BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0137.0058.p (303 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004305741.1| Uncharacterized HTH-type transcriptional reg... 255 6e-66 ref|YP_001416276.1| LysR family transcriptional regulator [Xanth... 245 6e-63 ref|YP_003451217.1| uncharacterized HTH-type transcriptional reg... 244 1e-62 ref|YP_002154004.1| LysR family regulatory protein [Burkholderia... 238 7e-61 ref|YP_002547692.1| transcriptional regulator LysR family [Agrob... 238 1e-60 >ref|YP_004305741.1| Uncharacterized HTH-type transcriptional regulator [Polymorphum gilvum SL003B-26A1] gb|ADZ72435.1| Uncharacterized HTH-type transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 320 Score = 255 bits (652), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 152/293 (51%), Positives = 192/293 (65%), Gaps = 8/293 (2%) Query: 6 DWNDLRLVLAVAREGSLSGAARRLGVTHSTVFRRLGTIEDAIGTRLFERFRDGYAPTPAG 65 +W+DLR+ LAVAR GSLSGAAR LGV HSTVFRR+G E+A+G RLFER GY TPAG Sbjct: 7 NWDDLRVFLAVARAGSLSGAARTLGVNHSTVFRRIGAFEEALGVRLFERQPGGYLLTPAG 66 Query: 66 EIAAASAARLEDEVLALERKLAGRDLRPSGPVRITTTDTLG-AVLMRHLPAMRAAHPEIQ 124 E A R+E+E+ +L RK+ G+DLR SG VR TT D L +L RHL R A+P I+ Sbjct: 67 EELRDGALRVEEEIASLSRKVTGQDLRLSGAVRFTTIDMLAFGLLPRHLAGFRDAYPGIE 126 Query: 125 PEIIISNAMANLTRREAEIAIRPTPAPSELLVGRRVADIAHAVYGSRAYLARRSDRDLSV 184 E+++ N NL+RRE ++A+R AP+E LVGRRV +A AVY S Y ARR + DLS+ Sbjct: 127 VELVVGNVALNLSRREVDVALRVGNAPAETLVGRRVGRLAFAVYASADYRARRPEPDLSL 186 Query: 185 HDWIGLDDALAGTV--VAGWMRENLRSARITCRVDALPALRDAAAAGLGLALLPCYVGDL 242 H+WIG D V +AG++ E + R +++ A AA AG+GLA LPC + DL Sbjct: 187 HNWIGFDSEHEALVRRMAGFLPE----VKPVLRTNSVAAALSAAKAGMGLAPLPCGLADL 242 Query: 243 APTLRRLTPKALAEPRSALWLLTHDDLKRTARIRATLDFLASALTSERALFEG 295 L R+ P E LWLLTH+DL++TARIRA LDFLA AL E L EG Sbjct: 243 ETDLVRIAPLP-DEFTLDLWLLTHEDLRQTARIRAFLDFLAEALAKEAPLLEG 294 >ref|YP_001416276.1| LysR family transcriptional regulator [Xanthobacter autotrophicus Py2] gb|ABS66619.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus Py2] Length = 308 Score = 245 bits (626), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 135/296 (45%), Positives = 190/296 (64%), Gaps = 6/296 (2%) Query: 7 WNDLRLVLAVAREGSLSGAARRLGVTHSTVFRRLGTIEDAIGTRLFERFRDGYAPTPAGE 66 W+D RLV A+A+ SL+GAA +LGV HSTVFRRLG +E+ +G RLFER R GY PT GE Sbjct: 4 WDDFRLVQAIAQSSSLAGAAEQLGVNHSTVFRRLGALEEQLGARLFERARSGYVPTAIGE 63 Query: 67 IAAASAARLEDEVLALERKLAGRDLRPSGPVRITTTDTLGA-VLMRHLPAMRAAHPEIQP 125 A R+ DEVL++ER++ G+DLRPSG +R+TT DTL +L + A+PEI+ Sbjct: 64 EMVRLAERMADEVLSVERRITGQDLRPSGELRVTTNDTLLVHMLTPVFASFLKAYPEIRL 123 Query: 126 EIIISNAMANLTRREAEIAIRPTPAPSELLVGRRVADIAHAVYGSRAYLARRSD---RDL 182 +++ISN +L++R+A++AIR + P + LVGRR+A IA A+Y +RA LA + D Sbjct: 124 DVVISNQSLSLSKRDADVAIRASDRPGDTLVGRRMASIAWAIY-ARADLAPATPLGAGDF 182 Query: 183 SVHDWIGLDDALAGTVVAGWMRENLRSARITCRVDALPALRDAAAAGLGLALLPCYVGDL 242 +DWIG D L G A W+RE + R+ RV+ + L +AAA G+GLA+LPC++ + Sbjct: 183 RRYDWIGFSDNLGGIKPAKWLRERVDEDRLVYRVNTVLGLAEAAAEGIGLAVLPCFIAAV 242 Query: 243 APTLRRLTPKALAEPRSALWLLTHDDLKRTARIRATLDFLASALTSERALFEGKRA 298 P L ++ P E S LWLLTH D+K TAR+R ++ + R EG+ A Sbjct: 243 TPGLVQIVPPQ-PEMESGLWLLTHPDIKATARVRTFMEHAGREIGKLRGRIEGREA 297 >ref|YP_003451217.1| uncharacterized HTH-type transcriptional regulator [Azospirillum sp. B510] dbj|BAI74673.1| uncharacterized HTH-type transcriptional regulator [Azospirillum sp. B510] Length = 314 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 139/301 (46%), Positives = 193/301 (64%), Gaps = 3/301 (0%) Query: 1 MNSPLDWNDLRLVLAVAREGSLSGAARRLGVTHSTVFRRLGTIEDAIGTRLFERFRDGYA 60 M S +W+DLR +LAVAR GSLS AAR LGV HSTV RR+ +E A+G RLF++ GY Sbjct: 1 MISGSNWDDLRYLLAVARHGSLSAAARALGVNHSTVLRRVTALEQAMGARLFDKLPGGYV 60 Query: 61 PTPAGEIAAASAARLEDEVLALERKLAGRDLRPSGPVRITTTDTLG-AVLMRHLPAMRAA 119 T AG+ A ++E+++ A R L+G D R SG +R+TT D L +L RH+ A R Sbjct: 61 LTTAGDEMQRVAQKMEEDLAAANRLLSGSDTRISGSLRVTTLDILTLYILPRHIAAFRRR 120 Query: 120 HPEIQPEIIISNAMANLTRREAEIAIRPTPAPSELLVGRRVADIAHAVYGSRAYLARRSD 179 HP+++ +++ + A +LTRREA++AIR T +P E LVGR V+ +A A YG+ AYL R D Sbjct: 121 HPDLRIDLVAAEASLSLTRREADVAIRATTSPPENLVGRAVSGLAFAAYGAVAYLERTGD 180 Query: 180 -RDLSVHDWIGLDDALAGTVVAGWMRENLRSARITCRVDALPALRDAAAAGLGLALLPCY 238 L H W+GLD++ A T +A W + +A + RV+++ +A AG+GL LLPC Sbjct: 181 IGGLERHPWVGLDESFAHTNLAHWTERTVPAASVRYRVNSVAGAVEAVRAGIGLGLLPCG 240 Query: 239 VGDLAPTLRRLTPKALAEPRSALWLLTHDDLKRTARIRATLDFLASALTSERALFEGKRA 298 V D P RR+ + E + LWLLTH+DL+ R+RA LDF+A ALT +R L EG+R Sbjct: 241 VVDGDPAFRRIG-DPIPEADTKLWLLTHEDLRHMGRVRAFLDFMAEALTRDRDLLEGRRP 299 Query: 299 G 299 G Sbjct: 300 G 300 >ref|YP_002154004.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] emb|CAR57554.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 295 Score = 238 bits (608), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 149/292 (51%), Positives = 196/292 (67%), Gaps = 7/292 (2%) Query: 5 LDWNDLRLVLAVAREGSLSGAARRLGVTHSTVFRRLGTIEDAIGTRLFERFRDGYAPTPA 64 L W+DLRLVLAVA+ GSL+GAARRLG++H+TVFRRL IE +G +LFER R GYAPTPA Sbjct: 6 LSWDDLRLVLAVAQAGSLAGAARRLGISHATVFRRLAAIEAELGVKLFERTRAGYAPTPA 65 Query: 65 GEIAAASAARLEDEVLALERKLAGRDLRPSGPVRITTTDT-LGAVLMRHLPAMRAAHPEI 123 GE AAA+A R++DEV +ER++AGRD+RPSG VR+TTTDT L +L A R A PEI Sbjct: 66 GEDAAAAAERIQDEVHGVERRVAGRDVRPSGTVRVTTTDTLLSGLLSPVFAAFRHACPEI 125 Query: 124 QPEIIISNAMANLTRREAEIAIRPTPAPSELLVGRRVADIAHAVYGSRAYLARRSDRDLS 183 E+ +SNA+ +L++REA++AIRP+ +P E+L+GRRV IA AVY + + R D Sbjct: 126 TLEVSVSNAVFDLSKREADVAIRPSSSPPEVLIGRRVGTIAQAVYAAPGWRERADDL--- 182 Query: 184 VHDWIGLDDALAGTVVAGWMRENLRSARITCRVDALPALRDAAAAGLGLALLPCYVGDLA 243 W+G D + + WM + AR RVD L L AA AG+G A+LPCY+ D Sbjct: 183 --AWVGPDRRMGYRPLERWMHAHGADARCGYRVDTLLGLFAAARAGIGAAVLPCYLADDE 240 Query: 244 PTLRRLTPKALAEPRSALWLLTHDDLKRTARIRATLDFLASALTSERALFEG 295 L RL + + E + LWLLTH DL+ TARIRA F+A+++ + A G Sbjct: 241 RDLVRLGGR-IDELATDLWLLTHPDLRDTARIRAFSSFVATSIEALHARLAG 291 >ref|YP_002547692.1| transcriptional regulator LysR family [Agrobacterium vitis S4] gb|ACM38976.1| transcriptional regulator LysR family [Agrobacterium vitis S4] Length = 312 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 133/299 (44%), Positives = 193/299 (64%), Gaps = 5/299 (1%) Query: 5 LDWNDLRLVLAVAREGSLSGAARRLGVTHSTVFRRLGTIEDAIGTRLFERFRDGYAPTPA 64 L W+DLRLV A+A+ ++GAA LG+ HSTVFRRLG +E+A+G LFER R GYA TP Sbjct: 7 LAWDDLRLVKAIAQALGMAGAAATLGIDHSTVFRRLGALEEALGVPLFERRRSGYALTPT 66 Query: 65 GEIAAASAARLEDEVLALERKLAGRDLRPSGPVRITTTDTLGAVLMRHLPA-MRAAHPEI 123 GE A +A R+E EV LER+L GR++ P+G +R+TT D+L L+ L A + A+P+I Sbjct: 67 GEEAVRTAERIEAEVAQLERRLQGREIAPAGEIRVTTADSLLVYLLTPLFARFQQAYPDI 126 Query: 124 QPEIIISNAMANLTRREAEIAIRPTPAPSELLVGRRVADIAHAVYGSRAYLARRS---DR 180 Q +++I N NL+RR+A+IAIR T P ++LVGRR+ IA A+YG A S Sbjct: 127 QLDVVIGNNALNLSRRDADIAIRATDNPPDMLVGRRIGLIAWALYGRGQDFAAASAPKPA 186 Query: 181 DLSVHDWIGLDDALAGTVVAGWMRENLRSARITCRVDALPALRDAAAAGLGLALLPCYVG 240 +L+ W L + +AG V ++ L ++ R +++ AL DA AG+G+ +PC++G Sbjct: 187 ELNAAHWACLGEDMAGLKVVKAAKQQLAPKQLRYRANSVLALADAVEAGIGIGHIPCFIG 246 Query: 241 DLAPTLRRLTPKALAEPRSALWLLTHDDLKRTARIRATLDFLASALTSERALFEGKRAG 299 D+ P L RL+P + + ++LWLLTH DL+ + RIR +DF+A+ L R L EG+ G Sbjct: 247 DVRPALVRLSPT-IPDYSASLWLLTHQDLRHSPRIRVFMDFIAAQLIPLRPLIEGELPG 304