BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0137.0031.p         (189 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_191269.1| hypothetical protein GOX0839 [Gluconobacter oxy...   121   6e-26
ref|NP_880095.1| hypothetical protein BP1342 [Bordetella pertuss...   109   2e-22
ref|NP_884896.1| hypothetical protein BPP2676 [Bordetella parape...   109   2e-22
ref|YP_001601173.1| PadR family transcriptional regulator [Gluco...   108   3e-22
ref|YP_002275525.1| PadR-like family transcriptional regulator [...   108   4e-22

>ref|YP_191269.1| hypothetical protein GOX0839 [Gluconobacter oxydans 621H]
 gb|AAW60613.1| Hypothetical protein GOX0839 [Gluconobacter oxydans 621H]
          Length = 274

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/143 (51%), Positives = 93/143 (65%), Gaps = 12/143 (8%)

Query: 47  FPGSRRLSSQDLQLVILALLGEQPAHGYELIKRIEERSDGFYSPSPGVIYPALTFLEEIG 106
           F   R+L++ +LQLVILALL E PAHGYELI+R+EERS GFY PSPGVIYP+LT+LEE G
Sbjct: 98  FTRGRKLTADELQLVILALLAEAPAHGYELIRRLEERSGGFYKPSPGVIYPSLTYLEETG 157

Query: 107 HASVTQDAARKLYSITEQGRAYLGEXPHGGGARSLRRRER--SRWRSVRRGAP-----CP 159
            A+VTQ+  RKLYS+T++G+A+  E      AR L    R  +R   VR          P
Sbjct: 158 LAAVTQEGNRKLYSLTDEGKAH-HEANKAEAARILDIMSRIGARMADVREAFTGINDLDP 216

Query: 160 SRAEE----RAAPEARLRCRRGA 178
           +  +E    R A +A L+ RRGA
Sbjct: 217 TLGQEFHDARFALKAALKSRRGA 239


>ref|NP_880095.1| hypothetical protein BP1342 [Bordetella pertussis Tohama I]
 ref|NP_889368.1| hypothetical protein BB2832 [Bordetella bronchiseptica RB50]
 emb|CAE41634.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 emb|CAE33324.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
 gb|AEE66714.1| hypothetical protein BPTD_1328 [Bordetella pertussis CS]
          Length = 210

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 67/86 (77%)

Query: 44  GGDFPGSRRLSSQDLQLVILALLGEQPAHGYELIKRIEERSDGFYSPSPGVIYPALTFLE 103
           G D+   R+ S+ DLQL+ILALL E P+HGYELIK +  RS GFY+PSPG++YP LT+LE
Sbjct: 34  GPDWRRGRKFSADDLQLMILALLDEGPSHGYELIKALGARSRGFYTPSPGMVYPTLTWLE 93

Query: 104 EIGHASVTQDAARKLYSITEQGRAYL 129
           E GHA+V+QD ARK Y + E GRA+L
Sbjct: 94  EAGHATVSQDGARKHYHLAEPGRAHL 119


>ref|NP_884896.1| hypothetical protein BPP2676 [Bordetella parapertussis 12822]
 emb|CAE37969.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 210

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 67/86 (77%)

Query: 44  GGDFPGSRRLSSQDLQLVILALLGEQPAHGYELIKRIEERSDGFYSPSPGVIYPALTFLE 103
           G D+   R+ S+ DLQL+ILALL E P+HGYELIK +  RS GFY+PSPG++YP LT+LE
Sbjct: 34  GPDWRRGRKFSADDLQLMILALLEEGPSHGYELIKALGARSRGFYTPSPGMVYPTLTWLE 93

Query: 104 EIGHASVTQDAARKLYSITEQGRAYL 129
           E GHA+V+QD ARK Y + E GRA+L
Sbjct: 94  EAGHATVSQDGARKHYHLAEPGRAHL 119


>ref|YP_001601173.1| PadR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 emb|CAP54835.1| putative transcriptional Regulator, PadR-like family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 209

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/144 (48%), Positives = 95/144 (65%), Gaps = 10/144 (6%)

Query: 46  DFPGSRRLSSQDLQLVILALLGEQPAHGYELIKRIEERSDGFYSPSPGVIYPALTFLEEI 105
           DFP  R+ SS++LQLV+L+LL ++PAHGYELI+ +EE+S GFY+PSPG++YPALT+LEEI
Sbjct: 43  DFPAGRKFSSEELQLVLLSLLADRPAHGYELIRLLEEKSGGFYAPSPGMVYPALTYLEEI 102

Query: 106 GHASVTQDAARKLYSITEQGRAYL-GEXPHGGGARSLRRRERSRWRSVRRG-----APCP 159
           GHA+VT +  RKLY++T++GRAYL     H      +  R   R   VR       AP P
Sbjct: 103 GHATVTPEGNRKLYTLTDEGRAYLEANRGHADAILDMLARIGGRMAEVRDAFAGVDAPDP 162

Query: 160 SRAEE----RAAPEARLRCRRGAA 179
             A++    R A +  L  +RG A
Sbjct: 163 QAADDLHRARHAIKQALMRKRGCA 186


>ref|YP_002275525.1| PadR-like family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gb|ACI50910.1| transcriptional regulator, PadR-like family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 209

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/144 (48%), Positives = 95/144 (65%), Gaps = 10/144 (6%)

Query: 46  DFPGSRRLSSQDLQLVILALLGEQPAHGYELIKRIEERSDGFYSPSPGVIYPALTFLEEI 105
           DFP  R+ SS++LQLV+L+LL ++PAHGYELI+ +EE+S GFY+PSPG++YPALT+LEEI
Sbjct: 43  DFPAGRKFSSEELQLVLLSLLADRPAHGYELIRLLEEKSGGFYAPSPGMVYPALTYLEEI 102

Query: 106 GHASVTQDAARKLYSITEQGRAYL-GEXPHGGGARSLRRRERSRWRSVRRG-----APCP 159
           GHA+VT +  RKLY++T++GRAYL     H      +  R   R   VR       AP P
Sbjct: 103 GHATVTPEGNRKLYTLTDEGRAYLEANRGHADAILDMLARIGGRMAEVRDAFAGVDAPDP 162

Query: 160 SRAEE----RAAPEARLRCRRGAA 179
             A++    R A +  L  +RG A
Sbjct: 163 QAADDLHRARHAIKQALMRKRGCA 186