BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0138.0005.p (457 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08630261.1| pole remodelling regulatory diguanylate cycla... 819 0.0 ref|YP_004108619.1| response regulator receiver modulated diguan... 817 0.0 ref|YP_570165.1| response regulator PleD [Rhodopseudomonas palus... 815 0.0 ref|YP_001206477.1| response regulator PleD [Bradyrhizobium sp. ... 814 0.0 ref|NP_948471.1| response regulator PleD [Rhodopseudomonas palus... 812 0.0 >ref|ZP_08630261.1| pole remodelling regulatory diguanylate cyclase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07134.1| pole remodelling regulatory diguanylate cyclase [Bradyrhizobiaceae bacterium SG-6C] Length = 457 Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/457 (86%), Positives = 435/457 (95%) Query: 1 MSARILVVDDVPANVKLLEARLSAEYFDVLTASNGTEALEICARAECDIILLDVMMPDMD 60 MSAR+LVVDDV ANVKLLEARLSAEYFDV+TA+ GT+ALEIC RAECDI+LLDVMMPD+D Sbjct: 1 MSARVLVVDDVLANVKLLEARLSAEYFDVVTANCGTQALEICERAECDIVLLDVMMPDID 60 Query: 61 GFEVCRRLKSNPATHFIPVVIVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120 GFEVCRRLKSNP THFIPV++VTALDSP+DRVRGL+AGADDFLTKPVSDVV+IARVRSLT Sbjct: 61 GFEVCRRLKSNPKTHFIPVIMVTALDSPSDRVRGLDAGADDFLTKPVSDVVMIARVRSLT 120 Query: 121 RLKMMTDELRMRAITSLEIGMQAPERSAIADKGTGGRILLVDDRPSSYEKLAPILSAEHT 180 RLKMMTDELRMRAITSLEIG+ APER A+ D G GGR+LLVDDRPSSYE+LAP+L++EH Sbjct: 121 RLKMMTDELRMRAITSLEIGVNAPEREAVTDTGKGGRVLLVDDRPSSYERLAPVLASEHH 180 Query: 181 VDVEINPSEALFHAAEGNYDLLIVSLSLDNYDGLRLCSQARSLERTRQVPILAISDADNN 240 VDVE NP+EALFHAA+GNYDLLIVSL L+N+DGLRLCSQARSLERTR +PILAI+DADNN Sbjct: 181 VDVEPNPAEALFHAADGNYDLLIVSLGLENFDGLRLCSQARSLERTRSIPILAIADADNN 240 Query: 241 TRLMRGLEIGVNDYLLRPVDKNELLARARTQIRRRRYTDHLRDNVQNSIEMAITDALTGL 300 TRL+RGLEIGVNDYLLRPVDKNELLARARTQ+R+RRYTDHLRDNVQNSIEMAITD LTGL Sbjct: 241 TRLLRGLEIGVNDYLLRPVDKNELLARARTQVRKRRYTDHLRDNVQNSIEMAITDPLTGL 300 Query: 301 NNRRYMESHLATLAEQASIRGKPLALMILDIDYFKAINDTYGHDAGDDVLREFAVRIRKS 360 +NRRYMESHLATLAEQA++R KPLALM+LDIDYFK+IND YGHDAGDDVLREFAVRIRKS Sbjct: 301 HNRRYMESHLATLAEQAAMRAKPLALMMLDIDYFKSINDNYGHDAGDDVLREFAVRIRKS 360 Query: 361 IRGIDLACRYGGEEFVIVMPETDLHVAGMVAERLRRSIAGEPFSVDKGGKRITVTISIGL 420 IRGIDLACR+GGEEFVIVMPETDLHVAGMVAERLRRSIAGEPF+++KG KRI VTISIG+ Sbjct: 361 IRGIDLACRFGGEEFVIVMPETDLHVAGMVAERLRRSIAGEPFAIEKGAKRIEVTISIGI 420 Query: 421 TTLERKGEQVTDVLKRADTALYRAKHDGRNRVVSAAA 457 +TLE KGE V+ VLKRAD ALYRAKHDGRNRVV+AAA Sbjct: 421 STLETKGEPVSAVLKRADQALYRAKHDGRNRVVAAAA 457 >ref|YP_004108619.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris DX-1] gb|ADU43886.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris DX-1] Length = 457 Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/457 (89%), Positives = 439/457 (96%) Query: 1 MSARILVVDDVPANVKLLEARLSAEYFDVLTASNGTEALEICARAECDIILLDVMMPDMD 60 MSARILVVDD+PANVKLLE RLSAEYFDV+TASNG EALEIC RAECDI+LLDVMMPDMD Sbjct: 1 MSARILVVDDIPANVKLLEDRLSAEYFDVITASNGVEALEICQRAECDIVLLDVMMPDMD 60 Query: 61 GFEVCRRLKSNPATHFIPVVIVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120 GFEVCRRLK+NP THFIPVV+VTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLT Sbjct: 61 GFEVCRRLKANPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120 Query: 121 RLKMMTDELRMRAITSLEIGMQAPERSAIADKGTGGRILLVDDRPSSYEKLAPILSAEHT 180 RLKMMTDELRMRAITSLEIGMQAPER A+AD+G GGRILLVDDRPSSYE+LAP+LSAEH Sbjct: 121 RLKMMTDELRMRAITSLEIGMQAPEREAVADQGKGGRILLVDDRPSSYERLAPLLSAEHD 180 Query: 181 VDVEINPSEALFHAAEGNYDLLIVSLSLDNYDGLRLCSQARSLERTRQVPILAISDADNN 240 VDVE NPSEALFHAAEGNYDLLIVSL L+N+DGLRLCSQARSLERTR VPILAI+DA+NN Sbjct: 181 VDVETNPSEALFHAAEGNYDLLIVSLGLENFDGLRLCSQARSLERTRHVPILAIADAENN 240 Query: 241 TRLMRGLEIGVNDYLLRPVDKNELLARARTQIRRRRYTDHLRDNVQNSIEMAITDALTGL 300 RL+RGLEIGVNDYLLRPVDKNEL+ARARTQIRRRRYTDHLRDNVQ+SIEMAITD LTGL Sbjct: 241 ARLLRGLEIGVNDYLLRPVDKNELMARARTQIRRRRYTDHLRDNVQHSIEMAITDGLTGL 300 Query: 301 NNRRYMESHLATLAEQASIRGKPLALMILDIDYFKAINDTYGHDAGDDVLREFAVRIRKS 360 +NRRYMESHLATLAEQAS RGKPLALMILDID+FK+IND+YGHDAGDDVLREFA+RI+KS Sbjct: 301 HNRRYMESHLATLAEQASARGKPLALMILDIDFFKSINDSYGHDAGDDVLREFALRIKKS 360 Query: 361 IRGIDLACRYGGEEFVIVMPETDLHVAGMVAERLRRSIAGEPFSVDKGGKRITVTISIGL 420 IRGIDLACRYGGEEFVIVMPETDLHVA MVAERLRR+IAGEPF+V+KG +RI VTISIGL Sbjct: 361 IRGIDLACRYGGEEFVIVMPETDLHVAQMVAERLRRAIAGEPFAVEKGTRRIEVTISIGL 420 Query: 421 TTLERKGEQVTDVLKRADTALYRAKHDGRNRVVSAAA 457 +TLERKGE + D+LKRADTALYRAKHDGRNRVV+AAA Sbjct: 421 STLERKGEPIPDLLKRADTALYRAKHDGRNRVVAAAA 457 >ref|YP_570165.1| response regulator PleD [Rhodopseudomonas palustris BisB5] gb|ABE40264.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris BisB5] Length = 457 Score = 815 bits (2105), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/457 (89%), Positives = 438/457 (95%) Query: 1 MSARILVVDDVPANVKLLEARLSAEYFDVLTASNGTEALEICARAECDIILLDVMMPDMD 60 MSARILVVDD+PANV+LLEARLSAEYFDV+TASNG +ALEICARAECDI+LLDVMMPDMD Sbjct: 1 MSARILVVDDIPANVRLLEARLSAEYFDVVTASNGAQALEICARAECDIVLLDVMMPDMD 60 Query: 61 GFEVCRRLKSNPATHFIPVVIVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120 GFEVCRRLK+NP THFIPVV+VTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLT Sbjct: 61 GFEVCRRLKANPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120 Query: 121 RLKMMTDELRMRAITSLEIGMQAPERSAIADKGTGGRILLVDDRPSSYEKLAPILSAEHT 180 RLKMMTDELRMRAITSLEIGMQAPER A++D+G GGRILLVDDRPSSYE+LAP+L+AEH Sbjct: 121 RLKMMTDELRMRAITSLEIGMQAPEREAVSDQGKGGRILLVDDRPSSYERLAPLLAAEHD 180 Query: 181 VDVEINPSEALFHAAEGNYDLLIVSLSLDNYDGLRLCSQARSLERTRQVPILAISDADNN 240 +DVE NPSEALFHAAEGNYDLLIVSL L+++DGLRLCSQARSLERTR VPILAI+DA+NN Sbjct: 181 IDVEANPSEALFHAAEGNYDLLIVSLGLEDFDGLRLCSQARSLERTRHVPILAIADAENN 240 Query: 241 TRLMRGLEIGVNDYLLRPVDKNELLARARTQIRRRRYTDHLRDNVQNSIEMAITDALTGL 300 RL+RGLEIGVNDYLLRPVDKNELLARARTQIRRRRYTDHLRDNVQ+SIEMAITD LTGL Sbjct: 241 ARLLRGLEIGVNDYLLRPVDKNELLARARTQIRRRRYTDHLRDNVQHSIEMAITDGLTGL 300 Query: 301 NNRRYMESHLATLAEQASIRGKPLALMILDIDYFKAINDTYGHDAGDDVLREFAVRIRKS 360 +NRRYMESHLATLAEQA RGKPLALMILDID+FK+IND+YGHDAGDDVLREFA RIRKS Sbjct: 301 HNRRYMESHLATLAEQAGARGKPLALMILDIDFFKSINDSYGHDAGDDVLREFATRIRKS 360 Query: 361 IRGIDLACRYGGEEFVIVMPETDLHVAGMVAERLRRSIAGEPFSVDKGGKRITVTISIGL 420 IRGIDLACRYGGEEFVIVMPETDLHVA MVAERLRR+IAGEPF ++KG KRI VTISIGL Sbjct: 361 IRGIDLACRYGGEEFVIVMPETDLHVAQMVAERLRRAIAGEPFGIEKGAKRIEVTISIGL 420 Query: 421 TTLERKGEQVTDVLKRADTALYRAKHDGRNRVVSAAA 457 +TLERKGE V D+LKRADTALYRAKHDGRNRVV+AAA Sbjct: 421 STLERKGEPVRDLLKRADTALYRAKHDGRNRVVAAAA 457 >ref|YP_001206477.1| response regulator PleD [Bradyrhizobium sp. ORS 278] emb|CAL78257.1| response regulator PleD (with diguanylate cyclase and response regulator receiver domains) [Bradyrhizobium sp. ORS 278] Length = 473 Score = 814 bits (2102), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/456 (85%), Positives = 437/456 (95%) Query: 1 MSARILVVDDVPANVKLLEARLSAEYFDVLTASNGTEALEICARAECDIILLDVMMPDMD 60 MSARILVVDDVPANVKLLEARLSAEYFDVLTASNG EAL+IC RAECDIILLDVMMPDMD Sbjct: 1 MSARILVVDDVPANVKLLEARLSAEYFDVLTASNGAEALQICQRAECDIILLDVMMPDMD 60 Query: 61 GFEVCRRLKSNPATHFIPVVIVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120 GFEVCRRLKSNPATHFIPVV+VTALDSP+DRVRGLEAGADDFLTKPVSDVVLIARVRSLT Sbjct: 61 GFEVCRRLKSNPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120 Query: 121 RLKMMTDELRMRAITSLEIGMQAPERSAIADKGTGGRILLVDDRPSSYEKLAPILSAEHT 180 RLKMMTDELRMRA+TSLEIG+QAPER+A+AD G GGRILLVDDRPSSYE+L P+L+ EH+ Sbjct: 121 RLKMMTDELRMRALTSLEIGVQAPERNAVADAGKGGRILLVDDRPSSYERLGPMLATEHS 180 Query: 181 VDVEINPSEALFHAAEGNYDLLIVSLSLDNYDGLRLCSQARSLERTRQVPILAISDADNN 240 VDVE +P+EA+F+AA+GNYDL+IVSL LD++DGLRLCSQ RSLERTR VPILAI++A+NN Sbjct: 181 VDVEPHPAEAVFNAADGNYDLVIVSLDLDDFDGLRLCSQLRSLERTRHVPILAIAEAENN 240 Query: 241 TRLMRGLEIGVNDYLLRPVDKNELLARARTQIRRRRYTDHLRDNVQNSIEMAITDALTGL 300 +RL+RGLEIGVNDYLLRPVDKNELLARARTQIR+RRYTDHLRDNVQNSIEMAITDALTGL Sbjct: 241 SRLLRGLEIGVNDYLLRPVDKNELLARARTQIRKRRYTDHLRDNVQNSIEMAITDALTGL 300 Query: 301 NNRRYMESHLATLAEQASIRGKPLALMILDIDYFKAINDTYGHDAGDDVLREFAVRIRKS 360 +NRRYME+HL+TLA+QA+ RGKPLALM+LD+DYFK+INDTYGHDAGDDVLREFA+R+RKS Sbjct: 301 HNRRYMETHLSTLADQAASRGKPLALMMLDLDYFKSINDTYGHDAGDDVLREFAMRVRKS 360 Query: 361 IRGIDLACRYGGEEFVIVMPETDLHVAGMVAERLRRSIAGEPFSVDKGGKRITVTISIGL 420 IRGIDLACRYGGEEFVIVMPETDLHVAGMVAERLRRS+A EPFSV KG KRI VT+SIG+ Sbjct: 361 IRGIDLACRYGGEEFVIVMPETDLHVAGMVAERLRRSVANEPFSVHKGEKRIDVTVSIGI 420 Query: 421 TTLERKGEQVTDVLKRADTALYRAKHDGRNRVVSAA 456 +TLE+KGE + DV+KRADTALYRAK++GRNR V+ A Sbjct: 421 STLEQKGEPIADVMKRADTALYRAKNEGRNRAVAIA 456 >ref|NP_948471.1| response regulator PleD [Rhodopseudomonas palustris CGA009] ref|YP_001992516.1| response regulator PleD [Rhodopseudomonas palustris TIE-1] emb|CAE28573.1| putative diguanylate cyclase (GGDEF) with response regulator receiver domain [Rhodopseudomonas palustris CGA009] gb|ACF02041.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris TIE-1] Length = 457 Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/457 (88%), Positives = 438/457 (95%) Query: 1 MSARILVVDDVPANVKLLEARLSAEYFDVLTASNGTEALEICARAECDIILLDVMMPDMD 60 MSARILVVDD+PANVKLLE RLSAEYFDV+TASNG +ALEIC RAECDI+LLDVMMPDMD Sbjct: 1 MSARILVVDDIPANVKLLEDRLSAEYFDVITASNGIQALEICQRAECDIVLLDVMMPDMD 60 Query: 61 GFEVCRRLKSNPATHFIPVVIVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120 GFEVCRRLKSNP THFIPVV+VTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLT Sbjct: 61 GFEVCRRLKSNPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120 Query: 121 RLKMMTDELRMRAITSLEIGMQAPERSAIADKGTGGRILLVDDRPSSYEKLAPILSAEHT 180 RLKMMTDELRMRAITSLEIGMQAPER A+AD+G GGRILLVDDRPSSYE+LAP+LSAEH Sbjct: 121 RLKMMTDELRMRAITSLEIGMQAPEREAVADQGKGGRILLVDDRPSSYERLAPLLSAEHD 180 Query: 181 VDVEINPSEALFHAAEGNYDLLIVSLSLDNYDGLRLCSQARSLERTRQVPILAISDADNN 240 VDVE NPSEALFHAA+GNYDLLIVSL L+N+DGLRLCSQARSLERTR VPILAI++A+NN Sbjct: 181 VDVETNPSEALFHAADGNYDLLIVSLGLENFDGLRLCSQARSLERTRHVPILAIAEAENN 240 Query: 241 TRLMRGLEIGVNDYLLRPVDKNELLARARTQIRRRRYTDHLRDNVQNSIEMAITDALTGL 300 RL+RGLEIGVNDYLLRPVDKNEL+ARARTQIRRRRYTDHLRDNVQ+SIEMAITD LTGL Sbjct: 241 ARLLRGLEIGVNDYLLRPVDKNELMARARTQIRRRRYTDHLRDNVQHSIEMAITDGLTGL 300 Query: 301 NNRRYMESHLATLAEQASIRGKPLALMILDIDYFKAINDTYGHDAGDDVLREFAVRIRKS 360 +NRRYMESHLATLAEQA RGKPLALMILDID+FK+IND+YGHDAGDDVLREFA+RI+KS Sbjct: 301 HNRRYMESHLATLAEQAGARGKPLALMILDIDFFKSINDSYGHDAGDDVLREFALRIKKS 360 Query: 361 IRGIDLACRYGGEEFVIVMPETDLHVAGMVAERLRRSIAGEPFSVDKGGKRITVTISIGL 420 IRGIDLACRYGGEEFVIVMPETDLHVA MVAERLRR+IAGEPF+++KG +RI VTISIGL Sbjct: 361 IRGIDLACRYGGEEFVIVMPETDLHVAQMVAERLRRAIAGEPFAIEKGTRRIEVTISIGL 420 Query: 421 TTLERKGEQVTDVLKRADTALYRAKHDGRNRVVSAAA 457 +TLERKGE + D+LKRADTALYRAKHDGRNRVV+AAA Sbjct: 421 STLERKGEPIPDLLKRADTALYRAKHDGRNRVVAAAA 457