BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0135.0014.p (428 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768956.1| NADH-ubiquinone oxidoreductase chain F [Bradyrh... 744 0.0 ref|ZP_07027993.1| Respiratory-chain NADH dehydrogenase domain 5... 736 0.0 ref|YP_002289679.1| tungsten-containing formate dehydrogenase be... 730 0.0 ref|ZP_08628858.1| tungsten-containing formate dehydrogenase bet... 719 0.0 ref|YP_001770106.1| respiratory-chain NADH dehydrogenase domain-... 666 0.0 >ref|NP_768956.1| NADH-ubiquinone oxidoreductase chain F [Bradyrhizobium japonicum USDA 110] dbj|BAC47581.1| blr2316 [Bradyrhizobium japonicum USDA 110] Length = 567 Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/420 (84%), Positives = 383/420 (91%) Query: 1 VAAHEIEALLADRPRRRDLLIEYLHLIQDKYHQISAAHLAALADEMKLSFAEVFETATFY 60 AAHEIE LL DRPRRRDLLIEYLHLIQDKYHQISAAHLAALADEMKL+FAEVFETATFY Sbjct: 33 TAAHEIEQLLGDRPRRRDLLIEYLHLIQDKYHQISAAHLAALADEMKLAFAEVFETATFY 92 Query: 61 AHFDIVKEGEPDIAPLTVRVCDSLTCAMLGGEQLLKDLQNRAGPGIRVVRAPCVGRCDTA 120 AHFDIVKEGEPDIAPLT+RVCDSLTC MLGG QLL+DLQ AGPGIRVVRAPCVG CD A Sbjct: 93 AHFDIVKEGEPDIAPLTIRVCDSLTCEMLGGGQLLQDLQRSAGPGIRVVRAPCVGLCDAA 152 Query: 121 PAAEVGHNFVDHATVTNVLAAANNGDTHVHLPPYVDYDAYVAGGGYQLLARLRSGELPRE 180 P AEVGH+FV AT VLA A GD H H+P YVDYDAYV GGY+LL RLRSG + ++ Sbjct: 153 PVAEVGHHFVHQATAAEVLATAARGDVHAHIPAYVDYDAYVQDGGYKLLERLRSGAVSKD 212 Query: 181 NLLKALDDASLRGLGGAGFPTGRKWRAVLGEPGPRLMAVNGDEGEPGTFKDRYYLETDPH 240 ++L+ L+D+SLRGLGGAGFPTGRKWRAVLGEPGPRLMAVNGDEGEPGTFKDR YL DPH Sbjct: 213 DILRLLEDSSLRGLGGAGFPTGRKWRAVLGEPGPRLMAVNGDEGEPGTFKDRVYLNNDPH 272 Query: 241 RFLEGMLIGAHVVEAPEVYIYIRDEYPACRDILAREIAKLPPGGPTLHLRRGAGAYICGE 300 RF+EG LIGAH+VEA +VYIYIRDEYPA R+IL REIAKLPPGGPTLH+RRGAGAYICGE Sbjct: 273 RFIEGTLIGAHIVEASDVYIYIRDEYPAAREILEREIAKLPPGGPTLHMRRGAGAYICGE 332 Query: 301 ESSLLESIEGKRGLPRHKPPYPFQVGLFGLPTLINNIETLWWVRDVVEKGADWWKSHGRN 360 ESSLLESIEGKRGLPRHKPPYPFQVGLFGLPTLINN+ETLWWVRD+VEKGADWWK HGR+ Sbjct: 333 ESSLLESIEGKRGLPRHKPPYPFQVGLFGLPTLINNVETLWWVRDIVEKGADWWKGHGRH 392 Query: 361 ERHGLRSFSVSGRVKDPGVKLAPAGITLRELIDEFCGGMADGHTLQAYLPGGASGGILPA 420 ERHGLRSFSVSGRVK+PG+KLAP+GIT+RELIDE+CGGMADGHT AYLPGGASGGILPA Sbjct: 393 ERHGLRSFSVSGRVKNPGMKLAPSGITVRELIDEYCGGMADGHTFYAYLPGGASGGILPA 452 >ref|ZP_07027993.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia sp. 1NLS2] gb|EFI50814.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia sp. 1NLS2] Length = 745 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/419 (82%), Positives = 388/419 (92%) Query: 2 AAHEIEALLADRPRRRDLLIEYLHLIQDKYHQISAAHLAALADEMKLSFAEVFETATFYA 61 A+ EIE LL + RRRD+LIEYLHLIQDK+ QISAAHLAALADEMKL+FAEVFE ATFYA Sbjct: 210 ASEEIEFLLEGKSRRRDMLIEYLHLIQDKWGQISAAHLAALADEMKLAFAEVFEVATFYA 269 Query: 62 HFDIVKEGEPDIAPLTVRVCDSLTCAMLGGEQLLKDLQNRAGPGIRVVRAPCVGRCDTAP 121 HFD+VKEG PDIAP+T+RVCDSLTCAMLG E L+K+L+N+AGPG+RVVRAPCVGRCDTAP Sbjct: 270 HFDVVKEGAPDIAPVTIRVCDSLTCAMLGAETLMKELKNKAGPGVRVVRAPCVGRCDTAP 329 Query: 122 AAEVGHNFVDHATVTNVLAAANNGDTHVHLPPYVDYDAYVAGGGYQLLARLRSGELPREN 181 AAEVGHNFVDHATV NVLAA DTHVH+P YV+Y++Y+A GGY LL LRSG+ +E+ Sbjct: 330 AAEVGHNFVDHATVDNVLAALKQHDTHVHVPDYVEYESYIAQGGYTLLNSLRSGKTSKED 389 Query: 182 LLKALDDASLRGLGGAGFPTGRKWRAVLGEPGPRLMAVNGDEGEPGTFKDRYYLETDPHR 241 +LKAL+ ASLRGLGGAGFPTGRKWRAVLGEPGPRLMA+NGDEGEPGTFKDR+YLETDPHR Sbjct: 390 ILKALESASLRGLGGAGFPTGRKWRAVLGEPGPRLMAINGDEGEPGTFKDRFYLETDPHR 449 Query: 242 FLEGMLIGAHVVEAPEVYIYIRDEYPACRDILAREIAKLPPGGPTLHLRRGAGAYICGEE 301 F+EGMLIGAH+VEA EVYIY+RDEYPA R+ILAREIA+LP GGPTLHLRRGAGAYICGEE Sbjct: 450 FIEGMLIGAHIVEAAEVYIYLRDEYPASREILAREIARLPAGGPTLHLRRGAGAYICGEE 509 Query: 302 SSLLESIEGKRGLPRHKPPYPFQVGLFGLPTLINNIETLWWVRDVVEKGADWWKSHGRNE 361 S+LLESIEGKRG+PRHKPPYPFQVGLFGLPTLINN+ETLWWVRD+VEKG +WW++ GRN+ Sbjct: 510 SALLESIEGKRGMPRHKPPYPFQVGLFGLPTLINNVETLWWVRDIVEKGGEWWQAQGRND 569 Query: 362 RHGLRSFSVSGRVKDPGVKLAPAGITLRELIDEFCGGMADGHTLQAYLPGGASGGILPA 420 RHGLRS+SVSGRVK+PGVKLAPAG+T+ ELI+EFCGGMADGH +AYLPGGASGGILPA Sbjct: 570 RHGLRSYSVSGRVKNPGVKLAPAGVTITELIEEFCGGMADGHKFRAYLPGGASGGILPA 628 >ref|YP_002289679.1| tungsten-containing formate dehydrogenase beta subunit [Oligotropha carboxidovorans OM5] ref|YP_004632322.1| NADH-quinone oxidoreductase subunit F [Oligotropha carboxidovorans OM5] gb|ACI93814.1| tungsten-containing formate dehydrogenase beta subunit [Oligotropha carboxidovorans OM5] gb|AEI02505.1| NADH-quinone oxidoreductase subunit F [Oligotropha carboxidovorans OM4] gb|AEI06081.1| NADH-quinone oxidoreductase subunit F [Oligotropha carboxidovorans OM5] Length = 570 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/419 (82%), Positives = 385/419 (91%) Query: 2 AAHEIEALLADRPRRRDLLIEYLHLIQDKYHQISAAHLAALADEMKLSFAEVFETATFYA 61 A+ EIE LLA + RRD+LIE+LHLIQDK+ QISAAHLAALADEMKLSF EVFE ATFYA Sbjct: 35 ASGEIEELLAGKSHRRDMLIEHLHLIQDKWGQISAAHLAALADEMKLSFPEVFEVATFYA 94 Query: 62 HFDIVKEGEPDIAPLTVRVCDSLTCAMLGGEQLLKDLQNRAGPGIRVVRAPCVGRCDTAP 121 HFD+VKEGEPDI PLT+RVCDSLTCAMLG + L+K+LQN+AGP +RVVRAPCVGRCD AP Sbjct: 95 HFDVVKEGEPDIPPLTIRVCDSLTCAMLGADTLMKELQNKAGPEVRVVRAPCVGRCDHAP 154 Query: 122 AAEVGHNFVDHATVTNVLAAANNGDTHVHLPPYVDYDAYVAGGGYQLLARLRSGELPREN 181 AEVGHNF+D AT VLAAA+ GDTH H+P Y++YD+YVA GGY LL LRSG+ +E+ Sbjct: 155 VAEVGHNFIDEATPAKVLAAADEGDTHAHVPDYIEYDSYVAQGGYALLNSLRSGQTSKED 214 Query: 182 LLKALDDASLRGLGGAGFPTGRKWRAVLGEPGPRLMAVNGDEGEPGTFKDRYYLETDPHR 241 +LKALD ASLRGLGGAGFPTGRKWRAV+GEPGPRLMAVNGDEGEPGTFKDR+YLETDPHR Sbjct: 215 ILKALDGASLRGLGGAGFPTGRKWRAVMGEPGPRLMAVNGDEGEPGTFKDRFYLETDPHR 274 Query: 242 FLEGMLIGAHVVEAPEVYIYIRDEYPACRDILAREIAKLPPGGPTLHLRRGAGAYICGEE 301 FLEGMLIGAH+V+A EVYIY+RDEYPA R+ILAREIAKLPPGGPTLHLRRGAGAYICGEE Sbjct: 275 FLEGMLIGAHIVDAGEVYIYLRDEYPASREILAREIAKLPPGGPTLHLRRGAGAYICGEE 334 Query: 302 SSLLESIEGKRGLPRHKPPYPFQVGLFGLPTLINNIETLWWVRDVVEKGADWWKSHGRNE 361 SSLLESIEGKRGLPRHKPPYPFQVGLFGLPTLINN+ETLWWVRD+V+KG DWW+SHGRNE Sbjct: 335 SSLLESIEGKRGLPRHKPPYPFQVGLFGLPTLINNVETLWWVRDIVQKGGDWWQSHGRNE 394 Query: 362 RHGLRSFSVSGRVKDPGVKLAPAGITLRELIDEFCGGMADGHTLQAYLPGGASGGILPA 420 RHGLRS+SVSGRVK+PGVKLAPAG+T++ELI+EFC GMADGH +AYLPGGASGGILPA Sbjct: 395 RHGLRSYSVSGRVKNPGVKLAPAGVTIKELIEEFCDGMADGHQFRAYLPGGASGGILPA 453 >ref|ZP_08628858.1| tungsten-containing formate dehydrogenase beta subunit [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08217.1| tungsten-containing formate dehydrogenase beta subunit [Bradyrhizobiaceae bacterium SG-6C] Length = 529 Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/412 (84%), Positives = 385/412 (93%) Query: 9 LLADRPRRRDLLIEYLHLIQDKYHQISAAHLAALADEMKLSFAEVFETATFYAHFDIVKE 68 +L DRP RRD+LIE+LHLIQDKY+QISAAHLAALAD MKL+F+EVFETATFYAHFD+VKE Sbjct: 1 MLGDRPLRRDMLIEHLHLIQDKYNQISAAHLAALADAMKLAFSEVFETATFYAHFDVVKE 60 Query: 69 GEPDIAPLTVRVCDSLTCAMLGGEQLLKDLQNRAGPGIRVVRAPCVGRCDTAPAAEVGHN 128 G+PD+ PLT+RVCDSLTCAMLG E LL +L+ +AGPG+RVVRAPCVGRCDTAPAAEVGHN Sbjct: 61 GQPDLPPLTIRVCDSLTCAMLGAEALLGELKKKAGPGVRVVRAPCVGRCDTAPAAEVGHN 120 Query: 129 FVDHATVTNVLAAANNGDTHVHLPPYVDYDAYVAGGGYQLLARLRSGELPRENLLKALDD 188 FVDHA+ VLA A++GDTH HLP Y+DYDAYVA GGY LL +LR+GE+ +E+LL+ALD+ Sbjct: 121 FVDHASADKVLAVADSGDTHAHLPSYIDYDAYVAKGGYALLRKLRAGEMSKEDLLQALDE 180 Query: 189 ASLRGLGGAGFPTGRKWRAVLGEPGPRLMAVNGDEGEPGTFKDRYYLETDPHRFLEGMLI 248 ASLRGLGGAGFPTGRKWRAVLGEPGPRLMA+NGDEGEPGTFKDRYYLETDPHRF+EGMLI Sbjct: 181 ASLRGLGGAGFPTGRKWRAVLGEPGPRLMAINGDEGEPGTFKDRYYLETDPHRFIEGMLI 240 Query: 249 GAHVVEAPEVYIYIRDEYPACRDILAREIAKLPPGGPTLHLRRGAGAYICGEESSLLESI 308 GAHVV+APEVYIY+RDEYPA R+I+AREIAKLPPGGP LHLRRGAGAYICGEES+LLESI Sbjct: 241 GAHVVDAPEVYIYLRDEYPAAREIIAREIAKLPPGGPVLHLRRGAGAYICGEESALLESI 300 Query: 309 EGKRGLPRHKPPYPFQVGLFGLPTLINNIETLWWVRDVVEKGADWWKSHGRNERHGLRSF 368 EGKRGLPRHKPPYPFQVGLFGLPTLINNIETLWWVRD+VE GA WW GR+ERHGLRS+ Sbjct: 301 EGKRGLPRHKPPYPFQVGLFGLPTLINNIETLWWVRDIVENGASWWSHQGRHERHGLRSY 360 Query: 369 SVSGRVKDPGVKLAPAGITLRELIDEFCGGMADGHTLQAYLPGGASGGILPA 420 SVSGRVK+PG+KLAPAGIT+RELIDEFCGGMADGHT AYLPGGASGGILPA Sbjct: 361 SVSGRVKEPGMKLAPAGITVRELIDEFCGGMADGHTFHAYLPGGASGGILPA 412 >ref|YP_001770106.1| respiratory-chain NADH dehydrogenase domain-containing protein [Methylobacterium sp. 4-46] gb|ACA17672.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium sp. 4-46] Length = 572 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/419 (77%), Positives = 359/419 (85%) Query: 2 AAHEIEALLADRPRRRDLLIEYLHLIQDKYHQISAAHLAALADEMKLSFAEVFETATFYA 61 A EI ALL + PRRRDLLIE+LHL+QD Y QISA HLAALADEM L+FAEVFETATFYA Sbjct: 35 AKAEIAALLGEAPRRRDLLIEHLHLVQDTYGQISAPHLAALADEMGLAFAEVFETATFYA 94 Query: 62 HFDIVKEGEPDIAPLTVRVCDSLTCAMLGGEQLLKDLQNRAGPGIRVVRAPCVGRCDTAP 121 HFD+VKEGE I LTVRVCDSLTCAM G E+LL LQ G +RVVRAPCVG CD AP Sbjct: 95 HFDVVKEGEAAIPALTVRVCDSLTCAMHGAEELLAALQAEIGAQVRVVRAPCVGLCDHAP 154 Query: 122 AAEVGHNFVDHATVTNVLAAANNGDTHVHLPPYVDYDAYVAGGGYQLLARLRSGELPREN 181 AAEVGHNF+ ATV V AA GDTH HLP +D+DAY GGY+ L RLR+G+L E+ Sbjct: 155 AAEVGHNFLHRATVETVRAAVAAGDTHAHLPDTIDFDAYRDAGGYRTLERLRAGDLSVED 214 Query: 182 LLKALDDASLRGLGGAGFPTGRKWRAVLGEPGPRLMAVNGDEGEPGTFKDRYYLETDPHR 241 +LK LDD SLRGLGGAGFPTGRKWR+V GEPGPRLMAVNGDEGEPGTFKD+ YL TDPHR Sbjct: 215 VLKVLDDGSLRGLGGAGFPTGRKWRSVRGEPGPRLMAVNGDEGEPGTFKDQLYLNTDPHR 274 Query: 242 FLEGMLIGAHVVEAPEVYIYIRDEYPACRDILAREIAKLPPGGPTLHLRRGAGAYICGEE 301 FLEG LIGAHVVEA +VY+YIRDEYP R ILAREIAKLPPGGP LHLRRGAGAYICGEE Sbjct: 275 FLEGTLIGAHVVEAEDVYLYIRDEYPIARQILAREIAKLPPGGPRLHLRRGAGAYICGEE 334 Query: 302 SSLLESIEGKRGLPRHKPPYPFQVGLFGLPTLINNIETLWWVRDVVEKGADWWKSHGRNE 361 SSL+ESIEGKRGLPRHKPPYPFQVGLFG PTLINN+ETL+W+RD++E+G DWWKSHGRN Sbjct: 335 SSLIESIEGKRGLPRHKPPYPFQVGLFGRPTLINNVETLYWIRDLIERGPDWWKSHGRNG 394 Query: 362 RHGLRSFSVSGRVKDPGVKLAPAGITLRELIDEFCGGMADGHTLQAYLPGGASGGILPA 420 R GLRS+SVSGRV++PGVKLAPAG+T+RELI+EFCGGMA+GH AYLPGGASGGILPA Sbjct: 395 RTGLRSYSVSGRVREPGVKLAPAGVTIRELIEEFCGGMAEGHRFAAYLPGGASGGILPA 453