BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0137.0069.p         (151 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004157162.1| LysR family transcriptional regulator [Vario...   126   1e-27
gb|AAG01542.1|AF292094_3 PnbR [Pseudomonas putida]                    123   1e-26
gb|AAF01447.1|AF187880_2 PnbR [Pseudomonas sp. YH102]                 117   6e-25
gb|AAF01443.1|AF187879_1 PnbR [Ralstonia pickettii]                   115   2e-24
ref|YP_002495070.1| LysR family transcriptional regulator [Methy...   110   7e-23

>ref|YP_004157162.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gb|ADU39051.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 333

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/134 (50%), Positives = 87/134 (64%), Gaps = 2/134 (1%)

Query: 17  KLATLPLVVVSFGGEQEGAIGGFISERGLARRSEMYDRPALERALSDSDRPPRIAVSLPH 76
            LA  PLV VS GG++EGA+ G+I ERGLAR+SEM+DR ALE AL+   + PR  V++PH
Sbjct: 192 DLAEFPLVTVSLGGQEEGAVSGYIVERGLARQSEMFDRQALEDALAAIGQRPRYRVTVPH 251

Query: 77  FLALPALLVDSELAAIVPRPLARALEQAHAITTHGLPYSTTPVXL--LWHERVEDEPSHE 134
            LA+P LLVDS++ +IVP PLA+A      +    LPY    V L  +WH R E +P+H 
Sbjct: 252 SLAVPELLVDSDMLSIVPAPLAQAFASRGDVHAKPLPYEVANVSLRAIWHRRHEHDPAHV 311

Query: 135 WLHEVLRRATEELR 148
           WL E L +  E  R
Sbjct: 312 WLREQLAQIAESTR 325


>gb|AAG01542.1|AF292094_3 PnbR [Pseudomonas putida]
          Length = 348

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/134 (47%), Positives = 85/134 (63%), Gaps = 2/134 (1%)

Query: 18  LATLPLVVVSFGGEQEGAIGGFISERGLARRSEMYDRPALERALSDSDRPPRIAVSLPHF 77
           L   PL VVS GGE EG + G+I ERGLAR+++MYDR ALE+AL+++    R  + LPHF
Sbjct: 212 LVRYPLAVVSLGGEGEGMLSGYILERGLARQAQMYDRTALEQALNEAGLSMRRQIVLPHF 271

Query: 78  LALPALLVDSELAAIVPRPLARALEQAHAITTHGLPY--STTPVXLLWHERVEDEPSHEW 135
           LALP LL  SEL AIVP+PLAR   +        LPY  +   + L+WH   +++P+  W
Sbjct: 272 LALPMLLEGSELLAIVPQPLARTFARTLGFKIKPLPYPAARQQLDLIWHSSNDNDPAQLW 331

Query: 136 LHEVLRRATEELRR 149
           LHE +  A  E+ R
Sbjct: 332 LHEQISEAANEISR 345


>gb|AAF01447.1|AF187880_2 PnbR [Pseudomonas sp. YH102]
          Length = 332

 Score =  117 bits (293), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/155 (43%), Positives = 88/155 (56%), Gaps = 4/155 (2%)

Query: 1   VLIVGKKRKLGR--LDKAKLATLPLVVVSFGGEQEGAIGGFISERGLARRSEMYDRPALE 58
           V I      +G   L    LA  PL VVS GGE EG + GFI ERGLAR+++MYDR ALE
Sbjct: 177 VFICSGTHPIGNKALQLEDLARYPLAVVSLGGEGEGMLSGFILERGLARQAQMYDRNALE 236

Query: 59  RALSDSDRPPRIAVSLPHFLALPALLVDSELAAIVPRPLARALEQAHAITTHGLPY--ST 116
            AL+++    R  + LPHFLALP LL  SEL AIVP PLAR   +        LPY  + 
Sbjct: 237 NALTEAGLSVRRQIVLPHFLALPMLLEGSELLAIVPHPLARTFARTLGFMIKPLPYPVAR 296

Query: 117 TPVXLLWHERVEDEPSHEWLHEVLRRATEELRRGR 151
             + ++WH   +++ +  WL   +  A +E+ R R
Sbjct: 297 QQLDMIWHSSNDNDSAQRWLRGQISAAADEISRLR 331


>gb|AAF01443.1|AF187879_1 PnbR [Ralstonia pickettii]
          Length = 326

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/136 (44%), Positives = 86/136 (63%), Gaps = 2/136 (1%)

Query: 12  RLDKAKLATLPLVVVSFGGEQEGAIGGFISERGLARRSEMYDRPALERALSDSDRPPRIA 71
           +L    L   PLV +S GG++EGA+GGFI ERGLAR+SEM+DR ALE AL  S   PR+ 
Sbjct: 184 KLKIEDLTKYPLVTLSVGGQEEGAVGGFIVERGLARQSEMFDRRALEEALLASGEAPRLR 243

Query: 72  VSLPHFLALPALLVDSELAAIVPRPLARALEQAHAITTHGLPYS--TTPVXLLWHERVED 129
           +++PH LA+PALL ++++ +IVP  LA AL     +     PY   T  +  +WH R +D
Sbjct: 244 ITVPHALAIPALLRETDMLSIVPASLALALANRGGLARRAPPYQSRTEIMQAVWHGRDDD 303

Query: 130 EPSHEWLHEVLRRATE 145
           +  H WL E++ +  +
Sbjct: 304 DVGHAWLREMIAKTAQ 319


>ref|YP_002495070.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gb|ACL62578.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 341

 Score =  110 bits (275), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/136 (45%), Positives = 81/136 (59%), Gaps = 2/136 (1%)

Query: 11  GRLDKAKLATLPLVVVSFGGEQEGAIGGFISERGLARRSEMYDRPALERALSDSDRPPRI 70
           G  D   LA  PL+VV+ GG ++G   G +SERGL R++EM+DR AL RA   +   PR+
Sbjct: 192 GATDIRTLARDPLMVVTVGGTEDGLPDGRLSERGLTRQTEMFDRDALNRAFRAAGLVPRL 251

Query: 71  AVSLPHFLALPALLVDSELAAIVPRPLARALEQAHAITTHGLPYS--TTPVXLLWHERVE 128
           +V  PHFLA+P+LL DS   AIVP  LA   E A        P+   T  V ++WHER  
Sbjct: 252 SVLQPHFLAVPSLLADSRRVAIVPASLAHGFEAAGVARVSMPPWEPRTMAVQMVWHERWR 311

Query: 129 DEPSHEWLHEVLRRAT 144
            +P+H WL E L RA+
Sbjct: 312 QDPAHAWLREALFRAS 327