BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0137.0024.p (313 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_918322.1| LysR family transcriptional regulator [Paracocc... 407 e-112 ref|YP_001629354.1| LysR family transcriptional regulator [Borde... 395 e-108 ref|YP_003979651.1| LysR family transcriptional regulator [Achro... 384 e-105 ref|ZP_06688217.1| LysR family transcriptional regulator [Achrom... 380 e-103 gb|AEA83722.1| transcriptional regulator [Pseudomonas stutzeri D... 344 1e-92 >ref|YP_918322.1| LysR family transcriptional regulator [Paracoccus denitrificans PD1222] gb|ABL72626.1| transcriptional regulator, LysR family [Paracoccus denitrificans PD1222] Length = 303 Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust. Identities = 199/297 (67%), Positives = 236/297 (79%) Query: 1 MLDNLTLDQIRTFVAIAESGSFRAAAAKLARVQSAVSHAIANLEAELGLTLFDRSSHRPA 60 MLD LTLDQIRTFVA+A+ GSFRA A L+R QS VS ++ANLEA+LG+ LFDRS HRP Sbjct: 1 MLDALTLDQIRTFVAVADKGSFRAGAGSLSRAQSGVSASVANLEAQLGVQLFDRSGHRPV 60 Query: 61 LTAEGKALLGNARDLLLRVDAMRARARGLGDGVESELSLVVDTLFPIAAVGAALTEMRAA 120 LTAEGK LL +ARD+LLRVDAMRARARG G+GVE ELS+ DTLFPI VG AL EMR A Sbjct: 61 LTAEGKTLLADARDILLRVDAMRARARGFGEGVELELSITADTLFPIPLVGVALAEMRRA 120 Query: 121 YPSVSVRLAVEPMGGPITGLTERRSALAVTVGEDFRDPRLALDAICAVQIVAVASAGHPL 180 YPSV++RLA++P+GGP+ LTERR LA+ VGEDFRDPR++ +A+ V VAV +AGH L Sbjct: 121 YPSVALRLAIQPLGGPLQALTERRCTLAIMVGEDFRDPRISFEALSPVSQVAVVAAGHAL 180 Query: 181 GRRGRKNVADLADHLQIVLSDPTPLSEGRSFGVLSPQICRVSNQDTKHAMILAGLGWGRL 240 + DLADH+QIVLSDP+PLSEGR FGVLSPQ CRV+ QDTKHA+IL+G+GWGRL Sbjct: 181 AAGRGIGIPDLADHVQIVLSDPSPLSEGRDFGVLSPQSCRVNTQDTKHALILSGVGWGRL 240 Query: 241 PLWQVARDLKERRLVRVETGALGRNAALAMEAYLAHRLDEPLGPAARVFANALTRIA 297 P W VA DL+ RLVR++T ALGRNA + ++YLAHRLDEP GPAA FA L R+ Sbjct: 241 PSWLVADDLRSGRLVRLDTAALGRNAQVTSQSYLAHRLDEPFGPAASTFAKVLMRLC 297 >ref|YP_001629354.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] emb|CAP41083.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 302 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 200/301 (66%), Positives = 237/301 (78%), Gaps = 3/301 (0%) Query: 1 MLDNLTLDQIRTFVAIAESGSFRAAAAKLARVQSAVSHAIANLEAELGLTLFDRSSHRPA 60 MLD LTLDQIRTFVA+AE GSFRA AA+L RVQS VS +IANLEA+LG+ LFDR+ HRPA Sbjct: 1 MLDALTLDQIRTFVAVAEQGSFRAGAARLRRVQSGVSASIANLEAQLGIALFDRAGHRPA 60 Query: 61 LTAEGKALLGNARDLLLRVDAMRARARGLGDGVESELSLVVDTLFPIAAVGAALTEMRAA 120 LT +G+ALL NARD+LLRVDAMRARARG G+GVE EL+LVVDTLFP+ +GAAL E++AA Sbjct: 61 LTPQGRALLVNARDILLRVDAMRARARGFGEGVELELALVVDTLFPLHQIGAALAELQAA 120 Query: 121 YPSVSVRLAVEPMGGPITGLTERRSALAVTVGEDFRDPRLALDAICAVQIVAVASAGHPL 180 YPSV++RL +EP+GGP+ L E+R LA+ GE+FRDPR+A +A+ V VAV + GHPL Sbjct: 121 YPSVAIRLDIEPLGGPLQALLEQRCTLAIMAGENFRDPRIAFEALSEVNQVAVVAVGHPL 180 Query: 181 GRRGRKN---VADLADHLQIVLSDPTPLSEGRSFGVLSPQICRVSNQDTKHAMILAGLGW 237 R + A+LADH+QIVL+DPTP S GR FGV+SP+ RV NQD KHA+ILAG+GW Sbjct: 181 AARAQGEHIGAAELADHVQIVLADPTPHSSGRDFGVMSPRTYRVGNQDAKHALILAGVGW 240 Query: 238 GRLPLWQVARDLKERRLVRVETGALGRNAALAMEAYLAHRLDEPLGPAARVFANALTRIA 297 GRLP WQV RDL E RLVRV T LGRN+A E YLAHRLD PLGPAAR A L R+ Sbjct: 241 GRLPEWQVRRDLDEARLVRVRTPVLGRNSAAVSEIYLAHRLDAPLGPAARSLAAILGRLC 300 Query: 298 A 298 A Sbjct: 301 A 301 >ref|YP_003979651.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP16936.1| bacterial regulatory helix-turn-helix protein, LysR family protein 113 [Achromobacter xylosoxidans A8] Length = 314 Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/288 (65%), Positives = 232/288 (80%), Gaps = 4/288 (1%) Query: 1 MLDNLTLDQIRTFVAIAESGSFRAAAAKLARVQSAVSHAIANLEAELGLTLFDRSSHRPA 60 M+D LTLDQ+R F A+A++GSFRAAA +L+RVQSAVSHAIAN+EA+LG+TLFDRS HRP Sbjct: 1 MIDALTLDQLRVFAAVADAGSFRAAARRLSRVQSAVSHAIANMEAQLGVTLFDRSGHRPV 60 Query: 61 LTAEGKALLGNARDLLLRVDAMRARARGLGDGVESELSLVVDTLFPIAAVGAALTEMRAA 120 +T EG ALL NARD+LLRVDAMRARA+GLG+GVE ELSL VDTLFPIA VGAAL +RAA Sbjct: 61 MTPEGAALLANARDILLRVDAMRARAQGLGEGVELELSLAVDTLFPIAEVGAALNALRAA 120 Query: 121 YPSVSVRLAVEPMGGPITGLTERRSALAVTVGEDFRDPRLALDAICAVQIVAVASAGHPL 180 YPSV+VR++V P+GGP+ L R LA+ G+ FR+PR+ + A+ +VQ+VAV AGH L Sbjct: 121 YPSVAVRVSVLPLGGPVEALLTRSHTLAIVAGDHFRNPRIVMQALSSVQMVAVVGAGHAL 180 Query: 181 GRRGRKNV----ADLADHLQIVLSDPTPLSEGRSFGVLSPQICRVSNQDTKHAMILAGLG 236 +R ++ ADLADH+QIV DP+ L++GR F VLSPQ CRVS QDTKHA+ILAG+G Sbjct: 181 AQRVAADIPLGPADLADHVQIVQMDPSSLTQGRDFAVLSPQTCRVSGQDTKHALILAGVG 240 Query: 237 WGRLPLWQVARDLKERRLVRVETGALGRNAALAMEAYLAHRLDEPLGP 284 WGRLP WQV RDL E RL+R+ T +LGR + +A E YLAHR+D+PLGP Sbjct: 241 WGRLPFWQVQRDLAEGRLLRLPTDSLGRGSQVASETYLAHRIDQPLGP 288 >ref|ZP_06688217.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF74869.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 307 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 192/297 (64%), Positives = 229/297 (77%), Gaps = 4/297 (1%) Query: 1 MLDNLTLDQIRTFVAIAESGSFRAAAAKLARVQSAVSHAIANLEAELGLTLFDRSSHRPA 60 M+D LTLDQ+R F A+A++GSFRAAA +L+RVQSAVSHAIAN+E +LG+TLFDR+ HRP Sbjct: 1 MIDALTLDQLRVFAAVADAGSFRAAARRLSRVQSAVSHAIANMELQLGVTLFDRAGHRPV 60 Query: 61 LTAEGKALLGNARDLLLRVDAMRARARGLGDGVESELSLVVDTLFPIAAVGAALTEMRAA 120 +T +G+ALL NARD+LLRVDAMRARA G+G GVE ELSLVVDTLFPIA VGAAL M Sbjct: 61 MTPQGQALLANARDILLRVDAMRARALGMGTGVELELSLVVDTLFPIATVGAALKTMHDR 120 Query: 121 YPSVSVRLAVEPMGGPITGLTERRSALAVTVGEDFRDPRLALDAICAVQIVAVASAGHPL 180 YP+V+ R+AV P+GGPI L L + GE FR PR+A+ A+ +VQ+VAV A HPL Sbjct: 121 YPTVATRVAVLPLGGPIDALLSGSHTLGIIAGEHFRHPRIAVLALSSVQMVAVVGANHPL 180 Query: 181 GRR----GRKNVADLADHLQIVLSDPTPLSEGRSFGVLSPQICRVSNQDTKHAMILAGLG 236 R G +LADHLQIV SDP+ LSEGR F VLSPQ CRVS QDTKHA+I+AGLG Sbjct: 181 ARHAASAGALGAPELADHLQIVQSDPSGLSEGRDFSVLSPQTCRVSGQDTKHALIVAGLG 240 Query: 237 WGRLPLWQVARDLKERRLVRVETGALGRNAALAMEAYLAHRLDEPLGPAARVFANAL 293 WGRLPLWQV DL + RLVR+ T +LGR + +A E YLAHR+D PLGPAAR FA A+ Sbjct: 241 WGRLPLWQVEHDLADGRLVRLPTRSLGRGSQVATETYLAHRIDMPLGPAARAFAEAV 297 >gb|AEA83722.1| transcriptional regulator [Pseudomonas stutzeri DSM 4166] Length = 302 Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 197/296 (66%), Positives = 227/296 (76%), Gaps = 3/296 (1%) Query: 1 MLDNLTLDQIRTFVAIAESGSFRAAAAKLARVQSAVSHAIANLEAELGLTLFDRSSHRPA 60 MLD +TLDQIRTFV +A+SGSFR+ AA+L RVQSAVSHAIANLEAEL L LFDRS +RP Sbjct: 1 MLDAMTLDQIRTFVTVADSGSFRSGAARLLRVQSAVSHAIANLEAELELQLFDRSGYRPV 60 Query: 61 LTAEGKALLGNARDLLLRVDAMRARARGLGDGVESELSLVVDTLFPIAAVGAALTEMRAA 120 LT EG+ALL +ARD+LLR DAMRARAR LG GVE EL+LVVDTLFPI +V A+ A Sbjct: 61 LTPEGEALLAHARDILLRADAMRARARALGAGVELELALVVDTLFPIESVARAVAAASAE 120 Query: 121 YPSVSVRLAVEPMGGPITGLTERRSALAVTVGEDFRDPRLALDAICAVQIVAVASAGHPL 180 +PS R+ V+ +GGPI L +RR ALA+ VGEDFR+PRL+L+AI +VQ VAV A HPL Sbjct: 121 FPSTCFRMDVQALGGPIAALEDRRCALAIIVGEDFRNPRLSLEAIGSVQQVAVVCATHPL 180 Query: 181 G---RRGRKNVADLADHLQIVLSDPTPLSEGRSFGVLSPQICRVSNQDTKHAMILAGLGW 237 R R +ADLA+HLQIVL+DPTPLSEGRSFGVLSP CRV+ QD K A+I GLGW Sbjct: 181 AAREERERLGIADLANHLQIVLTDPTPLSEGRSFGVLSPFTCRVNTQDAKLALIREGLGW 240 Query: 238 GRLPLWQVARDLKERRLVRVETGALGRNAALAMEAYLAHRLDEPLGPAARVFANAL 293 GRLP WQV DL RLVRV LGRN+ + EAYLAHRLDEPLGP A+ F AL Sbjct: 241 GRLPTWQVQNDLDSGRLVRVPIPDLGRNSEVQSEAYLAHRLDEPLGPVAQAFRRAL 296