14]
 gb|ABE63658.1| Lytic transglycosylase, catalytic [Nitrobacter hamburgensis X14]
          Length = 158

 Score =  147 bits (372), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/143 (66%), Positives = 111/143 (77%), Gaps = 9/143 (6%)

Query: 2   KTVQALGCLAAIAVLASCASAQAQSRAQYEAMVAAEAQANLVPEELVHRVIVRESKYHPQ 61
           K V  LG    + VLA    + AQ RAQYE+MVAA AQAN VP ELVHRVIVRES+Y+P+
Sbjct: 6   KCVPFLG----LVVLAWPQPSSAQ-RAQYESMVAAHAQANGVPVELVHRVIVRESRYNPR 60

Query: 62  LIGRGGTIGLMQIKLGTARGLGYTGTAEGLRDPQTNLKYGIKYLAGAYRAANGNHDRAVR 121
            + RG   G+MQIKL TARGLGYTGTAEGL DP+TNL Y ++YLAGAY+AA+GNHDRAV 
Sbjct: 61  AVHRG-NYGMMQIKLATARGLGYTGTAEGLLDPETNLTYAVRYLAGAYQAAHGNHDRAVA 119

Query: 122 YFAGGYYYIAKRQRGDRLKEAKH 144
           Y+AGGYYY AKRQ   RL+ A+H
Sbjct: 120 YYAGGYYYAAKRQ---RLQRARH 139


>ref|YP_319068.1| lytic transglycosylase, catalytic [Nitrobacter winogradskyi Nb-255]
 gb|ABA05716.1| lytic transglycosylase, catalytic [Nitrobacter winogradskyi Nb-255]
          Length = 158

 Score =  145 bits (365), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/144 (61%), Positives = 104/144 (72%), Gaps = 5/144 (3%)

Query: 1   MKTVQALGCLAAIAVLASCASAQAQSRAQYEAMVAAEAQANLVPEELVHRVIVRESKYHP 60
           M      G L     +A    + AQ RA+Y  MV A AQAN VP +LVHRVI+RES+Y+P
Sbjct: 1   MTNFSKFGPLLVFVAMAWPQPSTAQ-RAEYTTMVTAHAQANGVPVDLVHRVIMRESRYNP 59

Query: 61  QLIGRGGTIGLMQIKLGTARGLGYTGTAEGLRDPQTNLKYGIKYLAGAYRAANGNHDRAV 120
           + + RG   G+MQIKL TARGLGYTGTAEGL DP+TNL Y +KYLAGAYR ANGNHDRAV
Sbjct: 60  RAVHRGN-YGMMQIKLATARGLGYTGTAEGLLDPETNLTYAVKYLAGAYRLANGNHDRAV 118

Query: 121 RYFAGGYYYIAKRQRGDRLKEAKH 144
            Y+AGGYYY AKRQ   RL+ A+H
Sbjct: 119 AYYAGGYYYAAKRQ---RLQRARH 139