BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0137.0006.p         (122 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001205721.1| hypothetical protein BRADO3724 [Bradyrhizobi...   205   2e-51
ref|YP_001239738.1| hypothetical protein BBta_3754 [Bradyrhizobi...   203   8e-51
ref|YP_576948.1| hypothetical protein Nham_1671 [Nitrobacter ham...   182   2e-44
ref|YP_318644.1| hypothetical protein Nwi_2033 [Nitrobacter wino...   181   3e-44
ref|NP_770675.1| hypothetical protein blr4035 [Bradyrhizobium ja...   181   4e-44

>ref|YP_001205721.1| hypothetical protein BRADO3724 [Bradyrhizobium sp. ORS 278]
 emb|CAL77495.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 118

 Score =  205 bits (521), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/116 (82%), Positives = 104/116 (89%)

Query: 1   LTITIYGIKNCDTMKKARNWLDDHGVAYDFHDYKTAGIAKDKLKQWSDEVGWETLLNRAG 60
           ++ITIYGIK CDTMKKAR WLD+HG+AYDFHDYKTAGI K KLK WSDE+GWE LLNRAG
Sbjct: 1   MSITIYGIKTCDTMKKARAWLDEHGIAYDFHDYKTAGIDKAKLKAWSDELGWEVLLNRAG 60

Query: 61  TTFKKLPDADKEGLNERKALALMAEQPSMIKRPVLDLGGKRMVGFKPDIYAKEVPA 116
           TTFKKLPDADKEGL E +A+ALM  QPSMIKRPVLDLGGKR+VGFKPD YAKEV A
Sbjct: 61  TTFKKLPDADKEGLTESRAIALMVAQPSMIKRPVLDLGGKRVVGFKPDTYAKEVKA 116


>ref|YP_001239738.1| hypothetical protein BBta_3754 [Bradyrhizobium sp. BTAi1]
 gb|ABQ35832.1| hypothetical protein BBta_3754 [Bradyrhizobium sp. BTAi1]
          Length = 118

 Score =  203 bits (516), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 96/114 (84%), Positives = 104/114 (91%)

Query: 1   LTITIYGIKNCDTMKKARNWLDDHGVAYDFHDYKTAGIAKDKLKQWSDEVGWETLLNRAG 60
           ++ITIYGIKNCDTMKKAR WLDDHGVAYDFHDYKTAGI K  LK WSDEVGWE LLNRAG
Sbjct: 1   MSITIYGIKNCDTMKKARAWLDDHGVAYDFHDYKTAGIDKATLKTWSDEVGWELLLNRAG 60

Query: 61  TTFKKLPDADKEGLNERKALALMAEQPSMIKRPVLDLGGKRMVGFKPDIYAKEV 114
           TTFKKLPDADKEGL + KA+ALM  QPSMIKRPVLDLGG+R+VGFKP+IYAK+V
Sbjct: 61  TTFKKLPDADKEGLTDAKAIALMLAQPSMIKRPVLDLGGRRIVGFKPEIYAKDV 114


>ref|YP_576948.1| hypothetical protein Nham_1671 [Nitrobacter hamburgensis X14]
 gb|ABE62488.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 121

 Score =  182 bits (461), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/121 (70%), Positives = 101/121 (83%)

Query: 1   LTITIYGIKNCDTMKKARNWLDDHGVAYDFHDYKTAGIAKDKLKQWSDEVGWETLLNRAG 60
           +TITIYGIKNCDTMKKAR WLD H +AYDFHDYKTAG+ + +LK W+ ++GWETLLNRAG
Sbjct: 1   MTITIYGIKNCDTMKKARAWLDGHSIAYDFHDYKTAGVDRARLKGWAAKLGWETLLNRAG 60

Query: 61  TTFKKLPDADKEGLNERKALALMAEQPSMIKRPVLDLGGKRMVGFKPDIYAKEVPAKARK 120
           TTF+KL DADK GLNE KALALM  QPSMIKRPVL+ G K +VGFKP++Y +E+ A   K
Sbjct: 61  TTFRKLSDADKAGLNETKALALMLAQPSMIKRPVLEAGDKLLVGFKPEVYEEELRAPKTK 120

Query: 121 K 121
           +
Sbjct: 121 R 121


>ref|YP_318644.1| hypothetical protein Nwi_2033 [Nitrobacter winogradskyi Nb-255]
 gb|ABA05292.1| Conserved hypothetical protein ArsC related protein [Nitrobacter
           winogradskyi Nb-255]
          Length = 121

 Score =  181 bits (459), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 87/121 (71%), Positives = 101/121 (83%), Gaps = 1/121 (0%)

Query: 1   LTITIYGIKNCDTMKKARNWLDDHGVAYDFHDYKTAGIAKDKLKQWSDEVGWETLLNRAG 60
           +T TIYGIKNCDTMKKAR WLDDHGVAYDFHDYKTAGI   +LK W+ ++GWE LLNRAG
Sbjct: 1   MTTTIYGIKNCDTMKKARAWLDDHGVAYDFHDYKTAGIDGVRLKGWAAKLGWEALLNRAG 60

Query: 61  TTFKKLPDADKEGLNERKALALMAEQPSMIKRPVLDLGGKRMVGFKPDIYAKEV-PAKAR 119
           TTF+KLPDA K GL E +ALALM EQPSMIKRPVL+ G K +VGFKPDIY +++ P K +
Sbjct: 61  TTFRKLPDAKKAGLTEARALALMMEQPSMIKRPVLEAGDKLLVGFKPDIYEEQLRPLKVK 120

Query: 120 K 120
           +
Sbjct: 121 R 121


>ref|NP_770675.1| hypothetical protein blr4035 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49300.1| blr4035 [Bradyrhizobium japonicum USDA 110]
          Length = 104

 Score =  181 bits (458), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 85/104 (81%), Positives = 95/104 (91%)

Query: 14  MKKARNWLDDHGVAYDFHDYKTAGIAKDKLKQWSDEVGWETLLNRAGTTFKKLPDADKEG 73
           MKKAR WLD HGVAY+FHDYKTAG+ KDKLKQWSD++GWE LLNRAGTTFKKLPD+D+EG
Sbjct: 1   MKKARAWLDSHGVAYEFHDYKTAGVEKDKLKQWSDKLGWEILLNRAGTTFKKLPDSDREG 60

Query: 74  LNERKALALMAEQPSMIKRPVLDLGGKRMVGFKPDIYAKEVPAK 117
           L E+KALALM  QPSMIKRPVL++GGK +VGFKPDIYAKEV AK
Sbjct: 61  LTEKKALALMLAQPSMIKRPVLEVGGKLLVGFKPDIYAKEVRAK 104