BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0137.0057.p (302 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_106302.1| transcriptional regulator [Mesorhizobium loti M... 416 e-114 gb|EGP55533.1| LysR family transcriptional regulator [Agrobacter... 397 e-108 ref|NP_356654.1| LysR family transcriptional regulator [Agrobact... 396 e-108 ref|YP_004444163.1| transcriptional regulator, LysR family [Agro... 392 e-107 ref|YP_002976028.1| LysR family transcriptional regulator [Rhizo... 383 e-104 >ref|NP_106302.1| transcriptional regulator [Mesorhizobium loti MAFF303099] dbj|BAB52088.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 302 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 209/300 (69%), Positives = 251/300 (83%), Gaps = 1/300 (0%) Query: 3 TLDVDAVKTFVTIADLKSFTRAAETLGTTQGAISVKLKRLERQLGHRLIERTPRLVRLSA 62 TLDVDAVK FV +A+L+SFTRAAE LG+TQGAISVKLKRLE ++G RLIERTPRLVRLSA Sbjct: 2 TLDVDAVKAFVAVAELRSFTRAAEALGSTQGAISVKLKRLEDRMGQRLIERTPRLVRLSA 61 Query: 63 QGAAFLAPAQELLTAHDRAIAALSPVRPRRFSLGIATHVGGAEVPTLLARLHAHDPALTI 122 +GA FL PA+ELL AHDRA+A+L+ VR R F LGIATHVGGAEVPTLLARL+AHDPALTI Sbjct: 62 RGAVFLDPARELLAAHDRAVASLAAVR-RHFRLGIATHVGGAEVPTLLARLNAHDPALTI 120 Query: 123 EVRLEDSRDLLDAFDRGEIDAAIIRREDDRRDGEMLATDHYGWFAMPDFVHRAGEPLRLA 182 EVRL+D+R+L+ AFDRG++DAAI+RREDDRRDGE+LA +H+GW+A PDFV+RAGEPLRLA Sbjct: 121 EVRLDDTRELIAAFDRGDLDAAIVRREDDRRDGEVLAPEHFGWYATPDFVYRAGEPLRLA 180 Query: 183 ASSPSCGVLNIATRALAAAGIPWTESFLGCGSFAVADAVAAGLATSVFSRRLAPAGTIEV 242 AS+PSC + ++ T L A GIPWT+ FLGCGSFAVA+AV+AGLA FS RL P GT+EV Sbjct: 181 ASAPSCSIRDVITGTLDAVGIPWTQVFLGCGSFAVAEAVSAGLAVGAFSSRLVPPGTMEV 240 Query: 243 SRRLGLPALPPSEIMLLSALSDAKSRAVLKTIVGAFREHHRMPASRAAEEIHTVTEVVGS 302 SR+ GLP LP SEIMLLS LSDA+SR L+T+ AFREH + + A+ +++V S Sbjct: 241 SRKFGLPPLPASEIMLLSTLSDAQSRDALRTLTMAFREHRPLAGANGAKPRFRNSQMVDS 300 >gb|EGP55533.1| LysR family transcriptional regulator [Agrobacterium tumefaciens F2] Length = 284 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 203/281 (72%), Positives = 232/281 (82%), Gaps = 1/281 (0%) Query: 1 MTTLDVDAVKTFVTIADLKSFTRAAETLGTTQGAISVKLKRLERQLGHRLIERTPRLVRL 60 MTTLDVDAV+ FVTIADL+SFTRAAETLGTTQGAISV+LKRLE +LG RL+ERTPR VRL Sbjct: 1 MTTLDVDAVQAFVTIADLQSFTRAAETLGTTQGAISVRLKRLEDRLGQRLLERTPRSVRL 60 Query: 61 SAQGAAFLAPAQELLTAHDRAIAALSPVRPRRFSLGIATHVGGAEVPTLLARLHAHDPAL 120 SAQGA FLAPA+E L AHDRA+A L R RRF LGI+ HV G EVPTLLARL+AHDP L Sbjct: 61 SAQGAVFLAPAREFLAAHDRAMAGLFSTR-RRFGLGISAHVAGPEVPTLLARLNAHDPGL 119 Query: 121 TIEVRLEDSRDLLDAFDRGEIDAAIIRREDDRRDGEMLATDHYGWFAMPDFVHRAGEPLR 180 TIEVR+++SR LLDAFDRGEIDAAIIRREDDRRDGE+L +H+GWFA P F HR GEPLR Sbjct: 120 TIEVRMDNSRTLLDAFDRGEIDAAIIRREDDRRDGEVLGPEHFGWFAAPQFEHRQGEPLR 179 Query: 181 LAASSPSCGVLNIATRALAAAGIPWTESFLGCGSFAVADAVAAGLATSVFSRRLAPAGTI 240 LAA SP+CGV +IA RAL +A I WTE FLG S V AV+AGLA S FS RLAP GT+ Sbjct: 180 LAALSPACGVRDIAARALDSAAIAWTEVFLGGTSSMVTAAVSAGLAISAFSCRLAPPGTV 239 Query: 241 EVSRRLGLPALPPSEIMLLSALSDAKSRAVLKTIVGAFREH 281 EVS+R GLPALP +EI++ S L+D++SR L+T+ AFREH Sbjct: 240 EVSQRFGLPALPSTEIIMFSTLTDSRSREALRTLAAAFREH 280 >ref|NP_356654.1| LysR family transcriptional regulator [Agrobacterium tumefaciens str. C58] ref|ZP_08529270.1| LysR family transcriptional regulator [Agrobacterium sp. ATCC 31749] gb|AAK89439.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58] gb|EGL63871.1| LysR family transcriptional regulator [Agrobacterium sp. ATCC 31749] Length = 293 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 206/287 (71%), Positives = 232/287 (80%), Gaps = 1/287 (0%) Query: 1 MTTLDVDAVKTFVTIADLKSFTRAAETLGTTQGAISVKLKRLERQLGHRLIERTPRLVRL 60 M+TLDV+AV+ FVTIADL+SFTRAAETLGTTQGAISVKLKRLE +LG RL+ERTPR VRL Sbjct: 4 MSTLDVEAVEAFVTIADLQSFTRAAETLGTTQGAISVKLKRLEDRLGQRLLERTPRSVRL 63 Query: 61 SAQGAAFLAPAQELLTAHDRAIAALSPVRPRRFSLGIATHVGGAEVPTLLARLHAHDPAL 120 SAQGA FLAPA+E L AHDRA+A LS R RRF LGIA HV G EVPTLLARL+ HDP L Sbjct: 64 SAQGAVFLAPAREFLAAHDRALAGLSSPR-RRFGLGIAAHVAGPEVPTLLARLNDHDPGL 122 Query: 121 TIEVRLEDSRDLLDAFDRGEIDAAIIRREDDRRDGEMLATDHYGWFAMPDFVHRAGEPLR 180 TIEVR++ SR LLDAFDRGEIDAAIIRREDDRRDGE+L +H+GW+A P F HR GEPLR Sbjct: 123 TIEVRMDHSRSLLDAFDRGEIDAAIIRREDDRRDGEVLGPEHFGWYATPQFEHRQGEPLR 182 Query: 181 LAASSPSCGVLNIATRALAAAGIPWTESFLGCGSFAVADAVAAGLATSVFSRRLAPAGTI 240 LAA SP+CGV NIAT AL AA I WTE FLG S V AV+AGLA S FS RLAP GT+ Sbjct: 183 LAALSPACGVRNIATHALDAAAIAWTEVFLGGTSSMVTAAVSAGLAISAFSCRLAPPGTV 242 Query: 241 EVSRRLGLPALPPSEIMLLSALSDAKSRAVLKTIVGAFREHHRMPAS 287 EVS+R GLP LP SEI++ S L+D++SR L+T+ AFREH P S Sbjct: 243 EVSQRFGLPPLPSSEIIMFSTLTDSRSREALRTLAAAFREHRPGPIS 289 >ref|YP_004444163.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] gb|ADY67072.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] Length = 296 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 202/281 (71%), Positives = 229/281 (81%), Gaps = 1/281 (0%) Query: 1 MTTLDVDAVKTFVTIADLKSFTRAAETLGTTQGAISVKLKRLERQLGHRLIERTPRLVRL 60 +TTLDVDAV+ FVTIADL+SFTRAAETLGTTQGAISVKLKRLE +LG RL+ERTPR VRL Sbjct: 15 VTTLDVDAVQAFVTIADLQSFTRAAETLGTTQGAISVKLKRLEDRLGQRLLERTPRSVRL 74 Query: 61 SAQGAAFLAPAQELLTAHDRAIAALSPVRPRRFSLGIATHVGGAEVPTLLARLHAHDPAL 120 SAQGA FL PA+E L AHDRA+A L R RRF LGIA HV G EVPTLLARL+AHDP L Sbjct: 75 SAQGAVFLTPAREFLAAHDRAMAGLFSTR-RRFGLGIAAHVAGPEVPTLLARLNAHDPGL 133 Query: 121 TIEVRLEDSRDLLDAFDRGEIDAAIIRREDDRRDGEMLATDHYGWFAMPDFVHRAGEPLR 180 TIEVR+++SR LLDAFDRGEIDAAIIRREDDRRDGE+L +H+GWFA P F HR GEPLR Sbjct: 134 TIEVRMDNSRTLLDAFDRGEIDAAIIRREDDRRDGEVLGPEHFGWFAAPQFEHRQGEPLR 193 Query: 181 LAASSPSCGVLNIATRALAAAGIPWTESFLGCGSFAVADAVAAGLATSVFSRRLAPAGTI 240 LAA SP+CGV +IA RAL +A I WTE FLG S V AV+AGLA S FS RLAP GTI Sbjct: 194 LAALSPACGVRDIAARALDSAAIAWTEVFLGGTSSMVTAAVSAGLAISAFSCRLAPPGTI 253 Query: 241 EVSRRLGLPALPPSEIMLLSALSDAKSRAVLKTIVGAFREH 281 EVS+R LP LP +EI++ S L+D++SR L+T+ AFREH Sbjct: 254 EVSQRFSLPPLPSTEIVMFSTLTDSRSREALRTLAAAFREH 294 >ref|YP_002976028.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS56489.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 283 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 195/278 (70%), Positives = 226/278 (81%), Gaps = 1/278 (0%) Query: 4 LDVDAVKTFVTIADLKSFTRAAETLGTTQGAISVKLKRLERQLGHRLIERTPRLVRLSAQ 63 LDVDAV+ FVTIA+L+SFTRAAE LG+TQ AISVKLKRLE +LGHRLIERTPRLVRLSAQ Sbjct: 2 LDVDAVRAFVTIAELQSFTRAAEALGSTQAAISVKLKRLEERLGHRLIERTPRLVRLSAQ 61 Query: 64 GAAFLAPAQELLTAHDRAIAALSPVRPRRFSLGIATHVGGAEVPTLLARLHAHDPALTIE 123 GA FL A++ + AHDRA+AALS R F+LGIA HV G EVPT+LARL AHDP LTIE Sbjct: 62 GAVFLQSARDFIGAHDRAVAALSST-SRHFTLGIAAHVAGPEVPTILARLSAHDPGLTIE 120 Query: 124 VRLEDSRDLLDAFDRGEIDAAIIRREDDRRDGEMLATDHYGWFAMPDFVHRAGEPLRLAA 183 VRL++SR LLDAFDRGE+DAAIIRRE+DRRDGE+L +H+GWFA P F +R GEPLRLAA Sbjct: 121 VRLDNSRVLLDAFDRGELDAAIIRREEDRRDGEVLGPEHFGWFAAPQFEYRRGEPLRLAA 180 Query: 184 SSPSCGVLNIATRALAAAGIPWTESFLGCGSFAVADAVAAGLATSVFSRRLAPAGTIEVS 243 SPSCGV NIAT AL AGI W E FLG GS + AV+AGLA + FS RLAP G++EVS Sbjct: 181 LSPSCGVHNIATHALDGAGIAWNEVFLGGGSLVMTAAVSAGLAVAAFSHRLAPVGSMEVS 240 Query: 244 RRLGLPALPPSEIMLLSALSDAKSRAVLKTIVGAFREH 281 +R LP LP SEI+L S L+DA+SR+ L+T+ AFREH Sbjct: 241 QRFSLPPLPSSEIVLHSTLTDARSRSALRTLAAAFREH 278