BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0139.0005.p         (183 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_767989.1| hypothetical protein blr1349 [Bradyrhizobium ja...   273   6e-72
ref|YP_001208364.1| hypothetical protein BRADO6541 [Bradyrhizobi...   246   9e-64
ref|YP_001237258.1| hypothetical protein BBta_1102 [Bradyrhizobi...   244   4e-63
ref|YP_317359.1| DSBA oxidoreductase [Nitrobacter winogradskyi N...   241   4e-62
ref|YP_578683.1| DSBA oxidoreductase [Nitrobacter hamburgensis X...   238   4e-61

>ref|NP_767989.1| hypothetical protein blr1349 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46614.1| blr1349 [Bradyrhizobium japonicum USDA 110]
          Length = 241

 Score =  273 bits (699), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 130/175 (74%), Positives = 150/175 (85%), Gaps = 2/175 (1%)

Query: 2   TQLTKSPRXDIPVIGNPKGDITIVEWFDYNCPYCRKLAPELRQVVQDDGKVRLVLKDWPI 61
           T++ + P  D PV GNP+G+ITIVEW DYNCPYCRKL PELRQVVQDDGKVRLV+KDWPI
Sbjct: 68  TKVLRDP--DTPVAGNPEGNITIVEWSDYNCPYCRKLEPELRQVVQDDGKVRLVMKDWPI 125

Query: 62  LGPVSKVAARMALAAKYQNKFDVAHEAMISVNSRITEPRIAELLSGAGLDMDRLKKDHDA 121
           LGPVS  AAR+ALAAK+Q+K+  AH+AM+ V+SR+TEPRI ELL+ AG+DMDRLK+D   
Sbjct: 126 LGPVSVTAARIALAAKFQDKYHQAHDAMMGVSSRLTEPRINELLAAAGVDMDRLKRDLTD 185

Query: 122 NAKAIDAILSRNNEQALAFGFNGTPSFIVGKYRVPGVLSMDQFEQVIADARKANM 176
           +AK ID IL RNNEQA AFGF GTP+FIVGKYRVPGVLSM +FEQVIADARKA M
Sbjct: 186 HAKDIDTILKRNNEQAEAFGFRGTPAFIVGKYRVPGVLSMTEFEQVIADARKAKM 240


>ref|YP_001208364.1| hypothetical protein BRADO6541 [Bradyrhizobium sp. ORS 278]
 emb|CAL80149.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 190

 Score =  246 bits (629), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 116/164 (70%), Positives = 136/164 (82%)

Query: 11  DIPVIGNPKGDITIVEWFDYNCPYCRKLAPELRQVVQDDGKVRLVLKDWPILGPVSKVAA 70
           D PV+GN  GDI IVEWFDYNCPYCRKL PEL+QVV DDGKVR V+K+WPILGPVS  AA
Sbjct: 23  DAPVLGNAAGDIAIVEWFDYNCPYCRKLDPELQQVVHDDGKVRWVMKEWPILGPVSVTAA 82

Query: 71  RMALAAKYQNKFDVAHEAMISVNSRITEPRIAELLSGAGLDMDRLKKDHDANAKAIDAIL 130
           RMALA KYQ+K+  AH+A+I V+S++TE RI ELL+ AG+D+DR K+D   N KAIDA+L
Sbjct: 83  RMALATKYQDKYAKAHDALIGVSSKLTETRIDELLAEAGIDVDRAKRDLATNGKAIDAML 142

Query: 131 SRNNEQALAFGFNGTPSFIVGKYRVPGVLSMDQFEQVIADARKA 174
           +RN+ QA    F GTPSFIVGK+RVPGVL+M QFEQVIADARKA
Sbjct: 143 ARNDSQARGLRFRGTPSFIVGKFRVPGVLTMAQFEQVIADARKA 186


>ref|YP_001237258.1| hypothetical protein BBta_1102 [Bradyrhizobium sp. BTAi1]
 gb|ABQ33352.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 211

 Score =  244 bits (624), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 116/158 (73%), Positives = 133/158 (84%)

Query: 11  DIPVIGNPKGDITIVEWFDYNCPYCRKLAPELRQVVQDDGKVRLVLKDWPILGPVSKVAA 70
           D PV+GN  GDI IVEWFDYNCPYCRKL PEL QVV DDGKVR VLK+WPILGPVS VAA
Sbjct: 44  DAPVLGNAAGDIAIVEWFDYNCPYCRKLDPELHQVVHDDGKVRWVLKEWPILGPVSVVAA 103

Query: 71  RMALAAKYQNKFDVAHEAMISVNSRITEPRIAELLSGAGLDMDRLKKDHDANAKAIDAIL 130
           RMALA KYQ+K+  AHEA+I  +S++TEPRI ELLS AG+D+DR K+D  ANAKAIDA+L
Sbjct: 104 RMALACKYQDKYARAHEALIGTSSKLTEPRIDELLSEAGIDVDRAKRDLAANAKAIDAML 163

Query: 131 SRNNEQALAFGFNGTPSFIVGKYRVPGVLSMDQFEQVI 168
           +RN++QA    F GTPSFIVGK+RVPGVL+M QFEQVI
Sbjct: 164 ARNDKQARGLRFRGTPSFIVGKFRVPGVLTMAQFEQVI 201


>ref|YP_317359.1| DSBA oxidoreductase [Nitrobacter winogradskyi Nb-255]
 gb|ABA04007.1| DSBA oxidoreductase [Nitrobacter winogradskyi Nb-255]
          Length = 222

 Score =  241 bits (614), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 112/164 (68%), Positives = 136/164 (82%)

Query: 11  DIPVIGNPKGDITIVEWFDYNCPYCRKLAPELRQVVQDDGKVRLVLKDWPILGPVSKVAA 70
           +IP  GN +GDITIVE+ D+NC YCRKLAP L QVV+DDGKVRL+ KDWPILGPVS  A+
Sbjct: 53  EIPAAGNAQGDITIVEYLDFNCSYCRKLAPGLAQVVRDDGKVRLIFKDWPILGPVSVYAS 112

Query: 71  RMALAAKYQNKFDVAHEAMISVNSRITEPRIAELLSGAGLDMDRLKKDHDANAKAIDAIL 130
           R+ALA++YQ+KF VAHEA+I+  SR+TEPR+  L++ A +D+DR  KD  ANA AIDA+L
Sbjct: 113 RLALASRYQDKFVVAHEALINTRSRLTEPRVRALMADAKIDVDRAIKDMAANAGAIDAVL 172

Query: 131 SRNNEQALAFGFNGTPSFIVGKYRVPGVLSMDQFEQVIADARKA 174
            RNN+QA AFGFNGTPSFI+GK+RVPGVL+  QF Q IADARKA
Sbjct: 173 KRNNDQAAAFGFNGTPSFIIGKFRVPGVLTTAQFVQAIADARKA 216


>ref|YP_578683.1| DSBA oxidoreductase [Nitrobacter hamburgensis X14]
 gb|ABE64223.1| DSBA oxidoreductase [Nitrobacter hamburgensis X14]
          Length = 197

 Score =  238 bits (606), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 109/156 (69%), Positives = 129/156 (82%)

Query: 11  DIPVIGNPKGDITIVEWFDYNCPYCRKLAPELRQVVQDDGKVRLVLKDWPILGPVSKVAA 70
           +IP  GN  GD+TIVE+FDYNCPYCRKLAPEL QVV DDGKVRL+ KDWPILGPVS  A+
Sbjct: 28  EIPPAGNEHGDVTIVEYFDYNCPYCRKLAPELAQVVHDDGKVRLIFKDWPILGPVSVYAS 87

Query: 71  RMALAAKYQNKFDVAHEAMISVNSRITEPRIAELLSGAGLDMDRLKKDHDANAKAIDAIL 130
           R+ALA KYQ KF  AHEA++S +SR+TEPRI +LL+GA +D+DR  KD  ANA  ID IL
Sbjct: 88  RLALATKYQGKFIAAHEALMSTSSRLTEPRIRDLLAGATIDVDRALKDMAANAGTIDTIL 147

Query: 131 SRNNEQALAFGFNGTPSFIVGKYRVPGVLSMDQFEQ 166
            RNN+QA AFGFNGTP+FI+GK+RVPG L+M QF+Q
Sbjct: 148 KRNNDQAAAFGFNGTPAFIIGKFRVPGPLTMAQFDQ 183