BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0140.0027.p (304 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769144.1| transcriptional regulator [Bradyrhizobium japon... 498 e-139 ref|ZP_08628661.1| LysR family regulatory protein [Bradyrhizobia... 465 e-129 ref|YP_001269003.1| LysR family transcriptional regulator [Pseud... 182 6e-44 ref|NP_744196.1| LysR family transcriptional regulator [Pseudomo... 180 2e-43 gb|ADR61196.1| LysR family transcriptional regulator [Pseudomona... 180 3e-43 >ref|NP_769144.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC47769.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 305 Score = 498 bits (1282), Expect = e-139, Method: Compositional matrix adjust. Identities = 248/293 (84%), Positives = 266/293 (90%) Query: 12 VALDALLREANVSRAAMRLNLSQPATSHALQRLRDLIGDPLLVRNGARMELTPRAQALRS 71 ALDALLREANVSRAAMR+ LSQPATSHALQRLRD+ GDPLLVR GARMELTPRAQALR+ Sbjct: 12 TALDALLREANVSRAAMRIGLSQPATSHALQRLRDIFGDPLLVRTGARMELTPRAQALRA 71 Query: 72 PLANALDQVRALFVSDDFDAARSDRHFRLMMPDLAVELLMPPLMEKVTLIAPNVTIDVVP 131 PLA ALDQVR LFV D+FDAARS+R FRLMMPDLAVELLMPPLMEKVT APNV +DVVP Sbjct: 72 PLAQALDQVRGLFVPDEFDAARSERQFRLMMPDLAVELLMPPLMEKVTRAAPNVRVDVVP 131 Query: 132 WRGPAIFTPEFARTIDLVISIGDSFKGFHRQRLYTDSDALAVRRGHGVGTKLKKREAFLA 191 WRGPAIF EFARTIDLVISIG++FKGFHRQ LYTDSDALAVRRGH +G KLK+RE FLA Sbjct: 132 WRGPAIFHAEFARTIDLVISIGNAFKGFHRQLLYTDSDALAVRRGHPMGAKLKRRETFLA 191 Query: 192 ARHVAVIIRGQNEDLIDTWLRAKGIERRIALVVPGYIEALHVTARTDLVAFVPRRLISAL 251 ARHV VIIRG +EDLIDTWLRAKGIER IALVV GY+EALHV ARTDLVAFVPRRLI+AL Sbjct: 192 ARHVGVIIRGNSEDLIDTWLRAKGIERHIALVVSGYLEALHVAARTDLVAFVPRRLIAAL 251 Query: 252 SKQLSLMTVTPPLDPGIDEQHMFYPTRAQMDPGSLWLRKLILETGRELEGRKA 304 S+QL L TVTPPLDPGIDEQ MFYPTRAQMD GS+WLR+L+LETGRELE R+A Sbjct: 252 SRQLGLDTVTPPLDPGIDEQFMFYPTRAQMDSGSIWLRRLMLETGRELEKRRA 304 >ref|ZP_08628661.1| LysR family regulatory protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08726.1| LysR family regulatory protein [Bradyrhizobiaceae bacterium SG-6C] Length = 316 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 240/300 (80%), Positives = 269/300 (89%) Query: 1 MNLNSVDLNLLVALDALLREANVSRAAMRLNLSQPATSHALQRLRDLIGDPLLVRNGARM 60 MNL S+DLNLLVALDALL EANV RAAMR+ LSQPA SHAL+RLR+++GDPLLVR GARM Sbjct: 10 MNLASLDLNLLVALDALLLEANVGRAAMRIGLSQPAASHALRRLREVLGDPLLVRTGARM 69 Query: 61 ELTPRAQALRSPLANALDQVRALFVSDDFDAARSDRHFRLMMPDLAVELLMPPLMEKVTL 120 ELTPRAQALR+PLA ALDQVR LF+ D+FDAARS+R FRLMMPDLAVELLMPPLM+K+ + Sbjct: 70 ELTPRAQALRAPLAQALDQVRGLFMPDEFDAARSERRFRLMMPDLAVELLMPPLMKKLDI 129 Query: 121 IAPNVTIDVVPWRGPAIFTPEFARTIDLVISIGDSFKGFHRQRLYTDSDALAVRRGHGVG 180 AP V IDVVPWRGPAIFT EFARTID+VISIGD+FKGFHRQ LYTDSDALAVR+GH G Sbjct: 130 AAPGVRIDVVPWRGPAIFTAEFARTIDMVISIGDAFKGFHRQLLYTDSDALAVRKGHPAG 189 Query: 181 TKLKKREAFLAARHVAVIIRGQNEDLIDTWLRAKGIERRIALVVPGYIEALHVTARTDLV 240 +LK ++ F ARHVAVIIRGQ+EDLIDTWLRAKG+ERRIALVVP YIEALHV ARTDLV Sbjct: 190 ARLKNKDTFFKARHVAVIIRGQSEDLIDTWLRAKGLERRIALVVPSYIEALHVAARTDLV 249 Query: 241 AFVPRRLISALSKQLSLMTVTPPLDPGIDEQHMFYPTRAQMDPGSLWLRKLILETGRELE 300 AFVPRRL++AL+KQLSL+TV PPLDPGIDEQ MFYPTRAQMDPGS+WLR L+L G ++E Sbjct: 250 AFVPRRLVAALAKQLSLITVAPPLDPGIDEQFMFYPTRAQMDPGSIWLRSLMLGIGHDME 309 >ref|YP_001269003.1| LysR family transcriptional regulator [Pseudomonas putida F1] gb|ABQ79819.1| transcriptional regulator, LysR family [Pseudomonas putida F1] Length = 326 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 120/298 (40%), Positives = 164/298 (55%), Gaps = 7/298 (2%) Query: 1 MNLNSVDLNLLVALDALLREANVSRAAMRLNLSQPATSHALQRLRDLIGDPLLVRNGARM 60 MN+++ DLNLL D LLRE NVSRAA RL L+QP S+AL RLRD +GDPLLVR G RM Sbjct: 26 MNISNFDLNLLRVFDMLLREQNVSRAAERLALTQPTVSNALARLRDQLGDPLLVRVGRRM 85 Query: 61 ELTPRAQALRSPLANALDQV-RALFVSDDFDAARSDRHFRLMMPDLAVELLMPPLMEKVT 119 TPRA AL P+ AL Q+ + L D F+ RS R R+ + D +L MPPL+ ++ Sbjct: 86 RPTPRALALEGPIRAALQQIEQTLGTGDGFEPQRSHRQLRIALTDFVEQLCMPPLLARLE 145 Query: 120 LIAPNVTIDVVPWRGPAIFTPEFAR-TIDLVISIGDSFKG-FHRQRLYTDSDALAVRRGH 177 L+APNV IDVV P + R +DLV+ D F R ++ +A+R+ H Sbjct: 146 LLAPNVRIDVVHL-APNLPAEALDRGDLDLVLGRFDEVPARFTRHPWRRETLQIALRQQH 204 Query: 178 G--VGTKLKKREAFLAARHVAVIIRGQNEDLIDTWLRAKGIERRIALVVPGYIEALHVTA 235 V + +AFL RH+ V GQ ++D WL +G+ R+IA P Y++A H+ A Sbjct: 205 PHLVPGQALDLDAFLGLRHIWV-HGGQTRGMVDQWLAEQGLTRQIAYTTPNYLQAAHLAA 263 Query: 236 RTDLVAFVPRRLISALSKQLSLMTVTPPLDPGIDEQHMFYPTRAQMDPGSLWLRKLIL 293 TD+ +PR+L + L L P E + + + Q DP WL + IL Sbjct: 264 ATDMCVVLPRQLAQQFAHLLPLAVYELPFALEPFELEVVHLSHRQHDPALAWLVEQIL 321 >ref|NP_744196.1| LysR family transcriptional regulator [Pseudomonas putida KT2440] gb|AAN67660.1|AE016396_2 transcriptional regulator, LysR family [Pseudomonas putida KT2440] Length = 307 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 121/299 (40%), Positives = 164/299 (54%), Gaps = 9/299 (3%) Query: 1 MNLNSVDLNLLVALDALLREANVSRAAMRLNLSQPATSHALQRLRDLIGDPLLVRNGARM 60 MN+++ DLNLL D LLRE NVSRAA RL L+QP S+AL RLRD +GDPLLVR G RM Sbjct: 7 MNISNFDLNLLRVFDMLLREQNVSRAAERLALTQPTVSNALARLRDQLGDPLLVRVGRRM 66 Query: 61 ELTPRAQALRSPLANALDQV-RALFVSDDFDAARSDRHFRLMMPDLAVELLMPPLMEKVT 119 TPRA AL P+ AL Q+ + L D F+ RS R R+ + D +L MPPL+ ++ Sbjct: 67 RPTPRALALEGPIRAALQQIEQTLGTGDGFEPQRSHRQLRIALTDFVEQLCMPPLLARLE 126 Query: 120 LIAPNVTIDVVPWRGPAIFTPEFAR-TIDLVISIGDSFKG-FHRQRLYTDSDALAVRRGH 177 L+APNV IDVV P + R +DLV+ D F R ++ +A+R+ H Sbjct: 127 LLAPNVRIDVVHL-APNLPAEALDRGDLDLVLGRFDEVPARFTRHPWRRETLQIALRQQH 185 Query: 178 ---GVGTKLKKREAFLAARHVAVIIRGQNEDLIDTWLRAKGIERRIALVVPGYIEALHVT 234 G L +AFL RH+ V GQ ++D WL +G+ R+IA P Y++A H+ Sbjct: 186 PHLAPGQALDL-DAFLGLRHIWV-HGGQTRGMVDQWLAEQGLTRQIAYTTPNYLQAAHLA 243 Query: 235 ARTDLVAFVPRRLISALSKQLSLMTVTPPLDPGIDEQHMFYPTRAQMDPGSLWLRKLIL 293 A TD+ +PR+L + L L P E + + + Q DP WL + IL Sbjct: 244 AATDMCVVLPRQLAQQFAHLLPLAVHELPFALEPFELEVVHLSHRQHDPALAWLVEQIL 302 >gb|ADR61196.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 307 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 119/298 (39%), Positives = 163/298 (54%), Gaps = 7/298 (2%) Query: 1 MNLNSVDLNLLVALDALLREANVSRAAMRLNLSQPATSHALQRLRDLIGDPLLVRNGARM 60 MN+++ DLNLL D LLRE NVSRAA RL L+QP S+AL RLRD +GDPLLVR G RM Sbjct: 7 MNISNFDLNLLRVFDMLLREQNVSRAAERLALTQPTVSNALARLRDQLGDPLLVRVGRRM 66 Query: 61 ELTPRAQALRSPLANALDQV-RALFVSDDFDAARSDRHFRLMMPDLAVELLMPPLMEKVT 119 TPRA AL P+ AL Q+ + L D F+ S R R+ + D +L MPPL+ ++ Sbjct: 67 RPTPRALALEGPIRAALQQIEQTLGTGDGFEPQHSHRQLRIALTDFVEQLCMPPLLARLE 126 Query: 120 LIAPNVTIDVVPWRGPAIFTPEFAR-TIDLVISIGDSFKG-FHRQRLYTDSDALAVRRGH 177 L+APNV IDVV P + R +DLV+ D F R ++ +A+R+ H Sbjct: 127 LLAPNVRIDVV-HLAPNLPAEALDRGDLDLVLGRFDEVPARFTRHPWRRETLQIALRQQH 185 Query: 178 G--VGTKLKKREAFLAARHVAVIIRGQNEDLIDTWLRAKGIERRIALVVPGYIEALHVTA 235 V + +AFL RH+ V GQ ++D WL +G+ R+IA P Y++A H+ A Sbjct: 186 PHLVPGQALDLDAFLGLRHIWV-HGGQTRGMVDQWLAEQGLTRQIAYTTPNYLQAAHLAA 244 Query: 236 RTDLVAFVPRRLISALSKQLSLMTVTPPLDPGIDEQHMFYPTRAQMDPGSLWLRKLIL 293 TD+ +PR+L + L L P E + + + Q DP WL + IL Sbjct: 245 ATDMCVVLPRQLAQQFAHLLPLAVHELPFALEPFELELVHLSHRQHDPALAWLVEQIL 302