BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0139.0003.p         (138 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_767988.1| hypothetical protein blr1348 [Bradyrhizobium ja...   225   2e-57
ref|YP_001237256.1| putative inner membrane protein yohK [Bradyr...   224   4e-57
ref|ZP_08628471.1| LrgA-associated membrane protein LrgB [Bradyr...   206   9e-52
ref|YP_567472.1| LrgB-like protein [Rhodopseudomonas palustris B...   198   2e-49
ref|YP_530515.1| LrgB-like protein [Rhodopseudomonas palustris B...   196   1e-48

>ref|NP_767988.1| hypothetical protein blr1348 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46613.1| blr1348 [Bradyrhizobium japonicum USDA 110]
          Length = 240

 Score =  225 bits (574), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 118/138 (85%), Positives = 129/138 (93%)

Query: 1   MLVALAIGSLTAIVSVVLLAQAFGLPRHVILSLAPKSVTAGVAMGISESLHADPSLTAVS 60
           MLVAL  GS+TA+VSVVLLA+  GLPR V+LSLAPKSVTAGVAMGI+ESLHADPSL AV+
Sbjct: 103 MLVALVAGSVTAVVSVVLLAELAGLPRDVVLSLAPKSVTAGVAMGIAESLHADPSLAAVA 162

Query: 61  VILTGIMGAIIVTPLMNFTGITDFRARGFAAGIAAHGIGTARAFQVDEVAGVFAGIAMSL 120
           VILTGIMGAIIVTPLMN TG+TDFRARGFAAG+AAHGIGTARAFQVDE+AGVF+GIAMSL
Sbjct: 163 VILTGIMGAIIVTPLMNRTGVTDFRARGFAAGLAAHGIGTARAFQVDEIAGVFSGIAMSL 222

Query: 121 NALVTSLLVPLAVTYLLR 138
           NALVTS LVPLAVT L+R
Sbjct: 223 NALVTSFLVPLAVTLLVR 240


>ref|YP_001237256.1| putative inner membrane protein yohK [Bradyrhizobium sp. BTAi1]
 gb|ABQ33350.1| putative Inner membrane protein yohK [Bradyrhizobium sp. BTAi1]
          Length = 240

 Score =  224 bits (570), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 114/138 (82%), Positives = 130/138 (94%)

Query: 1   MLVALAIGSLTAIVSVVLLAQAFGLPRHVILSLAPKSVTAGVAMGISESLHADPSLTAVS 60
           ML AL +GS+TAIVSV+LLA+AFGLP+ V+LSLAPKSVTAGVAMGISESLHADPSLTAV+
Sbjct: 103 MLAALIVGSITAIVSVILLAEAFGLPQDVVLSLAPKSVTAGVAMGISESLHADPSLTAVA 162

Query: 61  VILTGIMGAIIVTPLMNFTGITDFRARGFAAGIAAHGIGTARAFQVDEVAGVFAGIAMSL 120
           V+LTGI+GA+IVTPLMN TGITDFRARGFAAG+AAHGIGTARAFQVD +AG F+GIAMSL
Sbjct: 163 VVLTGIIGAVIVTPLMNSTGITDFRARGFAAGLAAHGIGTARAFQVDALAGTFSGIAMSL 222

Query: 121 NALVTSLLVPLAVTYLLR 138
           NALVTS LVP+A+T L+R
Sbjct: 223 NALVTSFLVPIAITLLVR 240


>ref|ZP_08628471.1| LrgA-associated membrane protein LrgB [Bradyrhizobiaceae bacterium
           SG-6C]
 gb|EGP08795.1| LrgA-associated membrane protein LrgB [Bradyrhizobiaceae bacterium
           SG-6C]
          Length = 240

 Score =  206 bits (524), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 106/138 (76%), Positives = 123/138 (89%)

Query: 1   MLVALAIGSLTAIVSVVLLAQAFGLPRHVILSLAPKSVTAGVAMGISESLHADPSLTAVS 60
           ML AL +GS TAIVSV+L A+A GLPR ++L+LAPKSVTAGVAMGISE+L A+P++T ++
Sbjct: 103 MLAALLVGSATAIVSVMLFAEAAGLPREIVLALAPKSVTAGVAMGISETLGANPAITVIA 162

Query: 61  VILTGIMGAIIVTPLMNFTGITDFRARGFAAGIAAHGIGTARAFQVDEVAGVFAGIAMSL 120
            +LTG+MGAI+VTP MN  GITDFRARGFA G+A+HGIGTARAFQVDEVAGVFAGIAM L
Sbjct: 163 TVLTGVMGAIVVTPTMNRLGITDFRARGFAVGLASHGIGTARAFQVDEVAGVFAGIAMGL 222

Query: 121 NALVTSLLVPLAVTYLLR 138
           NALVTSLLVPLAVT LLR
Sbjct: 223 NALVTSLLVPLAVTLLLR 240


>ref|YP_567472.1| LrgB-like protein [Rhodopseudomonas palustris BisB5]
 gb|ABE37571.1| LrgB-like protein [Rhodopseudomonas palustris BisB5]
          Length = 240

 Score =  198 bits (504), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 102/138 (73%), Positives = 123/138 (89%)

Query: 1   MLVALAIGSLTAIVSVVLLAQAFGLPRHVILSLAPKSVTAGVAMGISESLHADPSLTAVS 60
           M +AL +G + AIVSV++LAQ  GLP  V+LSLA KSVTAGVAMGISESL+ADPSLTAV+
Sbjct: 103 MALALVVGCIVAIVSVMVLAQLAGLPETVVLSLASKSVTAGVAMGISESLNADPSLTAVA 162

Query: 61  VILTGIMGAIIVTPLMNFTGITDFRARGFAAGIAAHGIGTARAFQVDEVAGVFAGIAMSL 120
           V+LTG+MGAI+VTPLMN  GI DFRARGF+ G+A+HGIGTARAFQVD +AGVFAGIAMSL
Sbjct: 163 VVLTGVMGAIMVTPLMNALGIRDFRARGFSVGLASHGIGTARAFQVDAIAGVFAGIAMSL 222

Query: 121 NALVTSLLVPLAVTYLLR 138
           NAL+T++LVP+AVT L++
Sbjct: 223 NALITAMLVPVAVTLLVK 240


>ref|YP_530515.1| LrgB-like protein [Rhodopseudomonas palustris BisB18]
 gb|ABD86196.1| LrgB-like protein [Rhodopseudomonas palustris BisB18]
          Length = 241

 Score =  196 bits (497), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 103/138 (74%), Positives = 120/138 (86%)

Query: 1   MLVALAIGSLTAIVSVVLLAQAFGLPRHVILSLAPKSVTAGVAMGISESLHADPSLTAVS 60
           ML+AL +GS+TAI SVV LA+AFGLP  V+LS+ PKSVTA VAMGI+ES+HADPSL AV+
Sbjct: 103 MLLALVVGSVTAIGSVVGLAKAFGLPDIVMLSMTPKSVTAPVAMGIAESIHADPSLAAVA 162

Query: 61  VILTGIMGAIIVTPLMNFTGITDFRARGFAAGIAAHGIGTARAFQVDEVAGVFAGIAMSL 120
           VILTGI+GAIIVTPLMN   +TDFRARGFA G+A+HGIGTA+AFQ++ VAG FAGIAMSL
Sbjct: 163 VILTGIIGAIIVTPLMNLVKVTDFRARGFAVGLASHGIGTAQAFQINPVAGAFAGIAMSL 222

Query: 121 NALVTSLLVPLAVTYLLR 138
           NAL+TSLLVPLA T L  
Sbjct: 223 NALLTSLLVPLAATLLFH 240