BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0139.0002.p         (102 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001237256.1| putative inner membrane protein yohK [Bradyr...   154   5e-36
ref|ZP_08628471.1| LrgA-associated membrane protein LrgB [Bradyr...   147   5e-34
ref|YP_530515.1| LrgB-like protein [Rhodopseudomonas palustris B...   142   2e-32
ref|NP_767988.1| hypothetical protein blr1348 [Bradyrhizobium ja...   140   4e-32
ref|YP_001768770.1| LrgB family protein [Methylobacterium sp. 4-...   126   1e-27

>ref|YP_001237256.1| putative inner membrane protein yohK [Bradyrhizobium sp. BTAi1]
 gb|ABQ33350.1| putative Inner membrane protein yohK [Bradyrhizobium sp. BTAi1]
          Length = 240

 Score =  154 bits (389), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 74/87 (85%), Positives = 81/87 (93%)

Query: 1  VSDNPFSLWVYLSQSPLLWLTVTLLTYAVADAVSLKTRRHPLANPVLHSVWIIGVFLLLT 60
          +S NPFSLWVYL+QSPLLWLTVTL+ YAV DAVSL+TRRHPLANPVLH++WI+  FLLLT
Sbjct: 1  MSANPFSLWVYLAQSPLLWLTVTLVIYAVTDAVSLRTRRHPLANPVLHAMWIVAAFLLLT 60

Query: 61 GTTYTTYFAGAQFVHFLLGPATVALAV 87
          GT YTTYFAGAQFVHFLLGPATVALAV
Sbjct: 61 GTPYTTYFAGAQFVHFLLGPATVALAV 87


>ref|ZP_08628471.1| LrgA-associated membrane protein LrgB [Bradyrhizobiaceae
          bacterium SG-6C]
 gb|EGP08795.1| LrgA-associated membrane protein LrgB [Bradyrhizobiaceae
          bacterium SG-6C]
          Length = 240

 Score =  147 bits (371), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 69/87 (79%), Positives = 79/87 (90%)

Query: 1  VSDNPFSLWVYLSQSPLLWLTVTLLTYAVADAVSLKTRRHPLANPVLHSVWIIGVFLLLT 60
          ++DNPFSLWVYLSQ+PLLWL+VTL  YA ADA+SL T R+PL NPVLHS+W+IG+FL LT
Sbjct: 1  MTDNPFSLWVYLSQTPLLWLSVTLAVYAAADALSLATHRNPLMNPVLHSIWVIGLFLYLT 60

Query: 61 GTTYTTYFAGAQFVHFLLGPATVALAV 87
          GT+YTTYF GAQFVHFLLGPATVALAV
Sbjct: 61 GTSYTTYFGGAQFVHFLLGPATVALAV 87


>ref|YP_530515.1| LrgB-like protein [Rhodopseudomonas palustris BisB18]
 gb|ABD86196.1| LrgB-like protein [Rhodopseudomonas palustris BisB18]
          Length = 241

 Score =  142 bits (357), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/85 (77%), Positives = 76/85 (89%)

Query: 3  DNPFSLWVYLSQSPLLWLTVTLLTYAVADAVSLKTRRHPLANPVLHSVWIIGVFLLLTGT 62
          DNPF+LWVYLSQSPLLWLT TL+ YA+ DAVS  +RR+PLANPVLH++W+IG+FL LTGT
Sbjct: 3  DNPFALWVYLSQSPLLWLTTTLVVYAMTDAVSQASRRNPLANPVLHAMWVIGIFLWLTGT 62

Query: 63 TYTTYFAGAQFVHFLLGPATVALAV 87
          +Y TYF GAQFVHFLLGP TVALAV
Sbjct: 63 SYQTYFEGAQFVHFLLGPVTVALAV 87


>ref|NP_767988.1| hypothetical protein blr1348 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46613.1| blr1348 [Bradyrhizobium japonicum USDA 110]
          Length = 240

 Score =  140 bits (354), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/87 (87%), Positives = 82/87 (94%)

Query: 1  VSDNPFSLWVYLSQSPLLWLTVTLLTYAVADAVSLKTRRHPLANPVLHSVWIIGVFLLLT 60
          + DNPFSLWVYLSQSPLLWLTVTLL YA  DAVSL +RRHPLANPVLH++WIIGVFLL+T
Sbjct: 1  MKDNPFSLWVYLSQSPLLWLTVTLLVYASTDAVSLASRRHPLANPVLHAMWIIGVFLLVT 60

Query: 61 GTTYTTYFAGAQFVHFLLGPATVALAV 87
          GT+YTTYFAGAQFVHFLLGPATVALAV
Sbjct: 61 GTSYTTYFAGAQFVHFLLGPATVALAV 87


>ref|YP_001768770.1| LrgB family protein [Methylobacterium sp. 4-46]
 gb|ACA16336.1| LrgB family protein [Methylobacterium sp. 4-46]
          Length = 238

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/85 (70%), Positives = 69/85 (81%)

Query: 3  DNPFSLWVYLSQSPLLWLTVTLLTYAVADAVSLKTRRHPLANPVLHSVWIIGVFLLLTGT 62
             F+LWV+L+ SPLLWLTVTL+ Y VAD VSL T RHPLANPVLH++W+IG+ L  TGT
Sbjct: 2  SQDFALWVFLAHSPLLWLTVTLVAYVVADRVSLATNRHPLANPVLHAIWMIGLVLFATGT 61

Query: 63 TYTTYFAGAQFVHFLLGPATVALAV 87
           Y  YF GAQFVHFLLGPATVALA+
Sbjct: 62 PYPVYFEGAQFVHFLLGPATVALAI 86