BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0139.0012.p (504 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_766771.1| acid-CoA ligase [Bradyrhizobium japonicum USDA ... 828 0.0 ref|YP_001237268.1| putative acyl-CoA ligase [Bradyrhizobium sp.... 824 0.0 ref|YP_001208353.1| putative acyl-CoA ligase [Bradyrhizobium sp.... 821 0.0 ref|YP_001412313.1| AMP-dependent synthetase and ligase [Parviba... 478 e-132 ref|YP_001262100.1| AMP-dependent synthetase and ligase [Sphingo... 467 e-129 >ref|NP_766771.1| acid-CoA ligase [Bradyrhizobium japonicum USDA 110] dbj|BAC45396.1| bll0131 [Bradyrhizobium japonicum USDA 110] Length = 505 Score = 828 bits (2138), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/500 (82%), Positives = 441/500 (88%) Query: 1 MLIPLADVPRWYAERKPADAIAISHGADALTWLELERRANARARVFAAKGVKPGDFVAIG 60 ML+PL+DVPRWYAERKP IA+ HG D LTW ELER AN RAR FAAKGVKPGDFVAIG Sbjct: 1 MLLPLSDVPRWYAERKPQGTIAVRHGQDTLTWDELERGANRRARAFAAKGVKPGDFVAIG 60 Query: 61 LPNSNAFFETTFAVWKCGATPTSLSWRLPRGEAAAVLEILKPSLVVGGEADWNAPNSLPV 120 LPN NAFFET+FA+WKCGATPTSLSWRLPRGEAAAVL+ILKP+LVVGGEADWNAPN LP Sbjct: 61 LPNGNAFFETSFAIWKCGATPTSLSWRLPRGEAAAVLDILKPALVVGGEADWNAPNRLPA 120 Query: 121 NFVPDGFSEEPLDAPVARYWKAMTSGGSTGRPKVILDHNPAVIETTAEATLGIARDTSLL 180 +FVP+GFS+EPL PVARYWKAMTSGGSTGRPKVILDH+PAV +T A L I SLL Sbjct: 121 DFVPEGFSDEPLTPPVARYWKAMTSGGSTGRPKVILDHHPAVTDTVAAPALNIPFGVSLL 180 Query: 181 NPGPLYHNAPFILSHFALFGGGRVTGMVKFDAEETLRLIERERVQWVNFVPTMMHRIWAL 240 NPGPLYHNAPFI+SH ALF GG++TG+VKFDAEETLRLIERERVQWVNFVPTMMHRIWAL Sbjct: 181 NPGPLYHNAPFIVSHTALFAGGQLTGLVKFDAEETLRLIERERVQWVNFVPTMMHRIWAL 240 Query: 241 PEEVRSRYDVSSLKIVFHMAAPMPPWLKEKWIEWLGPERIWELYGGTERQGACVISGVEW 300 PE VR+ YDVSSL+ VFHMAAPMPPWLKE WI WLGPER+WELYGGTERQG+C+ISG EW Sbjct: 241 PENVRNAYDVSSLQTVFHMAAPMPPWLKENWIAWLGPERVWELYGGTERQGSCIISGTEW 300 Query: 301 MAHKGSVGKIGETAKLRIIGEDGNDVAPGETGEIYFLPNDGAGSTYHYLGATPKRRPDGW 360 + HKGSVGKIGE A+L IIGEDGNDVAPGETGEIYFL NDG +TYHYLGA PKRR DGW Sbjct: 301 LTHKGSVGKIGEMARLCIIGEDGNDVAPGETGEIYFLNNDGKDATYHYLGAEPKRRADGW 360 Query: 361 ESLGDIGRLDEEGYLYLGDRLADMVLRGGANIYPAEVEAAVSEHPEVRSCVVVGLPDPEF 420 ESLGDIGRLD EGYLYLGDRLADMVLRGGANIYPAEVEAAVS P VRSCVVVGLPDPE Sbjct: 361 ESLGDIGRLDAEGYLYLGDRLADMVLRGGANIYPAEVEAAVSACPVVRSCVVVGLPDPEL 420 Query: 421 GQRVHAILELADSADAQAIADGMGDFLKDRLSRYKHPESFERVGTAPRDDSGKVRRTMLR 480 GQRVHAI+E AD Q IADGM +FLKDRLSRYKHPESFE V PRDDSGKVRRT+LR Sbjct: 421 GQRVHAIIEPELDADGQVIADGMAEFLKDRLSRYKHPESFEIVSAPPRDDSGKVRRTLLR 480 Query: 481 DERAAWIKDNRAFRIMPARA 500 DERAAW+K+ RAFRI PA+A Sbjct: 481 DERAAWMKEGRAFRIWPAKA 500 >ref|YP_001237268.1| putative acyl-CoA ligase [Bradyrhizobium sp. BTAi1] gb|ABQ33362.1| putative acyl-CoA ligase [Bradyrhizobium sp. BTAi1] Length = 504 Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/500 (80%), Positives = 444/500 (88%) Query: 1 MLIPLADVPRWYAERKPADAIAISHGADALTWLELERRANARARVFAAKGVKPGDFVAIG 60 MLIP+ADVPRWYAERKP D+IA+ HG DALTW +LERRANARAR FAAKGVKPGDFVAIG Sbjct: 1 MLIPMADVPRWYAERKPKDSIAVQHGTDALTWDQLERRANARARAFAAKGVKPGDFVAIG 60 Query: 61 LPNSNAFFETTFAVWKCGATPTSLSWRLPRGEAAAVLEILKPSLVVGGEADWNAPNSLPV 120 LPN NA FET+FAVWKCGATPTSLSWRLPRGEAAAVLEIL+PSLVVGGEADWNAPN+LP Sbjct: 61 LPNGNALFETSFAVWKCGATPTSLSWRLPRGEAAAVLEILQPSLVVGGEADWNAPNALPA 120 Query: 121 NFVPDGFSEEPLDAPVARYWKAMTSGGSTGRPKVILDHNPAVIETTAEATLGIARDTSLL 180 +F P+GFS+EPL APV+RYWKAMTSGGSTGRPKVILDH PAV +T AE LGI + SLL Sbjct: 121 DFTPEGFSDEPLSAPVSRYWKAMTSGGSTGRPKVILDHQPAVTDTAAEPPLGIPKGASLL 180 Query: 181 NPGPLYHNAPFILSHFALFGGGRVTGMVKFDAEETLRLIERERVQWVNFVPTMMHRIWAL 240 NPGPLYHNAPFI+SH+ALF GG++TGMVKFDAEETLRLI+ +R+QWVNFVPTMMHRIWAL Sbjct: 181 NPGPLYHNAPFIVSHYALFAGGKLTGMVKFDAEETLRLIQAQRIQWVNFVPTMMHRIWAL 240 Query: 241 PEEVRSRYDVSSLKIVFHMAAPMPPWLKEKWIEWLGPERIWELYGGTERQGACVISGVEW 300 PE VR+ YDVSSLK+VFHMAAPMPPWLKE+WI WLGPER++ELYGGTERQG +ISG EW Sbjct: 241 PEAVRNSYDVSSLKMVFHMAAPMPPWLKEQWIAWLGPERVYELYGGTERQGRTIISGTEW 300 Query: 301 MAHKGSVGKIGETAKLRIIGEDGNDVAPGETGEIYFLPNDGAGSTYHYLGATPKRRPDGW 360 + HKGSVGKI ET KLRI+G DGNDV PGE+GEIYFLP DG GSTYHYLGA PKRR DGW Sbjct: 301 LQHKGSVGKIDETCKLRILGPDGNDVPPGESGEIYFLPADGPGSTYHYLGAEPKRRADGW 360 Query: 361 ESLGDIGRLDEEGYLYLGDRLADMVLRGGANIYPAEVEAAVSEHPEVRSCVVVGLPDPEF 420 ESLGDIGRLD +GYLYLGDRLADM+LRGGANIYPAEVEAA+ HP++RSCVVVGLPDPE Sbjct: 361 ESLGDIGRLDADGYLYLGDRLADMILRGGANIYPAEVEAALMAHPDIRSCVVVGLPDPEL 420 Query: 421 GQRVHAILELADSADAQAIADGMGDFLKDRLSRYKHPESFERVGTAPRDDSGKVRRTMLR 480 GQRVHAI+E+ + D +AI GM FL DRLSRYKHPES+E V RDDSGKVRRT+LR Sbjct: 421 GQRVHAIVEIDRAKDTEAIVAGMSTFLADRLSRYKHPESYELVDVMLRDDSGKVRRTLLR 480 Query: 481 DERAAWIKDNRAFRIMPARA 500 DERA W+K+ R FRIMPARA Sbjct: 481 DERATWLKEGRQFRIMPARA 500 >ref|YP_001208353.1| putative acyl-CoA ligase [Bradyrhizobium sp. ORS 278] emb|CAL80138.1| putative acyl-CoA ligase [Bradyrhizobium sp. ORS 278] Length = 505 Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/500 (80%), Positives = 443/500 (88%) Query: 1 MLIPLADVPRWYAERKPADAIAISHGADALTWLELERRANARARVFAAKGVKPGDFVAIG 60 MLIPLADVPRWYAERKP D+IAI HG DALTW +LERRANARAR FAAKGVKPGDFVAIG Sbjct: 1 MLIPLADVPRWYAERKPKDSIAIQHGTDALTWEQLERRANARARAFAAKGVKPGDFVAIG 60 Query: 61 LPNSNAFFETTFAVWKCGATPTSLSWRLPRGEAAAVLEILKPSLVVGGEADWNAPNSLPV 120 LPN N FET+FAVWKCGATPTSLSWRLPRGEAAAVLEILKPSLVVGGEADWNAPN+LP Sbjct: 61 LPNGNELFETSFAVWKCGATPTSLSWRLPRGEAAAVLEILKPSLVVGGEADWNAPNALPA 120 Query: 121 NFVPDGFSEEPLDAPVARYWKAMTSGGSTGRPKVILDHNPAVIETTAEATLGIARDTSLL 180 F P+GFS+EPL PV+RYWKAMTSGGSTGRPKVILDH PAV +T AE LGI + +LL Sbjct: 121 GFTPEGFSDEPLTGPVSRYWKAMTSGGSTGRPKVILDHAPAVTDTAAEPPLGIPKGAALL 180 Query: 181 NPGPLYHNAPFILSHFALFGGGRVTGMVKFDAEETLRLIERERVQWVNFVPTMMHRIWAL 240 NPGPLYHNAPFI+SH+ALF GG +TGMVKFDAEETLRLI+ +R+QWVNFVPTMMHRIWAL Sbjct: 181 NPGPLYHNAPFIVSHYALFAGGTLTGMVKFDAEETLRLIQAQRIQWVNFVPTMMHRIWAL 240 Query: 241 PEEVRSRYDVSSLKIVFHMAAPMPPWLKEKWIEWLGPERIWELYGGTERQGACVISGVEW 300 PE VR+ YD+SSLK+VFHMAAPMPPWLK KWIEWLGPER++ELYGGTERQG +ISG EW Sbjct: 241 PEAVRNSYDLSSLKMVFHMAAPMPPWLKGKWIEWLGPERVYELYGGTERQGRTIISGTEW 300 Query: 301 MAHKGSVGKIGETAKLRIIGEDGNDVAPGETGEIYFLPNDGAGSTYHYLGATPKRRPDGW 360 + HKGSVGKI + KLRI+G DGNDVAPGE+GEIYFLP DG GSTYHYLGA PKRR DGW Sbjct: 301 LQHKGSVGKIDDACKLRILGPDGNDVAPGESGEIYFLPADGPGSTYHYLGAEPKRRADGW 360 Query: 361 ESLGDIGRLDEEGYLYLGDRLADMVLRGGANIYPAEVEAAVSEHPEVRSCVVVGLPDPEF 420 ESLGDIGRLD +GYLYLGDRLADMVLRGGANIYPAEVEAA+ HP++RSCVVVGLPDPE Sbjct: 361 ESLGDIGRLDADGYLYLGDRLADMVLRGGANIYPAEVEAALMAHPDIRSCVVVGLPDPEL 420 Query: 421 GQRVHAILELADSADAQAIADGMGDFLKDRLSRYKHPESFERVGTAPRDDSGKVRRTMLR 480 GQRVHAI+E+ + DAQAI DGM FL DRLSRYKHPES+E V T RDDSGKVRRT+LR Sbjct: 421 GQRVHAIVEIDRAKDAQAIVDGMSAFLADRLSRYKHPESYELVDTMLRDDSGKVRRTLLR 480 Query: 481 DERAAWIKDNRAFRIMPARA 500 DERA W+K+ R FR++PARA Sbjct: 481 DERAMWLKEGRDFRLLPARA 500 >ref|YP_001412313.1| AMP-dependent synthetase and ligase [Parvibaculum lavamentivorans DS-1] gb|ABS62656.1| AMP-dependent synthetase and ligase [Parvibaculum lavamentivorans DS-1] Length = 495 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 242/485 (49%), Positives = 327/485 (67%), Gaps = 5/485 (1%) Query: 3 IPLADVPRWYAERKPADAIAISHGADALTWLELERRANARARVFAAKGVKPGDFVAIGLP 62 +PL D+ ++E+ PA A+++ ++ EL+ RAN RAR GV GD V + +P Sbjct: 11 VPLGDLLARHSEKDPARP-AVTYNEMTTSYAELDARANRRARQLETMGVCEGDVVTLAVP 69 Query: 63 NSNAFFETTFAVWKCGATPTSLSWRLPRGEAAAVLEILKPSLVVGGE-ADWNAPNSLPVN 121 NS F+E FAVWK GATP +S RLP E A++EI P L++G E A + N L Sbjct: 70 NSLEFYEIVFAVWKLGATPNIVSSRLPVAELRAIVEIAGPRLIIGEESARVDGWNFLATG 129 Query: 122 FVP-DGFSEEPLDAPVARYWKAMTSGGSTGRPKVILDHNPAVIETTAEATLGIARDTSLL 180 P S +PL VA WK TSGGSTGRPK+I+D + + ++ +A +T +L Sbjct: 130 TKPGTDLSPDPLPTKVASRWKMHTSGGSTGRPKLIVDKQSGLYDPGKARSIQLAGET-ML 188 Query: 181 NPGPLYHNAPFILSHFALFGGGRVTGMVKFDAEETLRLIERERVQWVNFVPTMMHRIWAL 240 NPGPLYHNAPF+ S +LF G V M +FD L LIER ++ V+FVPTMM+RIW L Sbjct: 189 NPGPLYHNAPFVGSFQSLFAGNHVVEMGRFDPLRALELIERHKINVVSFVPTMMNRIWRL 248 Query: 241 PEEVRSRYDVSSLKIVFHMAAPMPPWLKEKWIEWLGPERIWELYGGTERQGACVISGVEW 300 P E R +D+SSL++V H+A+ P WLK+ WI+WLGP+RI+E+YGG+E G I+G EW Sbjct: 249 PAEQRGSFDLSSLRLVIHLASICPAWLKQAWIDWLGPDRIFEIYGGSELFGGTAITGREW 308 Query: 301 MAHKGSVGKIGETAKLRIIGEDGNDVAPGETGEIYFLPNDGAGSTYHYLGATPKRRPDGW 360 ++HKGSVGK+ A++RI+ E G + APGE GEIYFLP+ G STY Y+GA K DGW Sbjct: 309 LSHKGSVGKVRPGAQMRILDEQGKECAPGEIGEIYFLPDTGPNSTYEYIGAQAKTM-DGW 367 Query: 361 ESLGDIGRLDEEGYLYLGDRLADMVLRGGANIYPAEVEAAVSEHPEVRSCVVVGLPDPEF 420 ++ GD+G +DEEGYLY+ DR DM++ GGANI+PAEVEAA+ +HP V S +V+GLPD + Sbjct: 368 QTYGDLGHVDEEGYLYIADRRTDMIVSGGANIFPAEVEAALDQHPNVLSSIVIGLPDADL 427 Query: 421 GQRVHAILELADSADAQAIADGMGDFLKDRLSRYKHPESFERVGTAPRDDSGKVRRTMLR 480 GQRVHAI+++ ++AD ++ AD M +FL D+L RYK P +FE RDD+GK RR+ LR Sbjct: 428 GQRVHAIVQMGENADERSDADVMREFLSDKLVRYKIPRTFEFTSENLRDDAGKARRSQLR 487 Query: 481 DERAA 485 +ER A Sbjct: 488 EERIA 492 >ref|YP_001262100.1| AMP-dependent synthetase and ligase [Sphingomonas wittichii RW1] gb|ABQ67962.1| AMP-dependent synthetase and ligase [Sphingomonas wittichii RW1] Length = 484 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 250/496 (50%), Positives = 311/496 (62%), Gaps = 29/496 (5%) Query: 1 MLIPLADVPRWYAERKPADAIAISHGADALTWLELERRANARARVFAAKGVKPGDFVAIG 60 M I + + ++A P A+ I H E + RAN RAR KGV GDFV + Sbjct: 1 MQISVGALSTYHARNDPNRALLI-HNDGICRRAEFDARANKRARALQQKGVGQGDFVTMA 59 Query: 61 LPNSNAFFETTFAVWKCGATPTSLSWRLPRGEAAAVLEILKPSLVVGGEADWNAPNSLPV 120 LPN F+ET FA+WK GA P +S LPR E A++ +++P LV+ P Sbjct: 60 LPNGLEFYETIFAIWKLGAVPCPVSAALPRAELEAIIGLVQPRLVIA-----------PP 108 Query: 121 NFVPDG-------------FSEEPLDAPVARYWKAMTSGGSTGRPKVILDHNPAVIETTA 167 N VP G S PL V+ + +A+TSGGSTGRPKVI+DH P + +T A Sbjct: 109 NLVPSGHPSMLAGAPVDEMLSSAPLPDVVSPHLRALTSGGSTGRPKVIVDHLPGIWDTEA 168 Query: 168 EATLGIARDTSLLNPGPLYHNAPFILSHFALFGGGRVTGMVKFDAEETLRLIERERVQWV 227 E A D LLNPGPLYHN+P ++ ALF G V M KFDA L LIER RV +V Sbjct: 169 ELLRQRADDV-LLNPGPLYHNSPLSMTCCALFIGAVVVEMGKFDALRALELIERHRVSFV 227 Query: 228 NFVPTMMHRIWALPEEVRSRYDVSSLKIVFHMAAPMPPWLKEKWIEWLGPERIWELYGGT 287 FVPTMMHRIW LPE R R+DVSSL+ V+HMA+ P WLKE WI+WLG +RIWE+YGG+ Sbjct: 228 TFVPTMMHRIWRLPE--RERFDVSSLRTVYHMASVCPTWLKEAWIDWLGADRIWEMYGGS 285 Query: 288 ERQGACVISGVEWMAHKGSVGKIGETAKLRIIGEDGNDVAPGETGEIYFLPNDGAGSTYH 347 ERQG ISG EW+ HKGSVG+ KLR++ EDG PG GEIYFL G G+TYH Sbjct: 286 ERQGGTEISGHEWLLHKGSVGRPLANCKLRVLDEDGEICQPGVVGEIYFLNEGGRGATYH 345 Query: 348 YLGATPKRRPDGWESLGDIGRLDEEGYLYLGDRLADMVLRGGANIYPAEVEAAVSEHPEV 407 Y+GA K + WE+LGD+G LDEEGYLY+ DR DM++ GGAN+YPAEVEAA+ P V Sbjct: 346 YIGAEAKAHGE-WETLGDMGHLDEEGYLYIADRRTDMIVSGGANVYPAEVEAALDMSPHV 404 Query: 408 RSCVVVGLPDPEFGQRVHAILELADSADAQAIADGMGDFLKDRLSRYKHPESFERVGTAP 467 S +V+GLPD + G RVHA++EL+ A A+ + D L L+RYK P SFE V A Sbjct: 405 ASSIVIGLPDEDLGHRVHALIELSAEARGVVAAEDLRDHLAAHLTRYKIPRSFEFVDHAL 464 Query: 468 RDDSGKVRRTMLRDER 483 RDD+GK RR+ LR+ R Sbjct: 465 RDDAGKARRSALREAR 480