BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0140.0007.p (267 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773403.1| hypothetical protein blr6763 [Bradyrhizobium ja... 392 e-107 ref|YP_001207694.1| putative Cof hydrolase [Bradyrhizobium sp. O... 377 e-103 ref|YP_001242143.1| putative Cof hydrolase [Bradyrhizobium sp. B... 372 e-101 ref|YP_533529.1| Cof protein [Rhodopseudomonas palustris BisB18]... 335 3e-90 ref|YP_782622.1| Cof-like hydrolase [Rhodopseudomonas palustris ... 335 5e-90 >ref|NP_773403.1| hypothetical protein blr6763 [Bradyrhizobium japonicum USDA 110] dbj|BAC52028.1| blr6763 [Bradyrhizobium japonicum USDA 110] Length = 270 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 187/265 (70%), Positives = 218/265 (82%) Query: 1 MTRIALVVSDVDGTLLTKDKTLTDGARAAVRRLHEAGIGFTIVSSRPTIGMGFLIAPLAI 60 MT I+LVVSDVDGTLLTKDKTLT+ AR+AV+RLH+AGIGFTI SSRP IGM FLI PLA+ Sbjct: 1 MTPISLVVSDVDGTLLTKDKTLTERARSAVQRLHQAGIGFTITSSRPAIGMRFLIEPLAL 60 Query: 61 TQPIGAFNGSSIVDPQLKPLEQHLIPAAVAKRCIDMLHERGVDIWLFTNDRWLTRNPDGE 120 P+G FNGSSIVDP++KP+EQHLIPA +R + +L E DIWLFT D+WL NP G+ Sbjct: 61 WLPVGPFNGSSIVDPEMKPVEQHLIPAGAVERSLQILREFRADIWLFTTDKWLIDNPGGK 120 Query: 121 YTAHEQHTIKHDPTIVSDFTPYLDQACKIVGASSDAALLRRGEVEMQQMVGRDATAVRSQ 180 Y AHEQHTI+ DPTIV+DF+PYL ACKIVGAS+DAA L R E MQ+ +G +ATAVRSQ Sbjct: 121 YVAHEQHTIRSDPTIVTDFSPYLASACKIVGASTDAAGLERCEKAMQEALGSEATAVRSQ 180 Query: 181 TYYLDVTPPGHDKGTFVEGIAKRLGVPLENVATIGDMQNDLPMFARSGVSFAMGNASDDV 240 TYYLD+TPPG +KGTFVE +AKRLG+ + VATIGDMQNDL MF SG S AMGNA+DDV Sbjct: 181 TYYLDITPPGFNKGTFVEAMAKRLGIATDTVATIGDMQNDLAMFRVSGTSIAMGNATDDV 240 Query: 241 KARATHVTETNEQDGFAHAMDTVLQ 265 K RATHVT TNEQDGFA AM+ +L+ Sbjct: 241 KDRATHVTATNEQDGFAEAMEMILK 265 >ref|YP_001207694.1| putative Cof hydrolase [Bradyrhizobium sp. ORS 278] emb|CAL79477.1| putative Cof hydrolase [Bradyrhizobium sp. ORS 278] Length = 270 Score = 377 bits (969), Expect = e-103, Method: Compositional matrix adjust. Identities = 176/264 (66%), Positives = 212/264 (80%) Query: 1 MTRIALVVSDVDGTLLTKDKTLTDGARAAVRRLHEAGIGFTIVSSRPTIGMGFLIAPLAI 60 MTRIALVVSDVDGTLLTKDK LT+ A A R L EAGI FTI SSRP IGMGFLIAPL I Sbjct: 1 MTRIALVVSDVDGTLLTKDKVLTERAAKAARELREAGIAFTITSSRPAIGMGFLIAPLQI 60 Query: 61 TQPIGAFNGSSIVDPQLKPLEQHLIPAAVAKRCIDMLHERGVDIWLFTNDRWLTRNPDGE 120 P+G FNGSSIV P+++PLEQ LIPA A+R +D+LH+RG+DIWLFT D WLTRNPDG+ Sbjct: 61 DLPVGPFNGSSIVSPEMRPLEQSLIPADAAERSVDLLHQRGIDIWLFTADAWLTRNPDGD 120 Query: 121 YTAHEQHTIKHDPTIVSDFTPYLDQACKIVGASSDAALLRRGEVEMQQMVGRDATAVRSQ 180 Y +EQ I+ DPTI+ DF PYL ACKIVGAS D LL R E EM++++G +ATAVRSQ Sbjct: 121 YVPNEQRAIRADPTIIGDFAPYLSSACKIVGASRDFDLLARCEAEMRELLGSEATAVRSQ 180 Query: 181 TYYLDVTPPGHDKGTFVEGIAKRLGVPLENVATIGDMQNDLPMFARSGVSFAMGNASDDV 240 +YYLD+TPPG +KGTFV +A+RLG+ L+ VATIGDM ND+ MF SG+S AMGNASDDV Sbjct: 181 SYYLDITPPGRNKGTFVTAMARRLGIALDQVATIGDMHNDVAMFEVSGLSIAMGNASDDV 240 Query: 241 KARATHVTETNEQDGFAHAMDTVL 264 K++A VT +N+ +GFA+AM+ +L Sbjct: 241 KSKARRVTTSNQDEGFANAMEMIL 264 >ref|YP_001242143.1| putative Cof hydrolase [Bradyrhizobium sp. BTAi1] gb|ABQ38237.1| putative Cof hydrolase [Bradyrhizobium sp. BTAi1] Length = 270 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 173/264 (65%), Positives = 212/264 (80%) Query: 1 MTRIALVVSDVDGTLLTKDKTLTDGARAAVRRLHEAGIGFTIVSSRPTIGMGFLIAPLAI 60 MTRIALVVSDVDGTLLTKDK LT+ A A R+L EAGI FTI SSRP IGMGFLIAPL I Sbjct: 1 MTRIALVVSDVDGTLLTKDKVLTERAAKAARQLREAGIAFTITSSRPAIGMGFLIAPLQI 60 Query: 61 TQPIGAFNGSSIVDPQLKPLEQHLIPAAVAKRCIDMLHERGVDIWLFTNDRWLTRNPDGE 120 P+G FNGSSI+DP ++PLEQ LIPA A RC+D+L +RG+DIW+FT+D WLTRN G+ Sbjct: 61 DLPVGPFNGSSIIDPAMRPLEQSLIPAGAAARCVDLLQQRGIDIWVFTSDAWLTRNAAGD 120 Query: 121 YTAHEQHTIKHDPTIVSDFTPYLDQACKIVGASSDAALLRRGEVEMQQMVGRDATAVRSQ 180 Y +EQ I+ DPTI SDF+PYL +ACKIVG+S D LL R E EM++++G +ATAVRSQ Sbjct: 121 YVPNEQRAIRADPTITSDFSPYLAKACKIVGSSRDFDLLARCEGEMRELLGTEATAVRSQ 180 Query: 181 TYYLDVTPPGHDKGTFVEGIAKRLGVPLENVATIGDMQNDLPMFARSGVSFAMGNASDDV 240 +YYLD+TPPG +KGTFV +A RLG+PL VATIGDM ND+ MF SG+S AMGNASD+V Sbjct: 181 SYYLDITPPGRNKGTFVTAMAARLGIPLSQVATIGDMHNDVAMFEVSGLSIAMGNASDEV 240 Query: 241 KARATHVTETNEQDGFAHAMDTVL 264 K+ AT VT +N+ +GFA+AM+ ++ Sbjct: 241 KSHATRVTTSNQDEGFANAMEMIV 264 >ref|YP_533529.1| Cof protein [Rhodopseudomonas palustris BisB18] gb|ABD89210.1| Cof protein [Rhodopseudomonas palustris BisB18] Length = 270 Score = 335 bits (860), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 161/265 (60%), Positives = 198/265 (74%) Query: 1 MTRIALVVSDVDGTLLTKDKTLTDGARAAVRRLHEAGIGFTIVSSRPTIGMGFLIAPLAI 60 M+RIALV+SDVDGTL+TKDK LT+ A+ AV RL AGIGFT+ SSRP +GM L+ PL + Sbjct: 1 MSRIALVISDVDGTLVTKDKRLTEAAQKAVARLRGAGIGFTVTSSRPPVGMRMLVDPLGL 60 Query: 61 TQPIGAFNGSSIVDPQLKPLEQHLIPAAVAKRCIDMLHERGVDIWLFTNDRWLTRNPDGE 120 P+G FNGSSIVDPQ LEQH IPA A + +L E +D WLFT D W DG+ Sbjct: 61 DLPMGPFNGSSIVDPQFAVLEQHRIPATAAAISLKVLAEFAIDAWLFTTDHWFVDRLDGD 120 Query: 121 YTAHEQHTIKHDPTIVSDFTPYLDQACKIVGASSDAALLRRGEVEMQQMVGRDATAVRSQ 180 Y AHEQ TI+ DPT V DF+PYLDQACKIVG+++DAALL R E MQQ +G A AVRSQ Sbjct: 121 YVAHEQGTIQADPTAVDDFSPYLDQACKIVGSTTDAALLARCEQAMQQALGTQALAVRSQ 180 Query: 181 TYYLDVTPPGHDKGTFVEGIAKRLGVPLENVATIGDMQNDLPMFARSGVSFAMGNASDDV 240 +YYLD+TPPG DKG+FV +A+RLG+ + +ATIGDMQNDL MF SG+ AMGNA+ DV Sbjct: 181 SYYLDITPPGQDKGSFVRAMARRLGITTDAIATIGDMQNDLAMFKTSGLPIAMGNATPDV 240 Query: 241 KARATHVTETNEQDGFAHAMDTVLQ 265 + +A HVT +NE DGFA A++ +L+ Sbjct: 241 QRQARHVTASNEDDGFAAAVEFILK 265 >ref|YP_782622.1| Cof-like hydrolase [Rhodopseudomonas palustris BisA53] gb|ABJ07642.1| Cof-like hydrolase [Rhodopseudomonas palustris BisA53] Length = 269 Score = 335 bits (858), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 163/264 (61%), Positives = 195/264 (73%) Query: 1 MTRIALVVSDVDGTLLTKDKTLTDGARAAVRRLHEAGIGFTIVSSRPTIGMGFLIAPLAI 60 MT IALV+SDVDGTL+T DK LTD ARAAV+RL +A IGFTI SSRP +G+ LI PLA+ Sbjct: 1 MTGIALVISDVDGTLVTGDKRLTDAARAAVKRLRDAKIGFTITSSRPPVGLKMLIEPLAL 60 Query: 61 TQPIGAFNGSSIVDPQLKPLEQHLIPAAVAKRCIDMLHERGVDIWLFTNDRWLTRNPDGE 120 PIGAFNGSSIVDP+L LE HLIP + +D+L E VD W+FT D+WL N DG Sbjct: 61 DLPIGAFNGSSIVDPKLNELESHLIPVPAVRTSLDVLREFAVDAWVFTQDQWLIHNSDGV 120 Query: 121 YTAHEQHTIKHDPTIVSDFTPYLDQACKIVGASSDAALLRRGEVEMQQMVGRDATAVRSQ 180 Y AHEQ TI+ PT+V F+PY D A KIVGAS D ALL R E +Q+ +G A+AVRSQ Sbjct: 121 YVAHEQQTIQFAPTVVEHFSPYFDGASKIVGASDDFALLERCERALQEALGAQASAVRSQ 180 Query: 181 TYYLDVTPPGHDKGTFVEGIAKRLGVPLENVATIGDMQNDLPMFARSGVSFAMGNASDDV 240 YYLDVTPPG DKG+FV +A+RLG+ + +A+IGDM NDLPM SG+S AMGNA D+V Sbjct: 181 RYYLDVTPPGCDKGSFVAAMAQRLGIATDAIASIGDMANDLPMLRASGLSVAMGNAPDEV 240 Query: 241 KARATHVTETNEQDGFAHAMDTVL 264 K A HVT +NE DGFA A+D +L Sbjct: 241 KKEARHVTASNEDDGFAKAVDLIL 264