BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0136.0004.p (401 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_766784.1| substrate-binding protein [Bradyrhizobium japon... 697 0.0 ref|YP_001243295.1| putative ABC transporter substrate binding p... 696 0.0 ref|YP_001202816.1| putative ABC transporter substrate binding p... 687 0.0 ref|YP_567416.1| putative ureA/short-chain amide ABC transporter... 679 0.0 ref|ZP_08627569.1| ABC transporter substrate-binding protein [Br... 677 0.0 >ref|NP_766784.1| substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC45409.1| substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 401 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/401 (86%), Positives = 374/401 (93%) Query: 1 MRRVLAGVLACAFAISANASLAQDKPPLKLGGILDMSSLYADITGSGSETAAKMAVEDFG 60 M R+L G+ A A A+SA+A A+DKPPLK+GGILDMSSLYADITG GSETAAKMA EDFG Sbjct: 1 MTRILPGIFAAALALSASAVQAEDKPPLKIGGILDMSSLYADITGPGSETAAKMAAEDFG 60 Query: 61 GEVLGRKVEIVVGDHLNKADLSANIARDMIDNQGVEMIFDVAASATALAAAEIAKARNKI 120 GEVLGRK++++ DHLNKADLSANIARDM+DNQGVEMI+DVAASATALAA EIAKARNKI Sbjct: 61 GEVLGRKIQVLAADHLNKADLSANIARDMLDNQGVEMIYDVAASATALAAGEIAKARNKI 120 Query: 121 IMFNGPGSIRLSNEACGPYTVHYVFDTFAQANVTGLAAVKSGLDTWFFLTADYAFGQDLE 180 IMFNGPGSIRL+NEACGPYTVHYVFDT+ QANVTGLAAVKSGLDTWFFLTADYAFGQDLE Sbjct: 121 IMFNGPGSIRLTNEACGPYTVHYVFDTYGQANVTGLAAVKSGLDTWFFLTADYAFGQDLE 180 Query: 181 KDTSNVVVKSGGKVLGSVRHPINTSDFSSFLLQAQASKAKVIGLANAGGDTINAIKQAAE 240 KDTS VV K+GGKVLG VRHP+NTSDFSSFLLQAQASKAKVIGLANAGGDT+NAIKQAAE Sbjct: 181 KDTSAVVTKTGGKVLGGVRHPLNTSDFSSFLLQAQASKAKVIGLANAGGDTVNAIKQAAE 240 Query: 241 FGLTKSGQKLSPLLAFVTDIDSVGLDTAQGLLLAEAFYWDLNDDSRAFTKRFMERTKRVP 300 FG+TK GQK+SPLLAFVTDIDS+GL+TAQGLLLAEAFYWDLNDD+RAF+KRF ER KR P Sbjct: 241 FGITKGGQKVSPLLAFVTDIDSIGLETAQGLLLAEAFYWDLNDDTRAFSKRFTERMKRPP 300 Query: 301 TSAQAGVYSSVTHYLKAVKAAGTTDAAAVMKVMKETPINDMFTKNGKIREDGRMVHDMYL 360 TSAQAGVYSSVTHYLKAVKAAGTTDAAAV+KVMKETPIND F K GKIREDGRM+HDMYL Sbjct: 301 TSAQAGVYSSVTHYLKAVKAAGTTDAAAVIKVMKETPINDFFAKGGKIREDGRMIHDMYL 360 Query: 361 FEVKKPSESKGRWDDYKLVATVSGDQAFQPLSESRCPLVKK 401 FEVKKPSESKGRWDDYKL+ATV G +AFQ L +SRCPLVKK Sbjct: 361 FEVKKPSESKGRWDDYKLLATVPGSEAFQSLEQSRCPLVKK 401 >ref|YP_001243295.1| putative ABC transporter substrate binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ39389.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Bradyrhizobium sp. BTAi1] Length = 394 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/394 (87%), Positives = 369/394 (93%) Query: 8 VLACAFAISANASLAQDKPPLKLGGILDMSSLYADITGSGSETAAKMAVEDFGGEVLGRK 67 +LA A +S A+ AQ K PLK+GGILDMSSLYADITG GSETAAKMAVEDFGGEVLGRK Sbjct: 1 MLASALTLSVGAAHAQSKTPLKIGGILDMSSLYADITGPGSETAAKMAVEDFGGEVLGRK 60 Query: 68 VEIVVGDHLNKADLSANIARDMIDNQGVEMIFDVAASATALAAAEIAKARNKIIMFNGPG 127 +E++ DHLNKADL+ANIARDM+DNQGVEMI+DVAASATALAA EIAKARNKII+FNGPG Sbjct: 61 IEVLAADHLNKADLAANIARDMLDNQGVEMIYDVAASATALAAGEIAKARNKIIIFNGPG 120 Query: 128 SIRLSNEACGPYTVHYVFDTFAQANVTGLAAVKSGLDTWFFLTADYAFGQDLEKDTSNVV 187 S+RLSNEACGPYTVHYVFDTFAQANVTGLAAVKSGLD+WFFLTADYAFGQDLEKDT+ VV Sbjct: 121 SVRLSNEACGPYTVHYVFDTFAQANVTGLAAVKSGLDSWFFLTADYAFGQDLEKDTTAVV 180 Query: 188 VKSGGKVLGSVRHPINTSDFSSFLLQAQASKAKVIGLANAGGDTINAIKQAAEFGLTKSG 247 VKSGGKVLGSVRHP+NTSDFSSFLLQAQASKAKVIGLANAGGDTINAIKQAAEFGLTK G Sbjct: 181 VKSGGKVLGSVRHPLNTSDFSSFLLQAQASKAKVIGLANAGGDTINAIKQAAEFGLTKGG 240 Query: 248 QKLSPLLAFVTDIDSVGLDTAQGLLLAEAFYWDLNDDSRAFTKRFMERTKRVPTSAQAGV 307 QKLSPLLAFV+DIDSVGL+TAQGLL+AEAFYWDLND++RAFTKRFMERTKRVPTSAQAGV Sbjct: 241 QKLSPLLAFVSDIDSVGLETAQGLLVAEAFYWDLNDETRAFTKRFMERTKRVPTSAQAGV 300 Query: 308 YSSVTHYLKAVKAAGTTDAAAVMKVMKETPINDMFTKNGKIREDGRMVHDMYLFEVKKPS 367 YSSVTHYLKAVKAAGTTD AVMKVM+ TPINDMF K G+IREDGRMVHDMYLFEVKKPS Sbjct: 301 YSSVTHYLKAVKAAGTTDPDAVMKVMRATPINDMFAKGGRIREDGRMVHDMYLFEVKKPS 360 Query: 368 ESKGRWDDYKLVATVSGDQAFQPLSESRCPLVKK 401 ESK + DDYKL+ATV G++AFQ L SRCPLVKK Sbjct: 361 ESKAKSDDYKLLATVPGNEAFQSLELSRCPLVKK 394 >ref|YP_001202816.1| putative ABC transporter substrate binding protein [Bradyrhizobium sp. ORS 278] emb|CAL74576.1| putative ABC transporter (substrate binding protein) [Bradyrhizobium sp. ORS 278] Length = 394 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/379 (88%), Positives = 362/379 (95%) Query: 23 QDKPPLKLGGILDMSSLYADITGSGSETAAKMAVEDFGGEVLGRKVEIVVGDHLNKADLS 82 Q KPPLK+GGILDMSSLYADITG GSE AAKMAVEDFGGEVLGRK+E++ DHLNKADL+ Sbjct: 16 QSKPPLKIGGILDMSSLYADITGPGSEAAAKMAVEDFGGEVLGRKIEVIAADHLNKADLA 75 Query: 83 ANIARDMIDNQGVEMIFDVAASATALAAAEIAKARNKIIMFNGPGSIRLSNEACGPYTVH 142 ANIARDM+DNQGVEMI+DVAASATALAA EIAKARNKII+FNGPGS+RLSNEACGPYTVH Sbjct: 76 ANIARDMLDNQGVEMIWDVAASATALAAGEIAKARNKIIIFNGPGSVRLSNEACGPYTVH 135 Query: 143 YVFDTFAQANVTGLAAVKSGLDTWFFLTADYAFGQDLEKDTSNVVVKSGGKVLGSVRHPI 202 YVFDTFAQANVTGLAAVKSGLD+WFFLTADYAFGQDLEKDTS VVVKSGGKVLGSVRHP+ Sbjct: 136 YVFDTFAQANVTGLAAVKSGLDSWFFLTADYAFGQDLEKDTSAVVVKSGGKVLGSVRHPL 195 Query: 203 NTSDFSSFLLQAQASKAKVIGLANAGGDTINAIKQAAEFGLTKSGQKLSPLLAFVTDIDS 262 NTSDFSSFLLQAQASKAKVIGLANAGGDTINAIKQAAEFG++KSGQKLSPLLAFV+DIDS Sbjct: 196 NTSDFSSFLLQAQASKAKVIGLANAGGDTINAIKQAAEFGISKSGQKLSPLLAFVSDIDS 255 Query: 263 VGLDTAQGLLLAEAFYWDLNDDSRAFTKRFMERTKRVPTSAQAGVYSSVTHYLKAVKAAG 322 VGL+TAQGLL+AEAFYWDLNDD+RAFTKRFMERT+RVPTSAQAGVYSSVTHYL+AVKAAG Sbjct: 256 VGLETAQGLLVAEAFYWDLNDDTRAFTKRFMERTRRVPTSAQAGVYSSVTHYLQAVKAAG 315 Query: 323 TTDAAAVMKVMKETPINDMFTKNGKIREDGRMVHDMYLFEVKKPSESKGRWDDYKLVATV 382 TTD AVMK+M+ TPINDMF K G+IREDGRMVHDMYLFEVKKPSESKG+ DDYKL+ATV Sbjct: 316 TTDPDAVMKLMRATPINDMFAKGGRIREDGRMVHDMYLFEVKKPSESKGKSDDYKLLATV 375 Query: 383 SGDQAFQPLSESRCPLVKK 401 G++AFQ L SRCPLVKK Sbjct: 376 PGNEAFQSLELSRCPLVKK 394 >ref|YP_567416.1| putative ureA/short-chain amide ABC transporter [Rhodopseudomonas palustris BisB5] gb|ABE37515.1| putative ureA/short-chain amide ABC transporter [Rhodopseudomonas palustris BisB5] Length = 401 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/401 (83%), Positives = 366/401 (91%) Query: 1 MRRVLAGVLACAFAISANASLAQDKPPLKLGGILDMSSLYADITGSGSETAAKMAVEDFG 60 M+ + + AC + +A+ AQ +PPLKLG ILDMS LYADITG GSE AAKMAVEDFG Sbjct: 1 MKAIRIALFACLSITAISAAQAQSQPPLKLGAILDMSGLYADITGPGSEAAAKMAVEDFG 60 Query: 61 GEVLGRKVEIVVGDHLNKADLSANIARDMIDNQGVEMIFDVAASATALAAAEIAKARNKI 120 G VLGRK+EIVV DHLNKADLSANIARDM+DNQGVE I DVAASATALAAAEIAKAR KI Sbjct: 61 GTVLGRKIEIVVADHLNKADLSANIARDMLDNQGVEAIIDVAASATALAAAEIAKARGKI 120 Query: 121 IMFNGPGSIRLSNEACGPYTVHYVFDTFAQANVTGLAAVKSGLDTWFFLTADYAFGQDLE 180 IMF+GPGSIRLSNEACGPYTVHYVFDTFAQAN TGLAAVK GLD+WFFL+ADYAFGQDLE Sbjct: 121 IMFSGPGSIRLSNEACGPYTVHYVFDTFAQANTTGLAAVKQGLDSWFFLSADYAFGQDLE 180 Query: 181 KDTSNVVVKSGGKVLGSVRHPINTSDFSSFLLQAQASKAKVIGLANAGGDTINAIKQAAE 240 +DTSNV+ SGGKVLG+V+HPINTSDFSSFLLQAQ+SKAKV+GLANAGGDTINAIKQAAE Sbjct: 181 RDTSNVIKASGGKVLGNVKHPINTSDFSSFLLQAQSSKAKVVGLANAGGDTINAIKQAAE 240 Query: 241 FGLTKSGQKLSPLLAFVTDIDSVGLDTAQGLLLAEAFYWDLNDDSRAFTKRFMERTKRVP 300 FG+ K GQKLSPLLAF++DIDSVGLDTAQGL+LAEAFYWDLNDD+RAF+KRFMERTKRVP Sbjct: 241 FGIAKGGQKLSPLLAFISDIDSVGLDTAQGLILAEAFYWDLNDDTRAFSKRFMERTKRVP 300 Query: 301 TSAQAGVYSSVTHYLKAVKAAGTTDAAAVMKVMKETPINDMFTKNGKIREDGRMVHDMYL 360 TS QAG+YS HYL+AVKAAGTTDAAAVMK MKETPIND F KNG+IREDGRMVHDMYL Sbjct: 301 TSVQAGLYSETMHYLQAVKAAGTTDAAAVMKKMKETPINDFFAKNGRIREDGRMVHDMYL 360 Query: 361 FEVKKPSESKGRWDDYKLVATVSGDQAFQPLSESRCPLVKK 401 FE+KKPSESKGRWD+YKL+ATV GDQAFQPLSESRCPLVKK Sbjct: 361 FEIKKPSESKGRWDNYKLLATVPGDQAFQPLSESRCPLVKK 401 >ref|ZP_08627569.1| ABC transporter substrate-binding protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09823.1| ABC transporter substrate-binding protein [Bradyrhizobiaceae bacterium SG-6C] Length = 421 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/401 (82%), Positives = 362/401 (90%) Query: 1 MRRVLAGVLACAFAISANASLAQDKPPLKLGGILDMSSLYADITGSGSETAAKMAVEDFG 60 ++++LA +L+ + + A+LAQ KPPLKLG ILDMS LYADITG GSETAAKMAVEDFG Sbjct: 21 LKKILATLLSSVVVLGSGAALAQGKPPLKLGAILDMSGLYADITGPGSETAAKMAVEDFG 80 Query: 61 GEVLGRKVEIVVGDHLNKADLSANIARDMIDNQGVEMIFDVAASATALAAAEIAKARNKI 120 GEVLGRK+EI+ DHLNKADLS++IARDM DNQGVE I DVAASATALAA EIAKARNKI Sbjct: 81 GEVLGRKIEIIAADHLNKADLSSSIARDMFDNQGVEAIIDVAASATALAANEIAKARNKI 140 Query: 121 IMFNGPGSIRLSNEACGPYTVHYVFDTFAQANVTGLAAVKSGLDTWFFLTADYAFGQDLE 180 I+FNGPGSIRL+NEACGPYTVHYVFDTF QAN TGLAAVK+GLDTWFFL ADYAFGQDLE Sbjct: 141 IIFNGPGSIRLTNEACGPYTVHYVFDTFGQANSTGLAAVKAGLDTWFFLQADYAFGQDLE 200 Query: 181 KDTSNVVVKSGGKVLGSVRHPINTSDFSSFLLQAQASKAKVIGLANAGGDTINAIKQAAE 240 KDTS VV K GGKVLG+V+HP+NTSDFSSFLLQAQ+SKAKVIGLANAGGDTINAIKQ AE Sbjct: 201 KDTSAVVNKMGGKVLGTVKHPLNTSDFSSFLLQAQSSKAKVIGLANAGGDTINAIKQGAE 260 Query: 241 FGLTKSGQKLSPLLAFVTDIDSVGLDTAQGLLLAEAFYWDLNDDSRAFTKRFMERTKRVP 300 FGL K GQK+SPLLAFVTDIDS+GL+TAQGL+LAEA+YWDLNDD+RAF+KRFME+ KR P Sbjct: 261 FGLMKGGQKMSPLLAFVTDIDSIGLETAQGLVLAEAWYWDLNDDTRAFSKRFMEKIKRAP 320 Query: 301 TSAQAGVYSSVTHYLKAVKAAGTTDAAAVMKVMKETPINDMFTKNGKIREDGRMVHDMYL 360 TSAQAGVYSSV HYLKAVK AGTTD+AAVMK+MK TPINDMF K GKIREDGRMVHDMYL Sbjct: 321 TSAQAGVYSSVLHYLKAVKQAGTTDSAAVMKIMKSTPINDMFAKGGKIREDGRMVHDMYL 380 Query: 361 FEVKKPSESKGRWDDYKLVATVSGDQAFQPLSESRCPLVKK 401 FEVKKPSESK RWDDYKL+AT+ GDQAFQ L SRCP +KK Sbjct: 381 FEVKKPSESKARWDDYKLLATIPGDQAFQSLDASRCPFIKK 421