BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0137.0010.p (385 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001208348.1| transcriptional regulator [Bradyrhizobium sp... 549 e-154 ref|YP_001237273.1| transcriptional regulator [Bradyrhizobium sp... 516 e-144 ref|YP_001757220.1| transcriptional regulator domain-containing ... 427 e-117 ref|NP_105015.1| adenylate cyclase cya3 [Mesorhizobium loti MAFF... 297 2e-78 ref|YP_003692507.1| transcriptional regulator [Starkeya novella ... 285 1e-74 >ref|YP_001208348.1| transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL80133.1| putative transcriptional regulatory protein, HTH DNA binding domain [Bradyrhizobium sp. ORS 278] Length = 525 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 274/384 (71%), Positives = 316/384 (82%) Query: 1 MSGDPEQDYFADGIAEDITTALARCSRLTVIARNSAFTYKGKAVDIRQVGRDLGVGYVLE 60 MSGDP QDYFADG+ EDI TAL+RCS L VIARNS+FTYKG+AVDIR+VGR+LGVGYVLE Sbjct: 141 MSGDPAQDYFADGMVEDIITALSRCSGLAVIARNSSFTYKGRAVDIREVGRELGVGYVLE 200 Query: 61 GSVRRGGDRLRITGQLIDAVSGAHLWADRFDGAATDVFDLQDRITENVVGAIEPTLLVAE 120 GSVRR G+RLRI GQLIDA SGAHLWADRFDG +D+F LQDRITE+VV AIEPTL +AE Sbjct: 201 GSVRRVGERLRINGQLIDAGSGAHLWADRFDGDVSDLFALQDRITESVVAAIEPTLELAE 260 Query: 121 AERVRAAPPDRLDAYDLLLRAYSLRYEFTPESMEAALDCLDQALALDPAYAPALAASAYC 180 + R RAAP R DAYDLLLRA SLR FTPES++AA+ CLD ALA+D YAPA+AA AYC Sbjct: 261 SARRRAAPQPRPDAYDLLLRAASLRDAFTPESLKAAIACLDHALAIDADYAPAMAARAYC 320 Query: 181 HAMRHVQGWLKPNDAYRERAVAQAWRAVELAPGDPQVLWMAAFAIWNMADEIEPARDLFE 240 A+RH Q W +P++ YR AVA AWRA E APGD QVLWMAAFAIWNMADE PAR+LF+ Sbjct: 321 QALRHFQRWSEPDEDYRADAVALAWRATERAPGDAQVLWMAAFAIWNMADESAPARELFK 380 Query: 241 RSLAINPNSAMALVLGGWIEAMRGNQKAGRAMIERAQRLNPRDPRGWFAAAALAICAVLD 300 RSLAIN NSAMAL + GWI AM G GRAMIERA RLNPRDPRGWFAA A+AICA+ Sbjct: 381 RSLAINANSAMALTMSGWIAAMAGQPAEGRAMIERALRLNPRDPRGWFAAGAMAICALAG 440 Query: 301 RNFAEAVMWADKALAQNRRFAVALRVLIVALVKTGDNARAAQIARELLKIDPEFTISGFM 360 + A+ WA+ AL QNRRFAVALRVLIVALV+ GD ARA +AR+LL ++P+ T+SGF+ Sbjct: 441 DDLGGAIRWAETALGQNRRFAVALRVLIVALVRAGDLARATGVARQLLIVEPDLTVSGFL 500 Query: 361 SRVPFPVQSMSATYRETLKAAGVP 384 +R+PFPVQ+M+ TY E L+AAGVP Sbjct: 501 ARIPFPVQTMATTYAEALRAAGVP 524 >ref|YP_001237273.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ33367.1| putative transcriptional regulatory protein, HTH DNA binding domain protein [Bradyrhizobium sp. BTAi1] Length = 518 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 271/384 (70%), Positives = 313/384 (81%) Query: 1 MSGDPEQDYFADGIAEDITTALARCSRLTVIARNSAFTYKGKAVDIRQVGRDLGVGYVLE 60 + DPEQ+YFADGI EDI TAL+RCS L VIARNS+F YKGKAVDIR+VGR+LG GYVLE Sbjct: 134 IGDDPEQEYFADGIVEDIITALSRCSGLAVIARNSSFIYKGKAVDIREVGRELGAGYVLE 193 Query: 61 GSVRRGGDRLRITGQLIDAVSGAHLWADRFDGAATDVFDLQDRITENVVGAIEPTLLVAE 120 GSVRR G RLRITGQLIDA SG HLWA+RFDG DVF LQDRI+E++V AIEPTL + E Sbjct: 194 GSVRRAGSRLRITGQLIDASSGVHLWAERFDGQIDDVFALQDRISESIVAAIEPTLELVE 253 Query: 121 AERVRAAPPDRLDAYDLLLRAYSLRYEFTPESMEAALDCLDQALALDPAYAPALAASAYC 180 ER RA P DAYDLLLRA SLR FTP+S+ AA+ CLDQALA+DPA APA+AA AYC Sbjct: 254 GERRRAMRPLHPDAYDLLLRAASLRDAFTPDSLAAAITCLDQALAIDPACAPAMAARAYC 313 Query: 181 HAMRHVQGWLKPNDAYRERAVAQAWRAVELAPGDPQVLWMAAFAIWNMADEIEPARDLFE 240 A+RH QGW P++ Y+ AVA AWRA E AP D QVLWMAAFAIWNMAD+ PAR+LF Sbjct: 314 QALRHFQGWRAPDEDYQASAVALAWRASECAPNDAQVLWMAAFAIWNMADDTAPARELFR 373 Query: 241 RSLAINPNSAMALVLGGWIEAMRGNQKAGRAMIERAQRLNPRDPRGWFAAAALAICAVLD 300 RSLAIN NSAMAL L GWIE M G AGRA+IERAQRLNPRDPRGWFAAAA+AI AV + Sbjct: 374 RSLAINSNSAMALTLSGWIEIMAGETAAGRALIERAQRLNPRDPRGWFAAAAMAIHAVAE 433 Query: 301 RNFAEAVMWADKALAQNRRFAVALRVLIVALVKTGDNARAAQIARELLKIDPEFTISGFM 360 +FA A+ WA+ ALAQNRRFAVALRVLIVALV++G ARA +AR+LL+I+P+ T+S F+ Sbjct: 434 DDFAAAIQWAETALAQNRRFAVALRVLIVALVRSGHLARATSVARQLLEIEPDLTVSEFL 493 Query: 361 SRVPFPVQSMSATYRETLKAAGVP 384 +R+PFPV+ M+ATY E L+AAGVP Sbjct: 494 ARIPFPVRKMAATYAEALQAAGVP 517 >ref|YP_001757220.1| transcriptional regulator domain-containing protein [Methylobacterium radiotolerans JCM 2831] gb|ACB26537.1| transcriptional regulator domain protein [Methylobacterium radiotolerans JCM 2831] Length = 525 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 233/385 (60%), Positives = 284/385 (73%), Gaps = 1/385 (0%) Query: 1 MSGDPEQDYFADGIAEDITTALARCSRLTVIARNSAFTYKGKAVDIRQVGRDLGVGYVLE 60 MS DPEQDYFADG+ E+I TAL+R S L VIARNS FTY+G A+D+R+VG++LGVGYV+ Sbjct: 140 MSADPEQDYFADGMTEEIITALSRVSGLFVIARNSTFTYRGAAIDVRRVGQELGVGYVVA 199 Query: 61 GSVRRGGDRLRITGQLIDAVSGAHLWADRFDGAATDVFDLQDRITENVVGAIEPTLLVAE 120 GSVRRGG RLRITGQL+DA +GAHLWAD FDG DVF LQ+R+ AIEPTL +AE Sbjct: 200 GSVRRGGSRLRITGQLVDAGTGAHLWADSFDGGLDDVFALQERVAARAAAAIEPTLQLAE 259 Query: 121 AERVRAAPPDRLDAYDLLLRAYSLRYEFTPESMEAALDCLDQALALDPAYAPALAASAYC 180 R+ P DAYD LLRA + +FT M AALD LD+ALALDP YAPA+AA+AYC Sbjct: 260 IRRLGRDAPAHPDAYDRLLRANARLADFTAAGMAAALDHLDEALALDPGYAPAMAAAAYC 319 Query: 181 HAMRHVQGWLKPNDAYRERAVAQAWRAVELAPGDPQVLWMAAFAIWNMADE-IEPARDLF 239 A H QGW+ +A R AV AW AVE APGD QVLWMAAFA+WNM++ E ARDLF Sbjct: 320 RAQCHFQGWIAQGEAERAAAVRLAWGAVERAPGDAQVLWMAAFAVWNMSETGRERARDLF 379 Query: 240 ERSLAINPNSAMALVLGGWIEAMRGNQKAGRAMIERAQRLNPRDPRGWFAAAALAICAVL 299 R+L +NPNSA+AL L GWIE M G +AGRAM+ERA +LNPRDPRGW + +A+ AV Sbjct: 380 GRALLVNPNSALALTLAGWIETMCGRAEAGRAMVERALQLNPRDPRGWLMSGVMAVAAVS 439 Query: 300 DRNFAEAVMWADKALAQNRRFAVALRVLIVALVKTGDNARAAQIARELLKIDPEFTISGF 359 + ++ +A+ WA++ALAQNRRFAVALR L VA V G RA Q ELL+I+PE T+SGF Sbjct: 440 EADYPKAIRWAERALAQNRRFAVALRALAVAHVGLGQPERARQAVAELLEIEPELTVSGF 499 Query: 360 MSRVPFPVQSMSATYRETLKAAGVP 384 ++R+PFPV ++ Y E L AG+P Sbjct: 500 LARIPFPVAALGQRYAEALALAGLP 524 >ref|NP_105015.1| adenylate cyclase cya3 [Mesorhizobium loti MAFF303099] dbj|BAB50801.1| adenylate cyclase; Cya3 [Mesorhizobium loti MAFF303099] Length = 581 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 165/386 (42%), Positives = 231/386 (59%), Gaps = 6/386 (1%) Query: 1 MSGDPEQDYFADGIAEDITTALARCSRLTVIARNSAFTYKGKAVDIRQVGRDLGVGYVLE 60 MSGDP+Q+YFADG+ EDI T L+R + VIARNS+FTYKG+AVD+RQVGR+LGV YVLE Sbjct: 199 MSGDPDQEYFADGLVEDIITGLSRVNSFFVIARNSSFTYKGRAVDLRQVGRELGVRYVLE 258 Query: 61 GSVRRGGDRLRITGQLIDAVSGAHLWADRFDGAATDVFDLQDRITENVVGAIEPTLLVAE 120 GS+RR G R+RI+GQL+DA+SG H+WADRF+G +D+FDLQD++TE+VVGA+EP++ + E Sbjct: 259 GSIRRAGSRVRISGQLVDAISGHHVWADRFEGDLSDIFDLQDKVTESVVGAVEPSIRLQE 318 Query: 121 AERVRAAPPDRLDAYDLLLRAYSLRYEFTPESMEAALDCLDQALALDPAYAPALAASAYC 180 ++ R P D + AYDL LRA Y T E ++AL++DP + A AY Sbjct: 319 IKQARMKPTDYISAYDLYLRALPRFYSMTREGFADVRRLTNEALSIDPGFNLAKGLGAYI 378 Query: 181 HAMRHVQGWLKPNDAYRERAVAQAWRAVELAPGDPQVLWMAAFAIWNMADEIEPARDLFE 240 ++ Q W +P+D AV A + A DP L AA I A + E A E Sbjct: 379 RSLSVSQCWHEPDDV--RVAVRMAREVLAEARDDPTSLRFAAQVIAYSAKDYEMALGAIE 436 Query: 241 RSLAINPNSAMALVLGGWIEAMRGNQKAGRAMIERAQRLNPRDPRGWFAAAALAICAVLD 300 RSL +NPNSA GW+ A RA RL+P DP A + + + ++ Sbjct: 437 RSLLLNPNSAQGHTGSGWVNAHSSRPLVAIEHFHRAMRLSPVDPEKGIALSGIGMSYLML 496 Query: 301 RNFAEAVMWADKALAQNRRFAVALRVLIVALVKTG--DNARAAQIARELLKIDPEFTISG 358 + EA+ W ++AL + + + RV+I+ALVK D A+AA AR L++ P +T++ Sbjct: 497 ERYEEALAWGERALHEMPNYGSSHRVVIMALVKLNRLDEAQAA--ARRLMEAFPTYTLTL 554 Query: 359 FMSRVPFPVQSMSATYRETLKAAGVP 384 P+ + + Y E L +GVP Sbjct: 555 QRQINPWLDKVFAERYVEALGISGVP 580 >ref|YP_003692507.1| transcriptional regulator [Starkeya novella DSM 506] gb|ADH87888.1| transcriptional regulator domain protein [Starkeya novella DSM 506] Length = 525 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 162/385 (42%), Positives = 224/385 (58%) Query: 1 MSGDPEQDYFADGIAEDITTALARCSRLTVIARNSAFTYKGKAVDIRQVGRDLGVGYVLE 60 +SGDPEQDYFADG+AE+I TAL+R L VIARNS+F Y+G+A D++Q+ R+LGV YVLE Sbjct: 140 LSGDPEQDYFADGVAEEIITALSRVRWLFVIARNSSFAYRGRAADVQQISRELGVTYVLE 199 Query: 61 GSVRRGGDRLRITGQLIDAVSGAHLWADRFDGAATDVFDLQDRITENVVGAIEPTLLVAE 120 GSVR+ DR+RITGQL++A + +LWADRF+GA D+F LQDRI+ NVVGAI P + +AE Sbjct: 200 GSVRKAADRIRITGQLVNASTNGYLWADRFEGALDDIFTLQDRISGNVVGAIAPQMELAE 259 Query: 121 AERVRAAPPDRLDAYDLLLRAYSLRYEFTPESMEAALDCLDQALALDPAYAPALAASAYC 180 ER R P + L AYD LR + + ES+E AL +A+ LD +AP A +A+ Sbjct: 260 IERARRKPTENLSAYDCYLRGLAHLHRGGRESVEEALPLFRKAIELDGEFAPPYAMAAWG 319 Query: 181 HAMRHVQGWLKPNDAYRERAVAQAWRAVELAPGDPQVLWMAAFAIWNMADEIEPARDLFE 240 + R V GW +A A R VEL D VL A A+ ++A E E L + Sbjct: 320 YFWRKVNGWTIDPVQETAEGIALARRGVELGRDDAVVLARAGHALAHLAGEFESGIGLLD 379 Query: 241 RSLAINPNSAMALVLGGWIEAMRGNQKAGRAMIERAQRLNPRDPRGWFAAAALAICAVLD 300 R+L +NPN A A LGG++ G +A E A RL+P DP + A +A+ + Sbjct: 380 RALFLNPNLAPAWFLGGFLRVWHGEPEAAIDYFEHAMRLSPVDPELYRMQAGIAMAHLFA 439 Query: 301 RNFAEAVMWADKALAQNRRFAVALRVLIVALVKTGDNARAAQIARELLKIDPEFTISGFM 360 F A +WAD+A F +A+ + +G A + +L ++ P ISG Sbjct: 440 GRFETASLWADQAQRNLPSFLMAVATGAASQALSGRTEEARRTMDQLRELAPALHISGLK 499 Query: 361 SRVPFPVQSMSATYRETLKAAGVPD 385 +P Q A + + L+ AG+PD Sbjct: 500 DWLPIRRQEDFALFADGLRQAGLPD 524