BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0137.0034.p (364 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001632750.1| AraC family transcriptional regulator [Borde... 461 e-128 ref|ZP_06841431.1| transcriptional regulator, AraC family [Burkh... 446 e-123 ref|YP_552343.1| transcriptional regulator [Burkholderia xenovor... 446 e-123 ref|YP_004534356.1| AraC family transcriptional regulator [Novos... 441 e-122 ref|YP_001890638.1| AraC family transcriptional regulator [Burkh... 436 e-120 >ref|YP_001632750.1| AraC family transcriptional regulator [Bordetella petrii DSM 12804] emb|CAP44482.1| transcriptional regulator, AraC-family [Bordetella petrii] Length = 327 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 229/320 (71%), Positives = 259/320 (80%) Query: 44 MAVQRVAIAIHEGVQALDVAGPVDVFAETNGFVPAGDGYETVLVGAGCEPLRASNGMKIS 103 M + VA+AIH+GVQALDVAGPVDVF E NG++P D YETVLV A P RASN M+I Sbjct: 2 MPSRTVALAIHDGVQALDVAGPVDVFHEANGYLPPQDRYETVLVAADRGPFRASNRMQIL 61 Query: 104 ADLSFAEAQQKFDILLVAGGPALPDAAPDPELTQWLRGAPARAELYGSICTGAFALGHAG 163 ADLSF EA FDILLVAGGPALPDA PD WLR A RA +YG+ICTGAF LGHAG Sbjct: 62 ADLSFEEAGAAFDILLVAGGPALPDAKPDARFVAWLRAATQRAGIYGAICTGAFILGHAG 121 Query: 164 LLDGHKVTTHWQNAQRLAARFPAAEVIFDRIYIRDGHLMTSAGVTAGIDLGLALVAERHG 223 LLD +VTTHWQNA LAARFP A+V D IY+RD L+TSAGVTAGIDL LALV++ HG Sbjct: 122 LLDHRRVTTHWQNASTLAARFPRAQVEPDAIYVRDDRLVTSAGVTAGIDLALALVSQHHG 181 Query: 224 PQVAVAVAKRLVVVAQRQGGQSQFSPYLTAPVDEDSPIARAQAHVMQHVDERHTLQSLAE 283 ++AVAVAKRLVVVAQRQGGQSQFSPYLTAP D SP+AR QAHVM H+ +RHTL+SLA Sbjct: 182 TEIAVAVAKRLVVVAQRQGGQSQFSPYLTAPADPVSPVARIQAHVMTHIGQRHTLESLAA 241 Query: 284 AVGMSVRNFGRAFAQETGITPHEFVERARVDAARRLLEGSDRPLKAVAFDCGFGSADRMR 343 VGMS RN R F QE G+TPHEFV+RAR+DAAR +LE S+RPLK VA++CGFG+ DRMR Sbjct: 242 EVGMSPRNLARYFVQEAGMTPHEFVQRARIDAARMMLEASERPLKTVAYECGFGTVDRMR 301 Query: 344 IVFSERLGVSPAQYRASFRK 363 IVFSERLGV+PAQYRASFR+ Sbjct: 302 IVFSERLGVTPAQYRASFRQ 321 >ref|ZP_06841431.1| transcriptional regulator, AraC family [Burkholderia sp. Ch1-1] gb|EFG70957.1| transcriptional regulator, AraC family [Burkholderia sp. Ch1-1] Length = 319 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 218/315 (69%), Positives = 252/315 (80%) Query: 49 VAIAIHEGVQALDVAGPVDVFAETNGFVPAGDGYETVLVGAGCEPLRASNGMKISADLSF 108 VAIAI GVQALDVAGPVDVF+E N F+ D YE L+GA PLRASNGM + AD +F Sbjct: 4 VAIAIFPGVQALDVAGPVDVFSEANRFIAPDDRYEVTLLGAESAPLRASNGMTLVADATF 63 Query: 109 AEAQQKFDILLVAGGPALPDAAPDPELTQWLRGAPARAELYGSICTGAFALGHAGLLDGH 168 +EA+ FD+ LVAGGPALPD APD + WL ++ YGSICTGAFALGHAGLLDGH Sbjct: 64 SEARHAFDLALVAGGPALPDHAPDARVLDWLANVASQCGRYGSICTGAFALGHAGLLDGH 123 Query: 169 KVTTHWQNAQRLAARFPAAEVIFDRIYIRDGHLMTSAGVTAGIDLGLALVAERHGPQVAV 228 VTTHWQ+A +LAA+FP A V FDRIY+RDG L+TSAGVTAGIDL LALVAE HGPQ+A+ Sbjct: 124 NVTTHWQHAAQLAAQFPNARVDFDRIYLRDGPLVTSAGVTAGIDLSLALVAEDHGPQIAL 183 Query: 229 AVAKRLVVVAQRQGGQSQFSPYLTAPVDEDSPIARAQAHVMQHVDERHTLQSLAEAVGMS 288 AVAKRLVV AQRQGGQSQFSPYLTAP DE SP+A+ QAHVM+ + E T++ LA+ GMS Sbjct: 184 AVAKRLVVFAQRQGGQSQFSPYLTAPADETSPVAKVQAHVMERIRESFTVKQLADVAGMS 243 Query: 289 VRNFGRAFAQETGITPHEFVERARVDAARRLLEGSDRPLKAVAFDCGFGSADRMRIVFSE 348 RNF R F QETG+TPHEFVERARVDAAR+LLE S LKA+A+DCGFG+ADRMRIVF++ Sbjct: 244 ARNFARVFVQETGVTPHEFVERARVDAARKLLESSGAALKAIAYDCGFGTADRMRIVFTK 303 Query: 349 RLGVSPAQYRASFRK 363 R+G +P QYR FR Sbjct: 304 RIGATPMQYRERFRS 318 >ref|YP_552343.1| transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE32993.1| transcriptional regulator, AraC family with amidase-like domain [Burkholderia xenovorans LB400] Length = 319 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 216/315 (68%), Positives = 253/315 (80%) Query: 49 VAIAIHEGVQALDVAGPVDVFAETNGFVPAGDGYETVLVGAGCEPLRASNGMKISADLSF 108 VAIAI GVQALDVAGPVDVF+E N F+ + YE L+GA PLRASNGM + AD +F Sbjct: 4 VAIAIFPGVQALDVAGPVDVFSEANRFIAPNNRYEVTLLGAESTPLRASNGMTLVADATF 63 Query: 109 AEAQQKFDILLVAGGPALPDAAPDPELTQWLRGAPARAELYGSICTGAFALGHAGLLDGH 168 +EA+ FD+ L+AGGPALP+ APD + WL A ++ YGSICTGAFALGHAGLLDGH Sbjct: 64 SEARHTFDLALIAGGPALPERAPDARVLDWLANAASQCGRYGSICTGAFALGHAGLLDGH 123 Query: 169 KVTTHWQNAQRLAARFPAAEVIFDRIYIRDGHLMTSAGVTAGIDLGLALVAERHGPQVAV 228 VTTHWQ+A +LAA+FP A V FDRIY+RDG L+TSAGVTAGIDL LALVAE HGPQ+A+ Sbjct: 124 NVTTHWQHAAQLAAQFPNARVDFDRIYLRDGPLVTSAGVTAGIDLSLALVAEDHGPQIAL 183 Query: 229 AVAKRLVVVAQRQGGQSQFSPYLTAPVDEDSPIARAQAHVMQHVDERHTLQSLAEAVGMS 288 AVAKRLVV AQRQGGQSQFSPYLTAP DE SP+A+ QAHVM+ + E T++ LA+ GMS Sbjct: 184 AVAKRLVVFAQRQGGQSQFSPYLTAPADETSPVAKVQAHVMERIRESFTVKQLADVAGMS 243 Query: 289 VRNFGRAFAQETGITPHEFVERARVDAARRLLEGSDRPLKAVAFDCGFGSADRMRIVFSE 348 RNF R F QETG+TPHEFVERARVDAAR+LLE S LKA+A+DCGFG+ADRMRIVF++ Sbjct: 244 ARNFARVFVQETGVTPHEFVERARVDAARKLLESSGAALKAIAYDCGFGTADRMRIVFTK 303 Query: 349 RLGVSPAQYRASFRK 363 R+G +P QYR FR Sbjct: 304 RIGATPMQYRERFRS 318 >ref|YP_004534356.1| AraC family transcriptional regulator [Novosphingobium sp. PP1Y] emb|CCA92538.1| AraC family transcriptional regulator [Novosphingobium sp. PP1Y] Length = 325 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 222/319 (69%), Positives = 252/319 (78%) Query: 44 MAVQRVAIAIHEGVQALDVAGPVDVFAETNGFVPAGDGYETVLVGAGCEPLRASNGMKIS 103 M V +VA+ +H GVQALDVAGP+DVFAETNGFV YET+LV PLRASN M++ Sbjct: 1 MGVLKVALVVHPGVQALDVAGPIDVFAETNGFVSPEGRYETLLVARDRAPLRASNNMQLL 60 Query: 104 ADLSFAEAQQKFDILLVAGGPALPDAAPDPELTQWLRGAPARAELYGSICTGAFALGHAG 163 DLSF EAQ FD++LVAGGP LP PD E+T WLR P RA +YGSICTGAFALGHAG Sbjct: 61 PDLSFHEAQSPFDLVLVAGGPDLPHVEPDLEMTAWLREMPTRAAVYGSICTGAFALGHAG 120 Query: 164 LLDGHKVTTHWQNAQRLAARFPAAEVIFDRIYIRDGHLMTSAGVTAGIDLGLALVAERHG 223 LLDG +VTTHWQ A +LA FP+A V D IY+ DG L+TSAGVTAGIDL LALV + HG Sbjct: 121 LLDGRRVTTHWQIAAKLAEAFPSARVEPDLIYVSDGPLITSAGVTAGIDLALALVRQHHG 180 Query: 224 PQVAVAVAKRLVVVAQRQGGQSQFSPYLTAPVDEDSPIARAQAHVMQHVDERHTLQSLAE 283 VAVAVAKRLVV+AQRQGGQSQFSPYL+AP D S IAR Q HV+ +V +RHTLQSLAE Sbjct: 181 ASVAVAVAKRLVVLAQRQGGQSQFSPYLSAPADPQSAIARLQNHVILNVGQRHTLQSLAE 240 Query: 284 AVGMSVRNFGRAFAQETGITPHEFVERARVDAARRLLEGSDRPLKAVAFDCGFGSADRMR 343 A GMS RN R F +ETGITPHEFVERAR+DAAR LLE + PLK+VAFDCGFG+ADRMR Sbjct: 241 ASGMSPRNLARQFVRETGITPHEFVERARIDAARMLLEATRLPLKSVAFDCGFGTADRMR 300 Query: 344 IVFSERLGVSPAQYRASFR 362 I F+ RLGV+PAQYR SF+ Sbjct: 301 IAFAARLGVTPAQYRQSFQ 319 >ref|YP_001890638.1| AraC family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD21267.1| transcriptional regulator, AraC family [Burkholderia phytofirmans PsJN] Length = 319 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 212/315 (67%), Positives = 246/315 (78%) Query: 49 VAIAIHEGVQALDVAGPVDVFAETNGFVPAGDGYETVLVGAGCEPLRASNGMKISADLSF 108 VAIAI GVQALDVAGPVDVF+E N F+ D YE L+ A PLRASNGM + AD +F Sbjct: 4 VAIAIFSGVQALDVAGPVDVFSEANRFIAPADAYEVKLISAEAAPLRASNGMMLIADATF 63 Query: 109 AEAQQKFDILLVAGGPALPDAAPDPELTQWLRGAPARAELYGSICTGAFALGHAGLLDGH 168 +A+ FD+ LVAGGPALPD AP+ L +WL + YGSICTGAFALGHAGLLD Sbjct: 64 GQARGPFDLALVAGGPALPDTAPEAPLLEWLANVATQCGRYGSICTGAFALGHAGLLDDR 123 Query: 169 KVTTHWQNAQRLAARFPAAEVIFDRIYIRDGHLMTSAGVTAGIDLGLALVAERHGPQVAV 228 VTTHWQ+A +LAA+FP A V FDRIY+RDG L+TSAGVTAGIDL LALVAE HGP A+ Sbjct: 124 NVTTHWQHAAQLAAQFPKARVDFDRIYLRDGQLVTSAGVTAGIDLSLALVAEDHGPHTAL 183 Query: 229 AVAKRLVVVAQRQGGQSQFSPYLTAPVDEDSPIARAQAHVMQHVDERHTLQSLAEAVGMS 288 AVAKRLVV AQRQGGQSQFSPYLTAP D+ SP+A+ QAHVM+ + E +++ LAE GMS Sbjct: 184 AVAKRLVVFAQRQGGQSQFSPYLTAPADDTSPVAKVQAHVMERIRESFSVKQLAEVAGMS 243 Query: 289 VRNFGRAFAQETGITPHEFVERARVDAARRLLEGSDRPLKAVAFDCGFGSADRMRIVFSE 348 RNF R F QETG+TPHEFVERARVDAAR+LLE S LKA+A+DCGFG+ADRMRIVF++ Sbjct: 244 ARNFARVFVQETGVTPHEFVERARVDAARKLLESSGAALKAIAYDCGFGTADRMRIVFTK 303 Query: 349 RLGVSPAQYRASFRK 363 R+G +P QYR FR Sbjct: 304 RIGATPMQYRERFRS 318