BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0139.0007.p (295 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002545425.1| transcriptional regulator protein [Agrobacte... 424 e-116 ref|YP_001602913.1| LysR family transcriptional regulator [Gluco... 412 e-113 ref|YP_002977144.1| LysR family transcriptional regulator [Rhizo... 411 e-113 ref|YP_769359.1| LysR family transcriptional regulator [Rhizobiu... 410 e-112 gb|EGE58034.1| putative transcriptional regulator protein, LysR ... 407 e-111 >ref|YP_002545425.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gb|ACM27495.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 303 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 205/295 (69%), Positives = 242/295 (82%) Query: 1 MDRFDAMRVFTRVVERRSFSLAAEDLGLPRSTVTDAVKGLEARLGVRLLERTTRTVRATL 60 MDRFDAMRVF+RVVERRSF+LAAED GLPRSTVTDAVK LEARLGVRLL+RTTR V TL Sbjct: 1 MDRFDAMRVFSRVVERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTL 60 Query: 61 DGEAHYRRCLSLIADLEDAEGAFGGARPKGLLRLEVQGTLARHFLLPNLPGFLAEYPDIE 120 DGEA+Y+RCL +++D+EDAEGAF GA+PKGLLR++V GTLARHF+LPNLP FL YP+IE Sbjct: 61 DGEAYYQRCLRILSDIEDAEGAFAGAKPKGLLRVDVHGTLARHFVLPNLPSFLETYPEIE 120 Query: 121 INMSESDRWVDLIREGVDCVLRFGKLPDSDMIARQVTMLERLTCATPDYLARFGTPVDPF 180 + MSE DR+VDLIREG+DCVLR G DSDMIAR+V MLE +T A P Y+ RFG P P Sbjct: 121 LYMSEGDRFVDLIREGIDCVLRVGTPQDSDMIARRVAMLEEITLAAPAYIERFGMPTHPE 180 Query: 181 ALDGHRMIGIRSLTTGRLRPMEFVIDGALKQFPLPAPMSVTGPESYLASAKLGLGLVQVP 240 ALDGHRM+G RS TG L P+EF +DGA++ LPA +SV ESY ++AKLGLGL+QVP Sbjct: 181 ALDGHRMVGFRSSATGGLLPLEFTVDGAIRNITLPATVSVNAAESYFSAAKLGLGLIQVP 240 Query: 241 RFHAETDLANGTLVAVLQQCPPPSVPVNLLYPRNRQLSPRVRVFIDYVMRAFARS 295 R+HAE L +G LV VL+ PP PV++LYPRNRQLSPRVRVFID+++R FAR Sbjct: 241 RYHAEEALKSGELVHVLKDFPPTRTPVSMLYPRNRQLSPRVRVFIDWLVRVFARQ 295 >ref|YP_001602913.1| LysR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] emb|CAP56614.1| putative transcriptional regulator, LysR family [Gluconacetobacter diazotrophicus PAl 5] Length = 294 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 203/293 (69%), Positives = 240/293 (81%) Query: 1 MDRFDAMRVFTRVVERRSFSLAAEDLGLPRSTVTDAVKGLEARLGVRLLERTTRTVRATL 60 MDRFDAMRVFTRVVERRSF+LAA DLGLPRSTVTDAVK LEARLGVRLL+RTTR V TL Sbjct: 1 MDRFDAMRVFTRVVERRSFTLAASDLGLPRSTVTDAVKRLEARLGVRLLQRTTRHVSPTL 60 Query: 61 DGEAHYRRCLSLIADLEDAEGAFGGARPKGLLRLEVQGTLARHFLLPNLPGFLAEYPDIE 120 DG A++RRCL+LIADLEDAE AFGGARP+G+LR++V GTLARHF+LP LP F+A YPDIE Sbjct: 61 DGAAYHRRCLALIADLEDAEAAFGGARPRGMLRVDVHGTLARHFVLPRLPDFMAAYPDIE 120 Query: 121 INMSESDRWVDLIREGVDCVLRFGKLPDSDMIARQVTMLERLTCATPDYLARFGTPVDPF 180 + +SE DR VDLIREG+DCVLR G L DSDM+AR+V MLE +TCA P YLARFG P D Sbjct: 121 LTLSEGDRLVDLIREGIDCVLRVGDLQDSDMVARRVAMLEEVTCAAPSYLARFGMPGDVD 180 Query: 181 ALDGHRMIGIRSLTTGRLRPMEFVIDGALKQFPLPAPMSVTGPESYLASAKLGLGLVQVP 240 ALDGHRM+G RS TG L P+EF++ +L+ L +P++V G ES +A+A+LGLGLVQVP Sbjct: 181 ALDGHRMVGFRSSATGTLLPLEFMVGDSLRTITLLSPVAVNGAESLVAAARLGLGLVQVP 240 Query: 241 RFHAETDLANGTLVAVLQQCPPPSVPVNLLYPRNRQLSPRVRVFIDYVMRAFA 293 R+H DL GTLV VL PP PV+LLYPR+RQ++PRVRVFID++ + FA Sbjct: 241 RYHVVQDLGQGTLVVVLPDHPPSRTPVSLLYPRHRQVAPRVRVFIDWISQVFA 293 >ref|YP_002977144.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS57605.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 302 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 196/295 (66%), Positives = 242/295 (82%) Query: 1 MDRFDAMRVFTRVVERRSFSLAAEDLGLPRSTVTDAVKGLEARLGVRLLERTTRTVRATL 60 MDRFDAMRVF RVVERRSF+LAAED GLPRSTVTDAVKGLEARLGVRLL+RTTR V TL Sbjct: 1 MDRFDAMRVFCRVVERRSFTLAAEDTGLPRSTVTDAVKGLEARLGVRLLQRTTRHVSPTL 60 Query: 61 DGEAHYRRCLSLIADLEDAEGAFGGARPKGLLRLEVQGTLARHFLLPNLPGFLAEYPDIE 120 DGEA+Y+RCLS++AD+E AEGAF GA+PKGLLR++V GTLARHF+LP+LP FL YP+IE Sbjct: 61 DGEAYYQRCLSILADIEGAEGAFAGAKPKGLLRVDVHGTLARHFVLPSLPSFLETYPEIE 120 Query: 121 INMSESDRWVDLIREGVDCVLRFGKLPDSDMIARQVTMLERLTCATPDYLARFGTPVDPF 180 MSE DR VDL+REG+DCVLR G DSDM+AR+V ML+ +T A+PDY+A G P P Sbjct: 121 FYMSEGDRLVDLVREGIDCVLRVGTPGDSDMVARRVAMLDEVTLASPDYIATRGLPQHPH 180 Query: 181 ALDGHRMIGIRSLTTGRLRPMEFVIDGALKQFPLPAPMSVTGPESYLASAKLGLGLVQVP 240 L GHRM+G RS +TG L P+EF++DG ++ +PA ++V ESY+++A++GLG++Q+P Sbjct: 181 RLAGHRMVGFRSSSTGTLLPLEFIVDGTVRNVTIPATVAVNAAESYISAARMGLGMIQIP 240 Query: 241 RFHAETDLANGTLVAVLQQCPPPSVPVNLLYPRNRQLSPRVRVFIDYVMRAFARS 295 R+HAE DLA GTL+ VLQ P PV+LLYPRNRQLSPRVRVFID++++ FAR Sbjct: 241 RYHAEKDLAEGTLIHVLQDFPLTPTPVSLLYPRNRQLSPRVRVFIDWLVKVFARQ 295 >ref|YP_769359.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] emb|CAK09270.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 302 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 197/295 (66%), Positives = 240/295 (81%) Query: 1 MDRFDAMRVFTRVVERRSFSLAAEDLGLPRSTVTDAVKGLEARLGVRLLERTTRTVRATL 60 MDRFDAMRVF RVVERRSF+LAAED GLPRSTVTDAVK LEARLGVRLL+RTTR V TL Sbjct: 1 MDRFDAMRVFCRVVERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTL 60 Query: 61 DGEAHYRRCLSLIADLEDAEGAFGGARPKGLLRLEVQGTLARHFLLPNLPGFLAEYPDIE 120 DGEA+Y+RCLS++AD+E+AEGAF GA+PKG+LR++V GTLARHF+LP+LP FL YPDIE Sbjct: 61 DGEAYYQRCLSILADIEEAEGAFAGAKPKGMLRVDVHGTLARHFVLPSLPSFLETYPDIE 120 Query: 121 INMSESDRWVDLIREGVDCVLRFGKLPDSDMIARQVTMLERLTCATPDYLARFGTPVDPF 180 MSE DR VDL+REG+DCVLR G DSDM+AR+V ML+ +T A+P Y+AR G P P Sbjct: 121 FYMSEGDRLVDLVREGIDCVLRVGTPQDSDMVARRVAMLDEVTLASPAYIARHGKPEHPE 180 Query: 181 ALDGHRMIGIRSLTTGRLRPMEFVIDGALKQFPLPAPMSVTGPESYLASAKLGLGLVQVP 240 L GHRM+G RS TG L P+EF++DGA+ +PA ++V ESY+++A+LGLG++Q+P Sbjct: 181 RLAGHRMVGFRSSGTGSLLPLEFIVDGAVANIGIPATVAVNAAESYISAARLGLGMIQIP 240 Query: 241 RFHAETDLANGTLVAVLQQCPPPSVPVNLLYPRNRQLSPRVRVFIDYVMRAFARS 295 R+HAE DLA GTLV VL P PV+LLYPRNRQLSPRVRVFID++++ FAR Sbjct: 241 RYHAEKDLAEGTLVQVLPDFPLTQTPVSLLYPRNRQLSPRVRVFIDWLVKVFARQ 295 >gb|EGE58034.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 302 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 196/295 (66%), Positives = 241/295 (81%) Query: 1 MDRFDAMRVFTRVVERRSFSLAAEDLGLPRSTVTDAVKGLEARLGVRLLERTTRTVRATL 60 MDRFDAMRVF RVVERRSF+LAAED GLPRSTVTDAVK LEARLGVRLL+RTTR V TL Sbjct: 1 MDRFDAMRVFCRVVERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTL 60 Query: 61 DGEAHYRRCLSLIADLEDAEGAFGGARPKGLLRLEVQGTLARHFLLPNLPGFLAEYPDIE 120 DGEA+Y+RCLS++AD+EDAEGAF GARPKGLLR++V GTLARHF+LP+LP FL YP+IE Sbjct: 61 DGEAYYQRCLSILADIEDAEGAFAGARPKGLLRVDVHGTLARHFVLPSLPSFLQTYPEIE 120 Query: 121 INMSESDRWVDLIREGVDCVLRFGKLPDSDMIARQVTMLERLTCATPDYLARFGTPVDPF 180 MSE DR VDL+REG+DCV+R G DSDM+AR++ ML+ +T A+P Y+A G P P Sbjct: 121 FYMSEGDRLVDLVREGIDCVVRVGTPGDSDMVARRLAMLDEITLASPAYIAAHGLPQHPD 180 Query: 181 ALDGHRMIGIRSLTTGRLRPMEFVIDGALKQFPLPAPMSVTGPESYLASAKLGLGLVQVP 240 L GHRM+G RS +TG L P+EF++DGA++ LPA ++V ESY+++A++GLGL+Q+P Sbjct: 181 RLTGHRMVGFRSSSTGTLLPLEFIVDGAVRNITLPAAVAVNAAESYISAARMGLGLIQIP 240 Query: 241 RFHAETDLANGTLVAVLQQCPPPSVPVNLLYPRNRQLSPRVRVFIDYVMRAFARS 295 R+HAE DLA G LV VL+ P PV+LLYPRNRQLSPRVRVFID++++ FAR Sbjct: 241 RYHAENDLAEGRLVHVLENFPLTPTPVSLLYPRNRQLSPRVRVFIDWLVKVFARQ 295