BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0137.0009.p         (132 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001237273.1| transcriptional regulator [Bradyrhizobium sp...   159   2e-37
ref|YP_001208348.1| transcriptional regulator [Bradyrhizobium sp...   154   6e-36
ref|NP_103466.1| adenylate cyclase [Mesorhizobium loti MAFF30309...   150   8e-35
ref|NP_771836.1| hypothetical protein bll5196 [Bradyrhizobium ja...   144   4e-33
ref|YP_001757220.1| transcriptional regulator domain-containing ...   143   1e-32

>ref|YP_001237273.1| transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gb|ABQ33367.1| putative transcriptional regulatory protein, HTH DNA binding domain
           protein [Bradyrhizobium sp. BTAi1]
          Length = 518

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 79/112 (70%), Positives = 96/112 (85%), Gaps = 1/112 (0%)

Query: 1   LTYHFNDLTLDSERRELRRGDALVAVEPQVFDLIEFLIRARDRVVSRDEVLAAVWHGRIV 60
           + Y F+D  LD +RRELRRGD L+A+EPQVFDL+ +LIR RDRVVSRD++LA VW GRIV
Sbjct: 5   VLYRFDDFLLDLDRRELRRGDGLIALEPQVFDLLAYLIRTRDRVVSRDDILAEVWSGRIV 64

Query: 61  SEATLSSRINAARTAIGDNGEEQRLIRTLPRKGLRFVGDIREDTAPDR-PVA 111
           SEATL+SRI+AAR+AIGD+GE QRLIRT+PRKG+RFVG++RE  A  R PVA
Sbjct: 65  SEATLASRISAARSAIGDSGETQRLIRTIPRKGIRFVGEVREQAAMVRTPVA 116


>ref|YP_001208348.1| transcriptional regulator [Bradyrhizobium sp. ORS 278]
 emb|CAL80133.1| putative transcriptional regulatory protein, HTH DNA binding domain
           [Bradyrhizobium sp. ORS 278]
          Length = 525

 Score =  154 bits (388), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 88/105 (83%)

Query: 1   LTYHFNDLTLDSERRELRRGDALVAVEPQVFDLIEFLIRARDRVVSRDEVLAAVWHGRIV 60
           + Y F+D  LD +RRELRRG   VA+EPQVFDLI FLI+ARD VVSRDE+L AVW GRIV
Sbjct: 12  VVYRFDDFVLDPDRRELRRGGDPVALEPQVFDLIAFLIKARDHVVSRDEILDAVWGGRIV 71

Query: 61  SEATLSSRINAARTAIGDNGEEQRLIRTLPRKGLRFVGDIREDTA 105
           SEATL+SRI+AAR+AIGDNGE QRLIRT PRKG+RF+ ++RE  A
Sbjct: 72  SEATLASRISAARSAIGDNGEAQRLIRTFPRKGVRFIAEVREQAA 116


>ref|NP_103466.1| adenylate cyclase [Mesorhizobium loti MAFF303099]
 dbj|BAB49252.1| adenylate cyclase [Mesorhizobium loti MAFF303099]
          Length = 541

 Score =  150 bits (378), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 72/120 (60%), Positives = 94/120 (78%), Gaps = 5/120 (4%)

Query: 1   LTYHFNDLTLDSERRELRRGDALVAVEPQVFDLIEFLIRARDRVVSRDEVLAAVWHGRIV 60
           L Y F D  LD +RRELRRG++L+AVEPQVFDL+++LIR R+RVVS+D+++ AVW GRIV
Sbjct: 26  LPYLFEDFALDGDRRELRRGNSLIAVEPQVFDLLQYLIRNRERVVSKDDLVDAVWQGRIV 85

Query: 61  SEATLSSRINAARTAIGDNGEEQRLIRTLPRKGLRFVGDIRED-----TAPDRPVADNAG 115
           S+ATL+SR+NAAR+A+ DNGE+QRL+RT PR+G RFVG + E+     TAP  P     G
Sbjct: 86  SDATLASRVNAARSALQDNGEQQRLVRTFPRRGFRFVGTVHEEAGAEATAPVEPAKPGLG 145


>ref|NP_771836.1| hypothetical protein bll5196 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50461.1| bll5196 [Bradyrhizobium japonicum USDA 110]
          Length = 656

 Score =  144 bits (364), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 86/104 (82%)

Query: 1   LTYHFNDLTLDSERRELRRGDALVAVEPQVFDLIEFLIRARDRVVSRDEVLAAVWHGRIV 60
           L Y F++  LD++RRELRRG  LVAV PQVFDL+E+LIR R+ V+S+DE++ A+W GRIV
Sbjct: 132 LRYLFDNCALDTDRRELRRGAELVAVSPQVFDLLEYLIRNREHVISKDELIEAIWKGRIV 191

Query: 61  SEATLSSRINAARTAIGDNGEEQRLIRTLPRKGLRFVGDIREDT 104
           SE  L++R+NAAR+AIGD GE QRLIRTLPRKG RFVG ++E T
Sbjct: 192 SETALTTRLNAARSAIGDTGEGQRLIRTLPRKGFRFVGSVQEAT 235


>ref|YP_001757220.1| transcriptional regulator domain-containing protein
           [Methylobacterium radiotolerans JCM 2831]
 gb|ACB26537.1| transcriptional regulator domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 525

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 83/109 (76%)

Query: 1   LTYHFNDLTLDSERRELRRGDALVAVEPQVFDLIEFLIRARDRVVSRDEVLAAVWHGRIV 60
           + Y F   TLDS RREL R  A +AVEPQVFDL+  LI  RDRVVSRD++L AVW+GRIV
Sbjct: 1   MIYRFGPFTLDSARRELSRDGAEIAVEPQVFDLLRVLIERRDRVVSRDDLLEAVWNGRIV 60

Query: 61  SEATLSSRINAARTAIGDNGEEQRLIRTLPRKGLRFVGDIREDTAPDRP 109
           SEATL SRINAARTAIGD G  QR IRTLPRKG+RFVG +RE  +   P
Sbjct: 61  SEATLGSRINAARTAIGDTGTGQRWIRTLPRKGVRFVGAVREAASEVSP 109