BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0138.0002.p (433 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_577695.1| DNA polymerase IV [Nitrobacter hamburgensis X14... 735 0.0 ref|YP_001240681.1| DNA polymerase IV [Bradyrhizobium sp. BTAi1]... 734 0.0 ref|NP_771766.1| DNA polymerase IV [Bradyrhizobium japonicum USD... 733 0.0 ref|YP_001206480.1| DNA polymerase IV [Bradyrhizobium sp. ORS 27... 731 0.0 ref|YP_318042.1| DNA polymerase IV [Nitrobacter winogradskyi Nb-... 705 0.0 >ref|YP_577695.1| DNA polymerase IV [Nitrobacter hamburgensis X14] gb|ABE63235.1| DNA-directed DNA polymerase [Nitrobacter hamburgensis X14] Length = 429 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/419 (85%), Positives = 380/419 (90%) Query: 11 PLSFCRDCLGDLDIKVKRCSHCGSPRLVRHRALPALALAHIDCDAFYATVEKRDNPEIAD 70 PL CRDC GD D RCS CGSPRLVRHR LP L LAHIDCDAFYATVEKRDNP +AD Sbjct: 9 PLCICRDCFGDPDFAAVRCSTCGSPRLVRHRTLPTLTLAHIDCDAFYATVEKRDNPALAD 68 Query: 71 RPVIIGGGKRGVVSAACYIARTYGVRSAMPMFKALELCPDATVIPPDMAKYVRVGREVRQ 130 +PVIIGGG+RGVVSAACYIARTYGV SAMPMFKAL LCP A VI PDM KYVRVGREVR Sbjct: 69 KPVIIGGGRRGVVSAACYIARTYGVHSAMPMFKALALCPSAAVIAPDMTKYVRVGREVRH 128 Query: 131 AMQALTPLVEPLSIDEAFLDLAGTQRVHGMIPAKVLAKFARDVERDIGITVSVGLSCNKF 190 AMQALTPLVEPLSIDEAFLDL GTQRVHGMIPAKVLAKFA DVER IGITVSVGLSCNKF Sbjct: 129 AMQALTPLVEPLSIDEAFLDLGGTQRVHGMIPAKVLAKFAADVERTIGITVSVGLSCNKF 188 Query: 191 LAKIASDLDKPRGFAALDQDEAREMLASKPVGFIYGVGPATQEKLVQRGFRIIADLQRAD 250 LAKIASDLDKPRGFAALD DEAR MLA KPVGFI+GVGPATQE+L Q GFR I DLQRAD Sbjct: 189 LAKIASDLDKPRGFAALDPDEARIMLADKPVGFIFGVGPATQERLSQHGFRTIGDLQRAD 248 Query: 251 ENELMKQFASEGRRLWRLARGIDDRSVVADRGAKTISSETTFETDIRDFATLEKLLWKLS 310 E ELMKQFA+EGRRLWRLARGIDDR V+ADRGA+TISSETTFE+D+RDFATLE++LW+LS Sbjct: 249 EIELMKQFAAEGRRLWRLARGIDDRRVIADRGARTISSETTFESDVRDFATLERILWRLS 308 Query: 311 EKVSARLKTGELSGCTITLKLKTADFRQRTRSQSIQTPTQLAAKIFAVSREMLAKEIDGT 370 EKVS+RLKTG L+G TITLKLKTADFRQRTRSQSI PTQLA+KIFA SREMLAKEIDGT Sbjct: 309 EKVSSRLKTGGLAGSTITLKLKTADFRQRTRSQSISVPTQLASKIFATSREMLAKEIDGT 368 Query: 371 AFRLMGTGVSALRPGAQANDSDMLDRRSAHAERAMDNLRKKFGNAAVIRGIAYEGPGKN 429 AFRLMGTGVSALRPG+QA+D+DMLDRRSAHAERAMD+LRKKFG+AAVIRGIAY+GP K Sbjct: 369 AFRLMGTGVSALRPGSQADDTDMLDRRSAHAERAMDDLRKKFGSAAVIRGIAYDGPEKQ 427 >ref|YP_001240681.1| DNA polymerase IV [Bradyrhizobium sp. BTAi1] gb|ABQ36775.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein P [Bradyrhizobium sp. BTAi1] Length = 435 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/416 (85%), Positives = 381/416 (91%) Query: 11 PLSFCRDCLGDLDIKVKRCSHCGSPRLVRHRALPALALAHIDCDAFYATVEKRDNPEIAD 70 P FCRDCL DLD +RC+ CGSPRLVRH ALPAL LAHIDCDAFYATVEKRDNP +AD Sbjct: 16 PTCFCRDCLTDLDFGTRRCAACGSPRLVRHHALPALTLAHIDCDAFYATVEKRDNPAVAD 75 Query: 71 RPVIIGGGKRGVVSAACYIARTYGVRSAMPMFKALELCPDATVIPPDMAKYVRVGREVRQ 130 RPVIIGGGKRGVVSAACYIARTYGVRSAMPMFKALELCP A VIPPDMAKYVRVGREVRQ Sbjct: 76 RPVIIGGGKRGVVSAACYIARTYGVRSAMPMFKALELCPAAAVIPPDMAKYVRVGREVRQ 135 Query: 131 AMQALTPLVEPLSIDEAFLDLAGTQRVHGMIPAKVLAKFARDVERDIGITVSVGLSCNKF 190 AMQALTPLVEPLSIDEAFLDLAGT+RVHGMIPAKVLA+FAR+VE+ IGITVSVGLSCNKF Sbjct: 136 AMQALTPLVEPLSIDEAFLDLAGTERVHGMIPAKVLARFAREVEQTIGITVSVGLSCNKF 195 Query: 191 LAKIASDLDKPRGFAALDQDEAREMLASKPVGFIYGVGPATQEKLVQRGFRIIADLQRAD 250 LAKIASDLDKPRGFAALDQ++A +MLA KPVGFI+GVGPATQ++L Q GFR IA+LQRAD Sbjct: 196 LAKIASDLDKPRGFAALDQEQACQMLADKPVGFIFGVGPATQQRLAQHGFRSIAELQRAD 255 Query: 251 ENELMKQFASEGRRLWRLARGIDDRSVVADRGAKTISSETTFETDIRDFATLEKLLWKLS 310 E ELMKQF EGRRLWRLARGIDDR VVADRGAKTISSETTFETDIRD+ATLEKLLW+LS Sbjct: 256 EIELMKQFGGEGRRLWRLARGIDDRKVVADRGAKTISSETTFETDIRDYATLEKLLWRLS 315 Query: 311 EKVSARLKTGELSGCTITLKLKTADFRQRTRSQSIQTPTQLAAKIFAVSREMLAKEIDGT 370 EKVSARLK +L+G TITLKLKTADFRQRTRSQSI PTQLA KIFAV +EMLA+E DGT Sbjct: 316 EKVSARLKASQLAGATITLKLKTADFRQRTRSQSIAAPTQLAGKIFAVCKEMLARETDGT 375 Query: 371 AFRLMGTGVSALRPGAQANDSDMLDRRSAHAERAMDNLRKKFGNAAVIRGIAYEGP 426 AFRLMG GVSALRPG++A+D+DMLDRRSA AERAMD LRKKFG AA+IRGIAY GP Sbjct: 376 AFRLMGAGVSALRPGSEASDTDMLDRRSASAERAMDALRKKFGQAAIIRGIAYGGP 431 >ref|NP_771766.1| DNA polymerase IV [Bradyrhizobium japonicum USDA 110] dbj|BAC50391.1| DNA-damage inducible protein P [Bradyrhizobium japonicum USDA 110] Length = 430 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/423 (83%), Positives = 392/423 (92%) Query: 10 GPLSFCRDCLGDLDIKVKRCSHCGSPRLVRHRALPALALAHIDCDAFYATVEKRDNPEIA 69 GP FCRDCL DLD+ V+RCS CGSPRLVRHRAL +L +AHIDCDAFYATVEKRDNP+IA Sbjct: 8 GPRCFCRDCLVDLDMGVRRCSACGSPRLVRHRALSSLTIAHIDCDAFYATVEKRDNPDIA 67 Query: 70 DRPVIIGGGKRGVVSAACYIARTYGVRSAMPMFKALELCPDATVIPPDMAKYVRVGREVR 129 D+PVIIGGGKRGVVSAACYIARTYGVRSAMPMFKAL+ CP A VI PDMAKYVRVGREVR Sbjct: 68 DKPVIIGGGKRGVVSAACYIARTYGVRSAMPMFKALDACPHAIVIRPDMAKYVRVGREVR 127 Query: 130 QAMQALTPLVEPLSIDEAFLDLAGTQRVHGMIPAKVLAKFARDVERDIGITVSVGLSCNK 189 QAMQALTPLVEPLSIDEAFLDL+GT+RVHGMIPAKVLA+FAR++ERDIGI+VSVGLSCNK Sbjct: 128 QAMQALTPLVEPLSIDEAFLDLSGTERVHGMIPAKVLARFARNIERDIGISVSVGLSCNK 187 Query: 190 FLAKIASDLDKPRGFAALDQDEAREMLASKPVGFIYGVGPATQEKLVQRGFRIIADLQRA 249 FLAKIASDLDKPRGFAALDQ+EAR MLAS+PVGFI+GVGPATQE+LVQRGFRIIADLQ+A Sbjct: 188 FLAKIASDLDKPRGFAALDQEEARLMLASRPVGFIFGVGPATQERLVQRGFRIIADLQKA 247 Query: 250 DENELMKQFASEGRRLWRLARGIDDRSVVADRGAKTISSETTFETDIRDFATLEKLLWKL 309 DE E+M+QF S+GRRLWRLARGIDDR V DRGAKTISSETTFETDIRDFATLEK+LW+L Sbjct: 248 DEIEMMRQFPSDGRRLWRLARGIDDRRVEPDRGAKTISSETTFETDIRDFATLEKILWRL 307 Query: 310 SEKVSARLKTGELSGCTITLKLKTADFRQRTRSQSIQTPTQLAAKIFAVSREMLAKEIDG 369 EK S+RLK+ EL+G T+TLKLKTADFRQRTRSQSI PTQLAAKIF++ REMLAKEIDG Sbjct: 308 CEKTSSRLKSSELAGSTVTLKLKTADFRQRTRSQSIAAPTQLAAKIFSICREMLAKEIDG 367 Query: 370 TAFRLMGTGVSALRPGAQANDSDMLDRRSAHAERAMDNLRKKFGNAAVIRGIAYEGPGKN 429 TAFRLMG GVSALR G+ A+D+DMLDRR+AHAERA+D+LRKKFGN+AVIRGIAY+GP Sbjct: 368 TAFRLMGAGVSALREGSPADDTDMLDRRAAHAERAVDSLRKKFGNSAVIRGIAYDGPETG 427 Query: 430 AEE 432 +E Sbjct: 428 QQE 430 >ref|YP_001206480.1| DNA polymerase IV [Bradyrhizobium sp. ORS 278] emb|CAL78260.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein P [Bradyrhizobium sp. ORS 278] Length = 432 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/416 (84%), Positives = 382/416 (91%) Query: 11 PLSFCRDCLGDLDIKVKRCSHCGSPRLVRHRALPALALAHIDCDAFYATVEKRDNPEIAD 70 P FCRDCL DL +RCS CGSPRLVRHR+LP L LAHIDCDAFYATVEKRDNPE+AD Sbjct: 13 PTCFCRDCLSDLASTARRCSACGSPRLVRHRSLPGLTLAHIDCDAFYATVEKRDNPEVAD 72 Query: 71 RPVIIGGGKRGVVSAACYIARTYGVRSAMPMFKALELCPDATVIPPDMAKYVRVGREVRQ 130 RPVIIGGGKRGVVSAACYIARTYGVRSAMPMFKALELCP A VI PDMAKYVRVGREVRQ Sbjct: 73 RPVIIGGGKRGVVSAACYIARTYGVRSAMPMFKALELCPSAVVIRPDMAKYVRVGREVRQ 132 Query: 131 AMQALTPLVEPLSIDEAFLDLAGTQRVHGMIPAKVLAKFARDVERDIGITVSVGLSCNKF 190 AMQALTPLVEPLSIDEAFLDL+GT+RVHGMIPAKVLA+FAR+VE+ IGITVSVGLSCNKF Sbjct: 133 AMQALTPLVEPLSIDEAFLDLSGTERVHGMIPAKVLARFAREVEQIIGITVSVGLSCNKF 192 Query: 191 LAKIASDLDKPRGFAALDQDEAREMLASKPVGFIYGVGPATQEKLVQRGFRIIADLQRAD 250 LAKIASDLDKPRGFAALDQDEAR+MLA KPVGFI+GVGPA+Q++L Q GFR+I+DLQRAD Sbjct: 193 LAKIASDLDKPRGFAALDQDEARDMLADKPVGFIFGVGPASQQRLAQHGFRLISDLQRAD 252 Query: 251 ENELMKQFASEGRRLWRLARGIDDRSVVADRGAKTISSETTFETDIRDFATLEKLLWKLS 310 E ELMKQF EGRRLWRLARG+DDR VVADRGAKTISSETTF+TDIRD+ATLEKLLW+LS Sbjct: 253 EIELMKQFGGEGRRLWRLARGLDDRKVVADRGAKTISSETTFDTDIRDYATLEKLLWRLS 312 Query: 311 EKVSARLKTGELSGCTITLKLKTADFRQRTRSQSIQTPTQLAAKIFAVSREMLAKEIDGT 370 EKVSARLK +L+G TITLKLKT+DFRQRTRSQSI PTQLA KIFA+ +EMLA+E DGT Sbjct: 313 EKVSARLKASQLAGSTITLKLKTSDFRQRTRSQSIAAPTQLAGKIFAICKEMLARETDGT 372 Query: 371 AFRLMGTGVSALRPGAQANDSDMLDRRSAHAERAMDNLRKKFGNAAVIRGIAYEGP 426 AFRLMG GVSALRPG++A+D+DMLDRRSA AERAMD LRKKFG AAVIRGIAY GP Sbjct: 373 AFRLMGAGVSALRPGSEASDTDMLDRRSASAERAMDALRKKFGQAAVIRGIAYGGP 428 >ref|YP_318042.1| DNA polymerase IV [Nitrobacter winogradskyi Nb-255] gb|ABA04690.1| UMUC-like DNA-repair protein [Nitrobacter winogradskyi Nb-255] Length = 429 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/424 (79%), Positives = 378/424 (89%) Query: 5 AAASDGPLSFCRDCLGDLDIKVKRCSHCGSPRLVRHRALPALALAHIDCDAFYATVEKRD 64 A +SDGPL FCRDCL DL RCS CGSPRLVRHRALPALA+AHIDCDAFYATVEKRD Sbjct: 3 AGSSDGPLCFCRDCLADLSFTAPRCSACGSPRLVRHRALPALAIAHIDCDAFYATVEKRD 62 Query: 65 NPEIADRPVIIGGGKRGVVSAACYIARTYGVRSAMPMFKALELCPDATVIPPDMAKYVRV 124 NP +AD+PVI+GGG+RGVV AACY ARTYGV SAMPMFKAL LCP A V+PPDMAKYVR+ Sbjct: 63 NPALADKPVIVGGGRRGVVLAACYTARTYGVHSAMPMFKALALCPFAAVVPPDMAKYVRI 122 Query: 125 GREVRQAMQALTPLVEPLSIDEAFLDLAGTQRVHGMIPAKVLAKFARDVERDIGITVSVG 184 GR+VR AMQALTPLVEPLSIDEAFLDL+GT+RVHGMIPAKVLA+FA +ER +GITVSVG Sbjct: 123 GRDVRTAMQALTPLVEPLSIDEAFLDLSGTRRVHGMIPAKVLARFATGIERQLGITVSVG 182 Query: 185 LSCNKFLAKIASDLDKPRGFAALDQDEAREMLASKPVGFIYGVGPATQEKLVQRGFRIIA 244 LSCNKFLAKIASDLDKPRGFAALDQDEAR MLA KPVGFI+GVGPATQ++L +RGFR I Sbjct: 183 LSCNKFLAKIASDLDKPRGFAALDQDEARIMLADKPVGFIFGVGPATQQRLSERGFRAIG 242 Query: 245 DLQRADENELMKQFASEGRRLWRLARGIDDRSVVADRGAKTISSETTFETDIRDFATLEK 304 DLQ A E E+MKQF ++GRRLWRLA+GIDDR V+ADRGA+TISSETTFE+DIRDFATLE+ Sbjct: 243 DLQHAGEIEMMKQFPADGRRLWRLAQGIDDRRVIADRGARTISSETTFESDIRDFATLER 302 Query: 305 LLWKLSEKVSARLKTGELSGCTITLKLKTADFRQRTRSQSIQTPTQLAAKIFAVSREMLA 364 LLW+LSEKVS+RLK EL+G TITLKLKT DFRQRTRS+SI TQLA+KIFA REML Sbjct: 303 LLWRLSEKVSSRLKASELAGSTITLKLKTTDFRQRTRSRSISGSTQLASKIFATCREMLT 362 Query: 365 KEIDGTAFRLMGTGVSALRPGAQANDSDMLDRRSAHAERAMDNLRKKFGNAAVIRGIAYE 424 KE+DGTAFRLMGTGVSALR +QA ++DMLD RSAHAERAMD+LRKKFG+AAVIRG+ Y+ Sbjct: 363 KEVDGTAFRLMGTGVSALRAASQAGEADMLDLRSAHAERAMDDLRKKFGSAAVIRGLVYD 422 Query: 425 GPGK 428 GP K Sbjct: 423 GPEK 426