BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0139.0011.p (323 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001208358.1| putative serine protease [Bradyrhizobium sp.... 543 e-152 ref|NP_767991.1| serine protease [Bradyrhizobium japonicum USDA ... 541 e-152 ref|YP_001237263.1| putative serine protease [Bradyrhizobium sp.... 528 e-148 ref|YP_484635.1| PDZ/DHR/GLGF [Rhodopseudomonas palustris HaA2] ... 486 e-135 ref|YP_568256.1| hypothetical protein RPD_1117 [Rhodopseudomonas... 484 e-134 >ref|YP_001208358.1| putative serine protease [Bradyrhizobium sp. ORS 278] emb|CAL80143.1| putative serine protease [Bradyrhizobium sp. ORS 278] Length = 323 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 262/323 (81%), Positives = 291/323 (90%) Query: 1 MPSATEWKVPAAFQPRPEDYRYDLDRALMSVVGLHSIIPPDAFSAETLGTERAGNGVLID 60 MPS TEWKVP AFQPR EDY+YDLD AL S+VGLHSIIP DAFSAETLGTERAGN V+ID Sbjct: 1 MPSLTEWKVPFAFQPRAEDYQYDLDHALSSIVGLHSIIPSDAFSAETLGTERAGNAVVID 60 Query: 61 DGLVLTIGYLITEAATVWLHLGDGRAVEGHALGFDFESGFGLVQALGRLDLEPLRIGSSA 120 DGLVLTIGYLITEA +VWLHL DGR VEGH LGFDF +GFGLVQALGRLDL L +GSSA Sbjct: 61 DGLVLTIGYLITEAESVWLHLNDGRVVEGHVLGFDFATGFGLVQALGRLDLPALPLGSSA 120 Query: 121 ATQVGDNVVLGGAGGRTRSVASQIAAKQEFAGYWEYLLDEAIFTSPSHPNWGGTGLINNA 180 AT++GD VVLGGAGGRTRSVASQI AKQEFAGYWEYLLDEAIFT P+HPNWGGTGL++ Sbjct: 121 ATKIGDQVVLGGAGGRTRSVASQIIAKQEFAGYWEYLLDEAIFTHPAHPNWGGTGLLSPK 180 Query: 181 GELIGIGSLQLERERSGHAEHVNMIVPIDLLNPVLDDLRKYGRVDKPARPWLGMYTTEID 240 GELIGIGSLQLERER AEHVNMIVPIDLL P++DDLR++GRV+KPARPWLGM+ TE+D Sbjct: 181 GELIGIGSLQLERERDSKAEHVNMIVPIDLLKPIIDDLRRFGRVNKPARPWLGMFATEVD 240 Query: 241 NRLVVVGVASKGPAARAELKTGDVILAVDGDKVTSQAGFYRKLWSLGAAGVDVPLTIYHE 300 +R+VV+GVAS GPAARAELK+GDVIL ++GDKVTSQ+ FYRKLW+LG AGVDVPLT++HE Sbjct: 241 DRVVVIGVASNGPAARAELKSGDVILGINGDKVTSQSEFYRKLWALGDAGVDVPLTVHHE 300 Query: 301 GVTFDVTLTSIDRMKLLKAPRLH 323 GVTFDVT+ S DR KLLKAPRLH Sbjct: 301 GVTFDVTVASTDRAKLLKAPRLH 323 >ref|NP_767991.1| serine protease [Bradyrhizobium japonicum USDA 110] dbj|BAC46616.1| bll1351 [Bradyrhizobium japonicum USDA 110] Length = 323 Score = 541 bits (1395), Expect = e-152, Method: Compositional matrix adjust. Identities = 258/323 (79%), Positives = 294/323 (91%) Query: 1 MPSATEWKVPAAFQPRPEDYRYDLDRALMSVVGLHSIIPPDAFSAETLGTERAGNGVLID 60 MP+ TEW+VP A QPR +Y +DLDRAL SVVGLH+IIPPDAFSAETLGTERAGNGV+ID Sbjct: 1 MPALTEWRVPPANQPRASEYGFDLDRALASVVGLHAIIPPDAFSAETLGTERAGNGVVID 60 Query: 61 DGLVLTIGYLITEAATVWLHLGDGRAVEGHALGFDFESGFGLVQALGRLDLEPLRIGSSA 120 DGLVLTIGYLITEA +VWLHL DGR VEGHALGFD +GFGLVQALG LD+EPL +GSSA Sbjct: 61 DGLVLTIGYLITEAESVWLHLADGRVVEGHALGFDSVTGFGLVQALGELDVEPLPLGSSA 120 Query: 121 ATQVGDNVVLGGAGGRTRSVASQIAAKQEFAGYWEYLLDEAIFTSPSHPNWGGTGLINNA 180 T+VGD VV+GGAGGRTRSVASQI AKQEFAGYWEYLLDEA+FT P+HPNWGGTGL+N Sbjct: 121 ETRVGDRVVVGGAGGRTRSVASQIVAKQEFAGYWEYLLDEAVFTHPAHPNWGGTGLLNER 180 Query: 181 GELIGIGSLQLERERSGHAEHVNMIVPIDLLNPVLDDLRKYGRVDKPARPWLGMYTTEID 240 GELIGIGSLQLERER G AEHVNMIVPIDLL P+L+DLRK+GRV+KP+RPWLG+Y+TEID Sbjct: 181 GELIGIGSLQLERERDGKAEHVNMIVPIDLLKPILEDLRKFGRVNKPSRPWLGLYSTEID 240 Query: 241 NRLVVVGVASKGPAARAELKTGDVILAVDGDKVTSQAGFYRKLWSLGAAGVDVPLTIYHE 300 NR+VV+G+++ GPAARAELKTGDVILAVDG+K+ SQ FY+K+W+LGAAGVDVPLT++HE Sbjct: 241 NRVVVIGISANGPAARAELKTGDVILAVDGEKIISQTAFYKKMWALGAAGVDVPLTVHHE 300 Query: 301 GVTFDVTLTSIDRMKLLKAPRLH 323 GVTFDVT+TS DR KLLKAP+LH Sbjct: 301 GVTFDVTVTSTDRFKLLKAPKLH 323 >ref|YP_001237263.1| putative serine protease [Bradyrhizobium sp. BTAi1] gb|ABQ33357.1| putative serine protease [Bradyrhizobium sp. BTAi1] Length = 323 Score = 528 bits (1359), Expect = e-148, Method: Compositional matrix adjust. Identities = 251/323 (77%), Positives = 287/323 (88%) Query: 1 MPSATEWKVPAAFQPRPEDYRYDLDRALMSVVGLHSIIPPDAFSAETLGTERAGNGVLID 60 MPS TEWKVP AFQPR EDY+YDLD AL S+VGLH+IIP DAFSAETLGTERAGN V+ID Sbjct: 1 MPSLTEWKVPFAFQPRAEDYQYDLDHALSSIVGLHAIIPADAFSAETLGTERAGNAVVID 60 Query: 61 DGLVLTIGYLITEAATVWLHLGDGRAVEGHALGFDFESGFGLVQALGRLDLEPLRIGSSA 120 +GLVLTIGYLITEA +VWLHL DGR VEGH LGFDF +GFGLVQALG+LDL L +GSS Sbjct: 61 EGLVLTIGYLITEAESVWLHLNDGRVVEGHVLGFDFATGFGLVQALGQLDLPALPLGSSE 120 Query: 121 ATQVGDNVVLGGAGGRTRSVASQIAAKQEFAGYWEYLLDEAIFTSPSHPNWGGTGLINNA 180 + ++GD VVLGGAGGRTRSVASQI AKQEFAGYWEYLLDEAIFT P+HPNWGGT L++ Sbjct: 121 SAKIGDQVVLGGAGGRTRSVASQIIAKQEFAGYWEYLLDEAIFTHPAHPNWGGTALLSAK 180 Query: 181 GELIGIGSLQLERERSGHAEHVNMIVPIDLLNPVLDDLRKYGRVDKPARPWLGMYTTEID 240 GELIGIGSLQLERER +EHVNMIVPIDLL P++DDL+++GRV+KPARPWLG+Y TE+D Sbjct: 181 GELIGIGSLQLERERDNKSEHVNMIVPIDLLKPIIDDLKRFGRVNKPARPWLGLYATEVD 240 Query: 241 NRLVVVGVASKGPAARAELKTGDVILAVDGDKVTSQAGFYRKLWSLGAAGVDVPLTIYHE 300 +R+VV+GV++ GPAARAELK GDVIL ++GDKVTSQ+ FYRKLW+LG AGVDVPLT++HE Sbjct: 241 DRVVVIGVSNNGPAARAELKAGDVILGINGDKVTSQSEFYRKLWALGDAGVDVPLTVHHE 300 Query: 301 GVTFDVTLTSIDRMKLLKAPRLH 323 GVTFDVT+ S DR KLLKAPRLH Sbjct: 301 GVTFDVTVASTDRAKLLKAPRLH 323 >ref|YP_484635.1| PDZ/DHR/GLGF [Rhodopseudomonas palustris HaA2] gb|ABD05724.1| PDZ/DHR/GLGF [Rhodopseudomonas palustris HaA2] Length = 321 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 236/323 (73%), Positives = 275/323 (85%), Gaps = 2/323 (0%) Query: 1 MPSATEWKVPAAFQPRPEDYRYDLDRALMSVVGLHSIIPPDAFSAETLGTERAGNGVLID 60 MPS EW VPAA +PR D+ +DLDR L +V+G+H+IIPPDAF+A TLGTERAGN VLID Sbjct: 1 MPSLPEWNVPAAIRPRAADFPFDLDRTLSAVLGVHAIIPPDAFTANTLGTERAGNAVLID 60 Query: 61 DGLVLTIGYLITEAATVWLHLGDGRAVEGHALGFDFESGFGLVQALGRLDLEPLRIGSSA 120 DGL+LTIGYLITEA TVWLHLGDGRAVEGHALG D +SGFGLVQALG +DL PLR+G S+ Sbjct: 61 DGLLLTIGYLITEAETVWLHLGDGRAVEGHALGIDSDSGFGLVQALGAIDLPPLRLGHSS 120 Query: 121 ATQVGDNVVLGGAGGRTRSVASQIAAKQEFAGYWEYLLDEAIFTSPSHPNWGGTGLINNA 180 A + GD V++GG GGR RSVA +IAA+Q FAGYWEYL+D+AIFT PSHPNWGG GLI+ Sbjct: 121 AAKTGDRVIVGGVGGRIRSVAGRIAARQPFAGYWEYLIDDAIFTEPSHPNWGGAGLISAT 180 Query: 181 GELIGIGSLQLERERSGHAEHVNMIVPIDLLNPVLDDLRKYGRVDKPARPWLGMYTTEID 240 GELIGIGSLQ+ ERSG EH NM+VPIDLL PVL DLRK+GRVD+P RPWLG+Y+TEI+ Sbjct: 181 GELIGIGSLQI--ERSGSDEHYNMMVPIDLLKPVLGDLRKFGRVDRPPRPWLGLYSTEIE 238 Query: 241 NRLVVVGVASKGPAARAELKTGDVILAVDGDKVTSQAGFYRKLWSLGAAGVDVPLTIYHE 300 +R+VVVG+A KGPAARAELK+GDVILAV GDKVTS+A FYRK+W+LGAAGV+VPLT++ Sbjct: 239 DRIVVVGIAPKGPAARAELKSGDVILAVAGDKVTSEAEFYRKVWALGAAGVEVPLTLFSG 298 Query: 301 GVTFDVTLTSIDRMKLLKAPRLH 323 G TFDV L S DR K LK PR+H Sbjct: 299 GATFDVVLHSADRAKFLKGPRMH 321 >ref|YP_568256.1| hypothetical protein RPD_1117 [Rhodopseudomonas palustris BisB5] gb|ABE38355.1| PDZ/DHR/GLGF [Rhodopseudomonas palustris BisB5] Length = 321 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 238/323 (73%), Positives = 271/323 (83%), Gaps = 2/323 (0%) Query: 1 MPSATEWKVPAAFQPRPEDYRYDLDRALMSVVGLHSIIPPDAFSAETLGTERAGNGVLID 60 MPS EW VPAA +PR D+ +DL+RAL SV+GLHSIIP DAF+A TLGTERAGN VLID Sbjct: 1 MPSLPEWNVPAAIRPRAADFPFDLERALSSVIGLHSIIPSDAFTANTLGTERAGNCVLID 60 Query: 61 DGLVLTIGYLITEAATVWLHLGDGRAVEGHALGFDFESGFGLVQALGRLDLEPLRIGSSA 120 DGL+LTIGYLITEA TVWLHLGDGR VEGHALGFD ESGFGLVQALG +DL PL +G+S Sbjct: 61 DGLLLTIGYLITEAETVWLHLGDGRVVEGHALGFDAESGFGLVQALGPIDLPPLALGNSG 120 Query: 121 ATQVGDNVVLGGAGGRTRSVASQIAAKQEFAGYWEYLLDEAIFTSPSHPNWGGTGLINNA 180 A + GD VV+ GAGGRTRSVA +IA +QEFAGYWEYLLD+AIFT PSHPNWGG GLI+ Sbjct: 121 AAKAGDRVVIAGAGGRTRSVAGRIATRQEFAGYWEYLLDDAIFTEPSHPNWGGAGLISAT 180 Query: 181 GELIGIGSLQLERERSGHAEHVNMIVPIDLLNPVLDDLRKYGRVDKPARPWLGMYTTEID 240 GELIGIGSLQ+ ERSG H NMIVPIDLL P L DLRK+GRVDKP RPWLG+Y+TEI+ Sbjct: 181 GELIGIGSLQI--ERSGTDAHYNMIVPIDLLKPALSDLRKFGRVDKPPRPWLGLYSTEIE 238 Query: 241 NRLVVVGVASKGPAARAELKTGDVILAVDGDKVTSQAGFYRKLWSLGAAGVDVPLTIYHE 300 ++VVVG+A KGPAARAELK+GDVILAV G+KV+S+ FYRK+W+LG AGV+VPLT++ Sbjct: 239 GKIVVVGIAPKGPAARAELKSGDVILAVAGEKVSSEGEFYRKIWALGTAGVEVPLTLFSG 298 Query: 301 GVTFDVTLTSIDRMKLLKAPRLH 323 G TFDV L S DR K LKAPRLH Sbjct: 299 GATFDVVLHSSDRAKFLKAPRLH 321