BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0138.0012.p (464 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002364099.1| ammonium transporter [Methylocella silvestri... 664 0.0 ref|YP_004782805.1| ammonium transporter [Acidithiobacillus ferr... 505 e-141 ref|YP_002220927.1| ammonium transporter [Acidithiobacillus ferr... 505 e-141 emb|CAZ89962.1| Ammonia channel precursor (Ammonia transporter) ... 495 e-138 ref|YP_003644488.1| ammonium transporter [Thiomonas intermedia K... 493 e-137 >ref|YP_002364099.1| ammonium transporter [Methylocella silvestris BL2] gb|ACK52737.1| ammonium transporter [Methylocella silvestris BL2] Length = 466 Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/419 (77%), Positives = 363/419 (86%), Gaps = 1/419 (0%) Query: 46 KILQKCTPNSGDTAWMLTSVALVLMMTVPGLGLFYGGMVRKKNVGDTVMTSFAVTCLVTI 105 K L CTPNSGDTAWMLTSVALVLMMTVPGLGLFYGGMVRKKNV DTVMTSFA+TCL+T Sbjct: 49 KTLLACTPNSGDTAWMLTSVALVLMMTVPGLGLFYGGMVRKKNVADTVMTSFAITCLITF 108 Query: 106 LFAVLTYSLAFRAGTPFIGGLDRLFLKDILSDIGKGGIGNPNPLAATIPEAVYICFQMTF 165 LFA +TYS++FRAG+P+IGG DR FL+ ILSD+ KG +GNPNPLA TIPE VYICFQMTF Sbjct: 109 LFAAVTYSMSFRAGSPYIGGFDRAFLQGILSDVAKG-VGNPNPLAPTIPETVYICFQMTF 167 Query: 166 AIITPALIAGAFAERMKFSAMLWFIGLWAIFVYAPIAHWVWGPDGIFSAGNDAAYVKVLD 225 AIITPALIAGAFAERMKFSAMLWFIGLWAI VYAPIAHWVWGPDGI ++ NDAA KVLD Sbjct: 168 AIITPALIAGAFAERMKFSAMLWFIGLWAILVYAPIAHWVWGPDGILNSTNDAAIAKVLD 227 Query: 226 FAGGTVVHINAGVAGLMCAIMLGKRVETGPAHNMVLTFIGASLLWVGWFGFNAGSAVTAG 285 FAGGTVVH+N+GVAGLMCA+MLG+R +TGPAHN+VLTFIGASLLWVGWFGFNAGSAVTAG Sbjct: 228 FAGGTVVHVNSGVAGLMCALMLGRRRDTGPAHNVVLTFIGASLLWVGWFGFNAGSAVTAG 287 Query: 286 MQAGMAMLVTQIATAVAGFTWMLVEWALKGKPTVVGICSGAVAGLVAITPASGFVGPVGA 345 +QAGMAM VTQIATAVA WM VEW +GKPTVVGICSGAVAGLVAITPASGFVGP G+ Sbjct: 288 IQAGMAMTVTQIATAVAALAWMFVEWGHRGKPTVVGICSGAVAGLVAITPASGFVGPAGS 347 Query: 346 FAIGIAAGVCCYWGCTGLKRLFSYDDALDCFGVHALGGIVGALLTGVFAVEQYGGTAGVL 405 AIG AGV CY T LK YDDALDCFGVH +GG GA+LTGVFA+++YGGT G+L Sbjct: 348 MAIGAIAGVLCYASVTWLKTALGYDDALDCFGVHGVGGATGAILTGVFAIQEYGGTPGLL 407 Query: 406 EGNAGQFVNQCIGVATVFVYDAVVSLIILFVINLFVGLRVTQDIEREGLDLALHGEVVQ 464 EGN Q VNQ +GV V YDA+VSLI+LF+I+ +GLRVT D+E EGLD++LHGE+V Sbjct: 408 EGNPHQVVNQLVGVVIVIAYDAIVSLILLFLIDKTIGLRVTPDVELEGLDISLHGELVH 466 >ref|YP_004782805.1| ammonium transporter [Acidithiobacillus ferrivorans SS3] gb|AEM46479.1| ammonium transporter [Acidithiobacillus ferrivorans SS3] Length = 438 Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust. Identities = 264/420 (62%), Positives = 312/420 (74%), Gaps = 19/420 (4%) Query: 50 KCTP--NSGDTAWMLTSVALVLMMTVPGLGLFYGGMVRKKNVGDTVMTSFAVTCLVTILF 107 TP NSGDTAWML+S ALVL+MTVPGL LFY GMVRKKNV T SFA+T L+++L+ Sbjct: 30 DTTPPFNSGDTAWMLSSTALVLLMTVPGLALFYAGMVRKKNVLATAAQSFAITALISVLW 89 Query: 108 AVLTYSLAFRAGTPFIGGLDRLFLKDILSDIGKGGIGNPNPLAATIPEAVYICFQMTFAI 167 ++ YSL F AG F+GGL RLFL + G+ + N LA TIPE+VY+ FQMTFAI Sbjct: 90 MIIGYSLTFTAGNAFMGGLSRLFLNGM-------GLDSANDLAPTIPESVYMTFQMTFAI 142 Query: 168 ITPALIAGAFAERMKFSAMLWFIGLWAIFVYAPIAHWVWGPDGIFSAGNDAAYVKVLDFA 227 ITPALI GAFAERMKFSA+LWF GLW++ VYAPIAH VWGP G +A VLD+A Sbjct: 143 ITPALIVGAFAERMKFSALLWFTGLWSLLVYAPIAHMVWGPGGWLAADG------VLDYA 196 Query: 228 GGTVVHINAGVAGLMCAIMLGKRV----ETGPAHNMVLTFIGASLLWVGWFGFNAGSAVT 283 GGTVVHINAG+AGL+ A+++GKR+ + +N++ T IGASLLWVGWFGFNAGSAV Sbjct: 197 GGTVVHINAGIAGLVAALVMGKRIGYRHDIMHPNNLMYTLIGASLLWVGWFGFNAGSAVA 256 Query: 284 AGMQAGMAMLVTQIATAVAGFTWMLVEWALKGKPTVVGICSGAVAGLVAITPASGFVGPV 343 A +AGMAM TQIATAVA +WM EW +GKPTV+G+ SGAVAGLVAITPASGFVGP+ Sbjct: 257 ASDRAGMAMATTQIATAVAALSWMFAEWLARGKPTVLGMTSGAVAGLVAITPASGFVGPM 316 Query: 344 GAFAIGIAAGVCCYWGCTGLKRLFSYDDALDCFGVHALGGIVGALLTGVFAVEQYGGTAG 403 GA IG+ AG C+W LK YDD+LD FGVHA+GGI+GALLTGVFAV+ GGTAG Sbjct: 317 GALWIGLVAGAICFWAAVYLKNQLGYDDSLDAFGVHAIGGIIGALLTGVFAVKAIGGTAG 376 Query: 404 VLEGNAGQFVNQCIGVATVFVYDAVVSLIILFVINLFVGLRVTQDIEREGLDLALHGEVV 463 VLEGN GQ + Q GV VYDA+VS IIL I+ +GLRV + EREGLD+ HGE V Sbjct: 377 VLEGNTGQLLIQATGVGVTIVYDAIVSFIILKAIDWTLGLRVKDEQEREGLDITQHGEQV 436 >ref|YP_002220927.1| ammonium transporter [Acidithiobacillus ferrooxidans ATCC 53993] ref|YP_002427279.1| ammonium transporter [Acidithiobacillus ferrooxidans ATCC 23270] gb|ACH84720.1| ammonium transporter [Acidithiobacillus ferrooxidans ATCC 53993] gb|ACK78626.1| ammonium transporter [Acidithiobacillus ferrooxidans ATCC 23270] Length = 438 Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust. Identities = 267/420 (63%), Positives = 314/420 (74%), Gaps = 18/420 (4%) Query: 49 QKCTP-NSGDTAWMLTSVALVLMMTVPGLGLFYGGMVRKKNVGDTVMTSFAVTCLVTILF 107 TP NSGDTAWML+S ALVL+MTVPGL LFY GMVRKKNV T SFA+T LV++L+ Sbjct: 30 DTTTPFNSGDTAWMLSSTALVLLMTVPGLALFYAGMVRKKNVLATAAQSFAITALVSVLW 89 Query: 108 AVLTYSLAFRAGTPFIGGLDRLFLKDILSDIGKGGIGNPNPLAATIPEAVYICFQMTFAI 167 + YSL F +G F+GGL RLFL + G+ + N LA TIPE+VY+ FQMTFAI Sbjct: 90 MFIGYSLTFTSGNAFMGGLSRLFLNGM-------GLDSANGLAPTIPESVYMTFQMTFAI 142 Query: 168 ITPALIAGAFAERMKFSAMLWFIGLWAIFVYAPIAHWVWGPDGIFSAGNDAAYVKVLDFA 227 ITPALI GAFAERMKFSA+LWF GLW++ VYAPIAH VWGP G +A VLD+A Sbjct: 143 ITPALIVGAFAERMKFSALLWFTGLWSLLVYAPIAHMVWGPGGWLAADG------VLDYA 196 Query: 228 GGTVVHINAGVAGLMCAIMLGKRV----ETGPAHNMVLTFIGASLLWVGWFGFNAGSAVT 283 GGTVVHINAG+AGL+ A+++GKR+ + +N++ T IGASLLWVGWFGFNAGSAV Sbjct: 197 GGTVVHINAGIAGLVAALVMGKRIGYRHDAMHPNNLMYTLIGASLLWVGWFGFNAGSAVA 256 Query: 284 AGMQAGMAMLVTQIATAVAGFTWMLVEWALKGKPTVVGICSGAVAGLVAITPASGFVGPV 343 A +AGMAM TQIATAVA +WM EW +GKPTV+G+ SGAVAGLVAITPASGFVGP+ Sbjct: 257 ASDRAGMAMSTTQIATAVATLSWMFAEWLARGKPTVLGMTSGAVAGLVAITPASGFVGPM 316 Query: 344 GAFAIGIAAGVCCYWGCTGLKRLFSYDDALDCFGVHALGGIVGALLTGVFAVEQYGGTAG 403 GA IG+AAGV C+W LK YDD+LD FGVHA+GGI+GALLTGVFAV+ GGTAG Sbjct: 317 GALWIGLAAGVICFWAAVYLKNRLGYDDSLDAFGVHAIGGIIGALLTGVFAVKAIGGTAG 376 Query: 404 VLEGNAGQFVNQCIGVATVFVYDAVVSLIILFVINLFVGLRVTQDIEREGLDLALHGEVV 463 +LEGN GQ + Q GV VYDAVVS IIL VI+ +GLRV + EREGLD+ HGE V Sbjct: 377 MLEGNTGQLLIQATGVGVTIVYDAVVSFIILKVIDWTLGLRVIGEQEREGLDITQHGEQV 436 >emb|CAZ89962.1| Ammonia channel precursor (Ammonia transporter) [Thiomonas sp. 3As] Length = 439 Score = 495 bits (1275), Expect = e-138, Method: Compositional matrix adjust. Identities = 267/414 (64%), Positives = 314/414 (75%), Gaps = 18/414 (4%) Query: 54 NSGDTAWMLTSVALVLMMTVPGLGLFYGGMVRKKNVGDTVMTSFAVTCLVTILFAVLTYS 113 NSGD AWMLTS ALVLMMT+PGL LFYGGMVRKKNV T+M SFA+TCLVT+L+ ++ YS Sbjct: 39 NSGDNAWMLTSTALVLMMTIPGLALFYGGMVRKKNVLATLMQSFAITCLVTVLWMIIGYS 98 Query: 114 LAFRAGTPFIGGLDRLFLKDILSDIGKGGIGNPNPLAATIPEAVYICFQMTFAIITPALI 173 LAF G FIGGL R FL G G+ + NPLA TIPE+ Y+ FQMTFAIITPALI Sbjct: 99 LAFTPGNGFIGGLSRFFL-------GGMGLDSANPLAPTIPESTYMTFQMTFAIITPALI 151 Query: 174 AGAFAERMKFSAMLWFIGLWAIFVYAPIAHWVWGPDGIFSAGNDAAYVKVLDFAGGTVVH 233 G+FA+RMKFSA+LWF+G+W + VYAPIAH VW G VLD+AGGTVVH Sbjct: 152 VGSFADRMKFSALLWFMGIWLLAVYAPIAHMVW-------GGGFLGGDGVLDYAGGTVVH 204 Query: 234 INAGVAGLMCAIMLGKRV----ETGPAHNMVLTFIGASLLWVGWFGFNAGSAVTAGMQAG 289 INAG+AGL+ A+++GKRV E P HN++LT IGASLLWVGWFGFNAGSAV A +AG Sbjct: 205 INAGIAGLVAALVMGKRVGYGKEAMPPHNLILTMIGASLLWVGWFGFNAGSAVAASDRAG 264 Query: 290 MAMLVTQIATAVAGFTWMLVEWALKGKPTVVGICSGAVAGLVAITPASGFVGPVGAFAIG 349 MAM TQIATA A WM EW +GKPT++GI SGAVAGLVAITPASGFVGP GA AIG Sbjct: 265 MAMAATQIATAAAALGWMFAEWIARGKPTILGITSGAVAGLVAITPASGFVGPGGALAIG 324 Query: 350 IAAGVCCYWGCTGLKRLFSYDDALDCFGVHALGGIVGALLTGVFAVEQYGGTAGVLEGNA 409 + AGV C+W +K + YDD+LD FGVHA+GGIVGA+LTGVFAV+ GGTAG LEGN Sbjct: 325 LIAGVVCFWTAVYMKEMIGYDDSLDAFGVHAIGGIVGAMLTGVFAVKAIGGTAGALEGNM 384 Query: 410 GQFVNQCIGVATVFVYDAVVSLIILFVINLFVGLRVTQDIEREGLDLALHGEVV 463 Q + Q GV VYDA+V+ IIL VI++ +GLRVT++ EREGLD++LHGE V Sbjct: 385 AQILIQAKGVGFTIVYDAIVTFIILKVIDMVIGLRVTEEQEREGLDISLHGEQV 438 >ref|YP_003644488.1| ammonium transporter [Thiomonas intermedia K12] gb|ADG32158.1| ammonium transporter [Thiomonas intermedia K12] Length = 439 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 266/414 (64%), Positives = 313/414 (75%), Gaps = 18/414 (4%) Query: 54 NSGDTAWMLTSVALVLMMTVPGLGLFYGGMVRKKNVGDTVMTSFAVTCLVTILFAVLTYS 113 NSGD AWMLTS ALVLMMT+PGL LFYGGMVRKKNV T+M SFA+TCLVT+L+ ++ YS Sbjct: 39 NSGDNAWMLTSTALVLMMTIPGLALFYGGMVRKKNVLATLMQSFAITCLVTVLWMIIGYS 98 Query: 114 LAFRAGTPFIGGLDRLFLKDILSDIGKGGIGNPNPLAATIPEAVYICFQMTFAIITPALI 173 LAF G FIGGL R FL G G+ + NPLA TIPE+ Y+ FQMTFAIITPALI Sbjct: 99 LAFTPGNGFIGGLSRFFL-------GGMGLDSANPLAPTIPESTYMTFQMTFAIITPALI 151 Query: 174 AGAFAERMKFSAMLWFIGLWAIFVYAPIAHWVWGPDGIFSAGNDAAYVKVLDFAGGTVVH 233 G+FA+RMKFSA+LWF+G+W + VYAPIAH VW G VLD+AGGTVVH Sbjct: 152 VGSFADRMKFSALLWFMGIWLLAVYAPIAHMVW-------GGGFLGGDGVLDYAGGTVVH 204 Query: 234 INAGVAGLMCAIMLGKRV----ETGPAHNMVLTFIGASLLWVGWFGFNAGSAVTAGMQAG 289 INAG+AGL+ A+++GKR+ E P HN+VLT IGASLLWVGWFGFNAGSAV A +AG Sbjct: 205 INAGIAGLVAALVMGKRIGYGKEAMPPHNLVLTMIGASLLWVGWFGFNAGSAVAASDRAG 264 Query: 290 MAMLVTQIATAVAGFTWMLVEWALKGKPTVVGICSGAVAGLVAITPASGFVGPVGAFAIG 349 MAM TQIATA A WM EW +GKPT++GI SGAVAGLVAITPASGFVGP GA AIG Sbjct: 265 MAMAATQIATAAAALGWMFAEWIARGKPTILGITSGAVAGLVAITPASGFVGPGGALAIG 324 Query: 350 IAAGVCCYWGCTGLKRLFSYDDALDCFGVHALGGIVGALLTGVFAVEQYGGTAGVLEGNA 409 + AGV C+W +K + YDD+LD FGVHA+GGIVGA+LTGVFAV+ GGTAG LEGN Sbjct: 325 LIAGVVCFWTAVYMKEMIGYDDSLDAFGVHAIGGIVGAMLTGVFAVKAIGGTAGALEGNM 384 Query: 410 GQFVNQCIGVATVFVYDAVVSLIILFVINLFVGLRVTQDIEREGLDLALHGEVV 463 Q + Q GV VYDA+++ IIL VI+ +GLRVT++ EREGLD++LHGE V Sbjct: 385 AQVLIQAKGVGFTIVYDAIITFIILKVIDRVIGLRVTEEQEREGLDISLHGEQV 438