BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0134.0024.p (323 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767086.1| site-specific tyrosine recombinase XerC [Bradyr... 540 e-151 ref|NP_945535.1| site-specific tyrosine recombinase XerC [Rhodop... 526 e-147 ref|YP_567692.1| site-specific tyrosine recombinase XerC [Rhodop... 523 e-146 ref|YP_001989215.1| site-specific tyrosine recombinase XerC [Rho... 520 e-146 ref|YP_575886.1| site-specific tyrosine recombinase XerC [Nitrob... 520 e-146 >ref|NP_767086.1| site-specific tyrosine recombinase XerC [Bradyrhizobium japonicum USDA 110] sp|Q89X68.1|XERC_BRAJA RecName: Full=Tyrosine recombinase xerC dbj|BAC45711.1| xerC [Bradyrhizobium japonicum USDA 110] Length = 321 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 267/312 (85%), Positives = 284/312 (91%) Query: 11 LELDCADASVTQEMTRWLSHLRAERRLSPKTLEAYARDVRQCLAFLAGHWGARVTLKAFS 70 +EL AD S+ QEMTRWLSHL AERRLSPKTLEAY RD+RQCL FL HWG RVTLK F+ Sbjct: 9 IELASADPSIAQEMTRWLSHLGAERRLSPKTLEAYGRDLRQCLDFLCNHWGERVTLKRFA 68 Query: 71 ALEASDVRAFMAMRRTEEIGGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKVAKS 130 ALEA+DVRAFMAMRR ++I GRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKVAKS Sbjct: 69 ALEATDVRAFMAMRRADDIAGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKVAKS 128 Query: 131 LPKPIHMEAAKRFADADERADETRETWILVRDAAVMALLYGSGLRISEALGLKRRDVPKP 190 LPKP+ M +AKR ADADERA E RETWIL RDAAVMALLYGSGLRISEALGLKRR+VPKP Sbjct: 129 LPKPLPMASAKRLADADERAGEERETWILARDAAVMALLYGSGLRISEALGLKRREVPKP 188 Query: 191 GEGDVLVVTGKGNKTRMVPVLQNVLQLIADYAAICPHQLSPAGPVFVGARGGPLSPRIIQ 250 GEGDVLVVTGKGNKTRMVPVLQNVL L+ +Y ++CP+ L GP+FVGARGGPLSPRIIQ Sbjct: 189 GEGDVLVVTGKGNKTRMVPVLQNVLALVQEYVSMCPYPLPAEGPIFVGARGGPLSPRIIQ 248 Query: 251 LTMERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSE 310 L MERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGH+SLSTTQIYTGIDSE Sbjct: 249 LAMERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHSSLSTTQIYTGIDSE 308 Query: 311 RLLEVYRSAHPR 322 RLLEVY SAHPR Sbjct: 309 RLLEVYASAHPR 320 >ref|NP_945535.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris CGA009] emb|CAE25626.1| putative site-specific recombinase, INTEGRASE/RECOMBINASE RIPX (xerC) [Rhodopseudomonas palustris CGA009] Length = 371 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 260/322 (80%), Positives = 283/322 (87%) Query: 1 MARTDQPIQPLELDCADASVTQEMTRWLSHLRAERRLSPKTLEAYARDVRQCLAFLAGHW 60 MA + PLEL CA A +T EMT+WLSHLRAERRLS KTLEAYARDVRQ L FLAGHW Sbjct: 49 MAPSKSAPPPLELSCAAADLTAEMTKWLSHLRAERRLSGKTLEAYARDVRQFLQFLAGHW 108 Query: 61 GARVTLKAFSALEASDVRAFMAMRRTEEIGGRSLMRALAGLRSFGRFLEREGKGKVGALS 120 G VTL F+ LEA+DVRAFMA RR +EI GRSLMRALAG+RSFGRFLEREGKG+VGAL+ Sbjct: 109 GGEVTLGRFARLEATDVRAFMAARRADEIAGRSLMRALAGMRSFGRFLEREGKGRVGALA 168 Query: 121 AIRAPKVAKSLPKPIHMEAAKRFADADERADETRETWILVRDAAVMALLYGSGLRISEAL 180 ++RAPK+ KSLPKP+ + AAKR ADADERA E RETW+L+RDAAVMALLYGSGLRISEAL Sbjct: 169 SVRAPKIKKSLPKPLPIAAAKRLADADERAGEERETWVLIRDAAVMALLYGSGLRISEAL 228 Query: 181 GLKRRDVPKPGEGDVLVVTGKGNKTRMVPVLQNVLQLIADYAAICPHQLSPAGPVFVGAR 240 GLKRRDVP PG+GD L+V GKGNKTRMVPVLQNVL IA+YAA CP+ L P GP+FVGAR Sbjct: 229 GLKRRDVPAPGKGDTLIVHGKGNKTRMVPVLQNVLAQIAEYAAACPYNLPPDGPMFVGAR 288 Query: 241 GGPLSPRIIQLTMERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLST 300 GGPLSPRIIQL MERLRG LGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLST Sbjct: 289 GGPLSPRIIQLAMERLRGGLGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLST 348 Query: 301 TQIYTGIDSERLLEVYRSAHPR 322 TQ+YTGID+ERLLEVY SAHPR Sbjct: 349 TQVYTGIDTERLLEVYNSAHPR 370 >ref|YP_567692.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris BisB5] gb|ABE37791.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris BisB5] Length = 329 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 260/322 (80%), Positives = 280/322 (86%) Query: 1 MARTDQPIQPLELDCADASVTQEMTRWLSHLRAERRLSPKTLEAYARDVRQCLAFLAGHW 60 MA+ P+EL CA A + E TRWLSHLRAERRLS KTLEAYARD+RQ L FLAGHW Sbjct: 7 MAKAQPAPAPIELACASADLNAEFTRWLSHLRAERRLSGKTLEAYARDLRQFLIFLAGHW 66 Query: 61 GARVTLKAFSALEASDVRAFMAMRRTEEIGGRSLMRALAGLRSFGRFLEREGKGKVGALS 120 G VTL F+ LEA+DVRAFMA RR + I GRSLMRALAGLRSFGRFLEREGKG VGALS Sbjct: 67 GGVVTLGRFARLEATDVRAFMAARRGDAIAGRSLMRALAGLRSFGRFLEREGKGSVGALS 126 Query: 121 AIRAPKVAKSLPKPIHMEAAKRFADADERADETRETWILVRDAAVMALLYGSGLRISEAL 180 ++RAPK+ KSLPKPI + AAKR ADADERA E RETWILVRDAAVMALLYGSGLRISEAL Sbjct: 127 SVRAPKIKKSLPKPIQIAAAKRLADADERAGEDRETWILVRDAAVMALLYGSGLRISEAL 186 Query: 181 GLKRRDVPKPGEGDVLVVTGKGNKTRMVPVLQNVLQLIADYAAICPHQLSPAGPVFVGAR 240 GL+RRDVP PG+GD L+V GKGNKTRMVPVLQNVL IADYA+ CPH L P GP+FVGAR Sbjct: 187 GLRRRDVPAPGKGDTLIVLGKGNKTRMVPVLQNVLAQIADYASACPHPLPPDGPMFVGAR 246 Query: 241 GGPLSPRIIQLTMERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLST 300 GGPLSPRIIQL MERLRG+LGLPDSATPHALRHSFATHLL+RGGDLRAIQELLGHASLST Sbjct: 247 GGPLSPRIIQLAMERLRGSLGLPDSATPHALRHSFATHLLTRGGDLRAIQELLGHASLST 306 Query: 301 TQIYTGIDSERLLEVYRSAHPR 322 TQ+YTGID+ERLLEVY SAHPR Sbjct: 307 TQVYTGIDTERLLEVYNSAHPR 328 >ref|YP_001989215.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris TIE-1] gb|ACE98739.1| integrase family protein [Rhodopseudomonas palustris TIE-1] Length = 323 Score = 520 bits (1340), Expect = e-146, Method: Compositional matrix adjust. Identities = 258/322 (80%), Positives = 281/322 (87%) Query: 1 MARTDQPIQPLELDCADASVTQEMTRWLSHLRAERRLSPKTLEAYARDVRQCLAFLAGHW 60 MA + PLEL CA A +T EMT+WLSHLRAERRLS KTLEAYARDVRQ L FLA HW Sbjct: 1 MAPSKSAPPPLELSCAAADLTAEMTKWLSHLRAERRLSGKTLEAYARDVRQFLQFLAEHW 60 Query: 61 GARVTLKAFSALEASDVRAFMAMRRTEEIGGRSLMRALAGLRSFGRFLEREGKGKVGALS 120 G VTL F+ LEA+DVRAFMA RR +EI GRSLMRALAG+RSFGRFLEREGKG+VGAL+ Sbjct: 61 GGEVTLGRFARLEATDVRAFMAARRADEIAGRSLMRALAGMRSFGRFLEREGKGRVGALA 120 Query: 121 AIRAPKVAKSLPKPIHMEAAKRFADADERADETRETWILVRDAAVMALLYGSGLRISEAL 180 ++RAPK+ KSLPKP+ + AAKR ADADERA E RETW+L+RDAAVMALLYGSGLRISEAL Sbjct: 121 SVRAPKIKKSLPKPLPIAAAKRLADADERAGEERETWVLIRDAAVMALLYGSGLRISEAL 180 Query: 181 GLKRRDVPKPGEGDVLVVTGKGNKTRMVPVLQNVLQLIADYAAICPHQLSPAGPVFVGAR 240 GLKRRDVP G+GD L+V GKGNKTRMVPVLQNVL IA+YAA CP+ L P GP+FVGAR Sbjct: 181 GLKRRDVPAAGKGDTLIVHGKGNKTRMVPVLQNVLAQIAEYAAACPYNLPPDGPMFVGAR 240 Query: 241 GGPLSPRIIQLTMERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLST 300 GGPLSPRIIQL MERLRG LGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLST Sbjct: 241 GGPLSPRIIQLAMERLRGGLGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLST 300 Query: 301 TQIYTGIDSERLLEVYRSAHPR 322 TQ+YTGID+ERLLEVY SAHPR Sbjct: 301 TQVYTGIDTERLLEVYNSAHPR 322 >ref|YP_575886.1| site-specific tyrosine recombinase XerC [Nitrobacter hamburgensis X14] gb|ABE61426.1| tyrosine recombinase XerC subunit [Nitrobacter hamburgensis X14] Length = 300 Score = 520 bits (1340), Expect = e-146, Method: Compositional matrix adjust. Identities = 258/299 (86%), Positives = 270/299 (90%) Query: 24 MTRWLSHLRAERRLSPKTLEAYARDVRQCLAFLAGHWGARVTLKAFSALEASDVRAFMAM 83 M RWLSHLRAERRLSPKT EAYARD RQCL FL+ HWG VTLK F+ALEASDVRAFMA Sbjct: 1 MVRWLSHLRAERRLSPKTCEAYARDARQCLMFLSQHWGELVTLKRFAALEASDVRAFMAA 60 Query: 84 RRTEEIGGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKVAKSLPKPIHMEAAKRF 143 RR ++IGGRSLMRALAGLRSF RFLEREG GKVGALSAIRAPKV KSLPKPI M AAKRF Sbjct: 61 RRADDIGGRSLMRALAGLRSFARFLEREGLGKVGALSAIRAPKVGKSLPKPIQMSAAKRF 120 Query: 144 ADADERADETRETWILVRDAAVMALLYGSGLRISEALGLKRRDVPKPGEGDVLVVTGKGN 203 ADA ERA E RE WI RDAAVMALLYGSGLRISEALGLKRRDVP+PG GDVLVVTGKGN Sbjct: 121 ADASERAGEDREPWIWARDAAVMALLYGSGLRISEALGLKRRDVPQPGAGDVLVVTGKGN 180 Query: 204 KTRMVPVLQNVLQLIADYAAICPHQLSPAGPVFVGARGGPLSPRIIQLTMERLRGALGLP 263 KTRMVPVLQNVL L+ +Y A+CPH L P GP+FVGARGGPLSPRIIQLTM R+RGALGLP Sbjct: 181 KTRMVPVLQNVLALVHEYVAVCPHSLPPEGPIFVGARGGPLSPRIIQLTMARMRGALGLP 240 Query: 264 DSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSERLLEVYRSAHPR 322 DSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSERLLEVY++AHPR Sbjct: 241 DSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSERLLEVYKTAHPR 299