BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0137.0050.p (248 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770346.1| two-component response regulator [Bradyrhizobiu... 349 2e-94 ref|YP_001242045.1| two component transcriptional regulator [Bra... 316 2e-84 ref|YP_001207589.1| OmpR family two component response transcrip... 315 3e-84 ref|YP_485580.1| two component transcriptional regulator [Rhodop... 307 9e-82 ref|YP_004108130.1| winged helix family two component transcript... 298 3e-79 >ref|NP_770346.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC48971.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 273 Score = 349 bits (896), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 175/241 (72%), Positives = 205/241 (85%), Gaps = 1/241 (0%) Query: 8 IMLANTPKILIVEDDLQTRDLIARYLRDQSCLVATASNGREMDRYLAGHSLDLVVLDLML 67 I +T ILIVEDD +TR+L+ARYLR+ S V A+NGREMDRY++ + +DL+VLDLML Sbjct: 34 IHAMSTQSILIVEDDQETRNLVARYLRENSFNVGMAANGREMDRYISQNRVDLIVLDLML 93 Query: 68 PGEDGLTLCRRLRGDSTIPIIMLTAKGEDLDRILGLEMGADDYLAKPFNPRELLARINAV 127 PGEDGL+LCRRLR D+T PII+LTAKG+D+DRILGLEMGADDYL KPFNPRELLARINAV Sbjct: 94 PGEDGLSLCRRLRVDTTTPIIILTAKGDDVDRILGLEMGADDYLPKPFNPRELLARINAV 153 Query: 128 LRRQAQAGLAGRSGQSAARLRFQDWTIDLRLRELRDPDGAQVPLTSAEFDLLQVFCERPG 187 LRRQ G AG + +++ARLRF+ W ID R+RELRDP+GAQVPLTSAEFDLLQ FCER G Sbjct: 154 LRRQL-GGSAGPAAKTSARLRFEGWIIDSRMRELRDPEGAQVPLTSAEFDLLQSFCERHG 212 Query: 188 RILTRDGLLTMTRSRPASPFGRSIDVLVSRLRRKLDTSEGSSVIRTVRTGGYIFTPHVED 247 RIL+RD LL MTR RP FGRSIDVLVSRLR KLD +EG+S+I+TVRTGGYIFTP V++ Sbjct: 213 RILSRDTLLNMTRGRPGGAFGRSIDVLVSRLRGKLDRTEGTSMIKTVRTGGYIFTPRVDE 272 Query: 248 A 248 A Sbjct: 273 A 273 >ref|YP_001242045.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ38139.1| two component transcriptional regulator, winged helix family [Bradyrhizobium sp. BTAi1] Length = 246 Score = 316 bits (809), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 155/239 (64%), Positives = 193/239 (80%), Gaps = 2/239 (0%) Query: 9 MLANTPKILIVEDDLQTRDLIARYLRDQSCLVATASNGREMDRYLAGHSLDLVVLDLMLP 68 M P IL+VEDD +TR LIA+YLR+ SC V TA++GREM R + H +DL++LD+MLP Sbjct: 1 MAQTQPHILVVEDDRETRTLIAKYLRNNSCNVTTATDGREMTRIMGDHRIDLLILDVMLP 60 Query: 69 GEDGLTLCRRLRGDSTIPIIMLTAKGEDLDRILGLEMGADDYLAKPFNPRELLARINAVL 128 GEDGLTLCR+LR +S +PIIMLTA+GED+DRILGLEMGADDYL KPFNPRELLARINAVL Sbjct: 61 GEDGLTLCRKLRAESQVPIIMLTARGEDVDRILGLEMGADDYLPKPFNPRELLARINAVL 120 Query: 129 RRQAQAGLAGRSGQSAARLRFQDWTIDLRLRELRDPDGAQVPLTSAEFDLLQVFCERPGR 188 RRQA A + + + A L F W ID RLRELR+P+GA+V +TSAEFDLL+ FCERPGR Sbjct: 121 RRQA-AAMTASATEGATALSFLGWRIDFRLRELRNPEGARVAMTSAEFDLLRTFCERPGR 179 Query: 189 ILTRDGLLTMTRSRPASPFGRSIDVLVSRLRRKLDTS-EGSSVIRTVRTGGYIFTPHVE 246 +L+RD LL +T+ R A F RSIDVLVSR+RRK++ + +++I+TVR+GGY+FTP VE Sbjct: 180 VLSRDSLLDLTQGRSAGSFERSIDVLVSRIRRKIEPDPQEATMIKTVRSGGYMFTPVVE 238 >ref|YP_001207589.1| OmpR family two component response transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL79372.1| putative two component response transcriptional regulator (OmpR family) [Bradyrhizobium sp. ORS 278] Length = 246 Score = 315 bits (808), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 154/239 (64%), Positives = 193/239 (80%), Gaps = 2/239 (0%) Query: 9 MLANTPKILIVEDDLQTRDLIARYLRDQSCLVATASNGREMDRYLAGHSLDLVVLDLMLP 68 M P IL+VEDD +TR LIA+YLR+ +C V TA++GREM R + H +DL++LD+MLP Sbjct: 1 MAQTQPHILVVEDDRETRTLIAKYLRNNACNVTTATDGREMTRIMGDHRIDLLILDVMLP 60 Query: 69 GEDGLTLCRRLRGDSTIPIIMLTAKGEDLDRILGLEMGADDYLAKPFNPRELLARINAVL 128 GEDGLTLCR+LR +S +PIIMLTA+GED+DRILGLEMGADDYL KPFNPRELLARINAVL Sbjct: 61 GEDGLTLCRKLRAESQVPIIMLTARGEDVDRILGLEMGADDYLPKPFNPRELLARINAVL 120 Query: 129 RRQAQAGLAGRSGQSAARLRFQDWTIDLRLRELRDPDGAQVPLTSAEFDLLQVFCERPGR 188 RRQA A + + + A L F W ID RLRELR+P+GA+V +TSAEFDLL+ FCERPGR Sbjct: 121 RRQA-AAITASATEGATALSFLGWKIDFRLRELRNPEGARVAMTSAEFDLLRTFCERPGR 179 Query: 189 ILTRDGLLTMTRSRPASPFGRSIDVLVSRLRRKLDTS-EGSSVIRTVRTGGYIFTPHVE 246 +L+RD LL +T+ R A F RSIDVLVSR+RRK++ + +++I+TVR+GGY+FTP VE Sbjct: 180 VLSRDSLLDLTQGRSAGSFERSIDVLVSRIRRKIEPDPQEATMIKTVRSGGYMFTPVVE 238 >ref|YP_485580.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gb|ABD06669.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris HaA2] Length = 240 Score = 307 bits (787), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 157/239 (65%), Positives = 187/239 (78%), Gaps = 2/239 (0%) Query: 9 MLANTPKILIVEDDLQTRDLIARYLRDQSCLVATASNGREMDRYLAGHSLDLVVLDLMLP 68 M P IL+VEDD +TR LIA+YLR+ C V TA +GREMD L+ +DLVVLD+MLP Sbjct: 1 MSTAPPHILVVEDDRETRALIAKYLRNNECHVVTAQDGREMDSRLSDQRVDLVVLDVMLP 60 Query: 69 GEDGLTLCRRLRGDSTIPIIMLTAKGEDLDRILGLEMGADDYLAKPFNPRELLARINAVL 128 GEDGL+LCRR+R S +PIIMLTA+GED+DRILGLEMGADDYLAKPFNPRELLARI +VL Sbjct: 61 GEDGLSLCRRVRASSPLPIIMLTARGEDVDRILGLEMGADDYLAKPFNPRELLARIRSVL 120 Query: 129 RRQAQAGLAGRSGQSAARLRFQDWTIDLRLRELRDPDGAQVPLTSAEFDLLQVFCERPGR 188 RRQ+ A A + + A L F W ID RLRELR+PDGA V +TSAEFDLLQ FCERPGR Sbjct: 121 RRQSLAQTASATSGATA-LTFLGWRIDFRLRELRNPDGALVAMTSAEFDLLQAFCERPGR 179 Query: 189 ILTRDGLLTMTRSRPASPFGRSIDVLVSRLRRKLDTSEGS-SVIRTVRTGGYIFTPHVE 246 +L+R+ LL +T R A F RSIDVLVSR+RRK++ S S+I+TVR+GGY+FTP VE Sbjct: 180 VLSREALLDLTHGRNAGSFERSIDVLVSRIRRKIEPDPQSVSIIKTVRSGGYMFTPAVE 238 >ref|YP_004108130.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gb|ADU43397.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 240 Score = 298 bits (764), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 148/239 (61%), Positives = 187/239 (78%), Gaps = 2/239 (0%) Query: 9 MLANTPKILIVEDDLQTRDLIARYLRDQSCLVATASNGREMDRYLAGHSLDLVVLDLMLP 68 M + P IL+VEDD +TR LIA+YLR +C VATA++GREM+R++A H +DLVVLD+MLP Sbjct: 1 MSSTPPSILVVEDDRETRALIAKYLRSNNCNVATAADGREMERWIADHRVDLVVLDVMLP 60 Query: 69 GEDGLTLCRRLRGDSTIPIIMLTAKGEDLDRILGLEMGADDYLAKPFNPRELLARINAVL 128 GEDGL+LCR++R +S +PIIMLTA+G+D+DRILGLEMGADDYL KPFNPRELLARI +VL Sbjct: 61 GEDGLSLCRKIRANSQLPIIMLTARGDDVDRILGLEMGADDYLPKPFNPRELLARIRSVL 120 Query: 129 RRQAQAGLAGRSGQSAARLRFQDWTIDLRLRELRDPDGAQVPLTSAEFDLLQVFCERPGR 188 RRQA A + + A L F W +D R RELR+PDGA V +TSAEFDLLQ CER GR Sbjct: 121 RRQASA-VTASAAPGATTLGFLGWRMDCRRRELRNPDGALVAMTSAEFDLLQALCERAGR 179 Query: 189 ILTRDGLLTMTRSRPASPFGRSIDVLVSRLRRKLDTS-EGSSVIRTVRTGGYIFTPHVE 246 +L+R+ LL +T R F RSIDVL+SR+RRK++ +++I+TVR GGY+FTP VE Sbjct: 180 VLSREALLDLTHGRSVGAFERSIDVLISRIRRKIEPDPREATLIKTVRAGGYVFTPMVE 238