BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0134.0018.p (480 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001236600.1| F0F1 ATP synthase subunit beta [Bradyrhizobi... 919 0.0 ref|YP_001202612.1| F0F1 ATP synthase subunit beta [Bradyrhizobi... 919 0.0 ref|NP_767080.1| F0F1 ATP synthase subunit beta [Bradyrhizobium ... 916 0.0 ref|ZP_01044709.1| ATP synthase subunit B [Nitrobacter sp. Nb-31... 890 0.0 ref|YP_317052.1| F0F1 ATP synthase subunit beta [Nitrobacter win... 889 0.0 >ref|YP_001236600.1| F0F1 ATP synthase subunit beta [Bradyrhizobium sp. BTAi1] sp|A5E950.1|ATPB1_BRASB RecName: Full=ATP synthase subunit beta 1; AltName: Full=ATP synthase F1 sector subunit beta 1; AltName: Full=F-ATPase subunit beta 1 gb|ABQ32694.1| ATP synthase F1 subcomplex beta subunit [Bradyrhizobium sp. BTAi1] Length = 480 Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/480 (93%), Positives = 465/480 (96%) Query: 1 MATAANQIGRVTQVTGAVVDVQFEGHLPAILNALETKNGGNRLVLEVAQHLGESTVRTIA 60 MATAANQIGR+TQV GAVVDVQFEGHLPAILN+LETKN GNRLVLEVAQHLGESTVRTIA Sbjct: 1 MATAANQIGRITQVIGAVVDVQFEGHLPAILNSLETKNAGNRLVLEVAQHLGESTVRTIA 60 Query: 61 MDITEGLVRGQEVTDTGEPIRVPVGEGTLGRIINVIGEPIDEAGPIKSDGLRAIHQEAPT 120 MD TEGLVRGQEVTDTG PIRVPVGEGTLGRIINVIGEPIDEAGP+K+D LRAIHQEAP+ Sbjct: 61 MDTTEGLVRGQEVTDTGAPIRVPVGEGTLGRIINVIGEPIDEAGPVKADSLRAIHQEAPS 120 Query: 121 YTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSV 180 YTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSV Sbjct: 121 YTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSV 180 Query: 181 FAGVGERTREGNDLYHEFIESKVNADPHNPDPSVKSKCALVFGQMNEPPGARARVGLTGL 240 FAGVGERTREGNDLYHEFIESKVNADPHNPDPSVKSKCALVFGQMNEPPGARARV LTGL Sbjct: 181 FAGVGERTREGNDLYHEFIESKVNADPHNPDPSVKSKCALVFGQMNEPPGARARVALTGL 240 Query: 241 TVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITT 300 T+AE FRD+GQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITT Sbjct: 241 TIAEDFRDKGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITT 300 Query: 301 TQKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRAISEKGIYPAVDPLDSTSRML 360 T KGSITSVQAIYVPADDLTDPAPATSFAHLDATT LSR+I+EKGIYPAVDPLDSTSRML Sbjct: 301 TTKGSITSVQAIYVPADDLTDPAPATSFAHLDATTTLSRSIAEKGIYPAVDPLDSTSRML 360 Query: 361 SALVVGDEHYNTARMVQQILQRYKSLQDIIAILGMDELSEEDKLTVARARKVERFLSQPF 420 S LVVG+EHY AR VQQ+LQRYK+LQDIIAILGMDELSEEDKLTVARARKVERF+SQPF Sbjct: 361 SPLVVGEEHYAVARQVQQVLQRYKALQDIIAILGMDELSEEDKLTVARARKVERFMSQPF 420 Query: 421 HVAEVFTGSPGKFVDLADTIKGFRDLCQGKYDHLPEAAFYMVGTIEEAVEKGKKLAAEAA 480 HVAE+FTGSPGKFV+LADTIKGF+ L +GKYDHLPEAAFYMVGTIEEAVEKGKKLAAEAA Sbjct: 421 HVAEIFTGSPGKFVELADTIKGFKGLVEGKYDHLPEAAFYMVGTIEEAVEKGKKLAAEAA 480 >ref|YP_001202612.1| F0F1 ATP synthase subunit beta [Bradyrhizobium sp. ORS 278] sp|A4YKE0.1|ATPB_BRASO RecName: Full=ATP synthase subunit beta; AltName: Full=ATP synthase F1 sector subunit beta; AltName: Full=F-ATPase subunit beta emb|CAL74366.1| ATP synthase subunit beta, membrane-bound, F1 sector [Bradyrhizobium sp. ORS 278] Length = 480 Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust. Identities = 449/480 (93%), Positives = 465/480 (96%) Query: 1 MATAANQIGRVTQVTGAVVDVQFEGHLPAILNALETKNGGNRLVLEVAQHLGESTVRTIA 60 MATAANQIGRVTQV GAVVDVQFEGHLPAILN+LETKNGGNRLVLEVAQHLGESTVR IA Sbjct: 1 MATAANQIGRVTQVIGAVVDVQFEGHLPAILNSLETKNGGNRLVLEVAQHLGESTVRAIA 60 Query: 61 MDITEGLVRGQEVTDTGEPIRVPVGEGTLGRIINVIGEPIDEAGPIKSDGLRAIHQEAPT 120 MD TEGLVRGQEVTDTG PIRVPVGEGTLGRIINVIGEPIDEAGP+K+D +RAIHQEAPT Sbjct: 61 MDTTEGLVRGQEVTDTGAPIRVPVGEGTLGRIINVIGEPIDEAGPVKADNVRAIHQEAPT 120 Query: 121 YTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSV 180 YTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSV Sbjct: 121 YTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSV 180 Query: 181 FAGVGERTREGNDLYHEFIESKVNADPHNPDPSVKSKCALVFGQMNEPPGARARVGLTGL 240 FAGVGERTREGNDLYHEFIESKVNADPHNPDPSVKSKCALVFGQMNEPPGARARV LTGL Sbjct: 181 FAGVGERTREGNDLYHEFIESKVNADPHNPDPSVKSKCALVFGQMNEPPGARARVALTGL 240 Query: 241 TVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITT 300 T+AE FRD+GQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITT Sbjct: 241 TIAEDFRDKGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITT 300 Query: 301 TQKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRAISEKGIYPAVDPLDSTSRML 360 T KGSITSVQAIYVPADDLTDPAPATSFAHLDATT LSR+I+EKGIYPAVDPLDSTSRML Sbjct: 301 TTKGSITSVQAIYVPADDLTDPAPATSFAHLDATTTLSRSIAEKGIYPAVDPLDSTSRML 360 Query: 361 SALVVGDEHYNTARMVQQILQRYKSLQDIIAILGMDELSEEDKLTVARARKVERFLSQPF 420 S LVVG+EHY AR VQQ+LQRYK+LQDIIAILGMDELSEEDKLTVARARKVERF+SQPF Sbjct: 361 SPLVVGEEHYAVARQVQQVLQRYKALQDIIAILGMDELSEEDKLTVARARKVERFMSQPF 420 Query: 421 HVAEVFTGSPGKFVDLADTIKGFRDLCQGKYDHLPEAAFYMVGTIEEAVEKGKKLAAEAA 480 HVAE+FTGSPGKFV+LADTIKGF+ L +GKYDHLPEAAFYMVGTIEEAVEKGKKLAAEAA Sbjct: 421 HVAEIFTGSPGKFVELADTIKGFKGLVEGKYDHLPEAAFYMVGTIEEAVEKGKKLAAEAA 480 >ref|NP_767080.1| F0F1 ATP synthase subunit beta [Bradyrhizobium japonicum USDA 110] sp|Q89X74.1|ATPB_BRAJA RecName: Full=ATP synthase subunit beta; AltName: Full=ATP synthase F1 sector subunit beta; AltName: Full=F-ATPase subunit beta dbj|BAC45705.1| ATP synthase beta chain [Bradyrhizobium japonicum USDA 110] Length = 477 Score = 916 bits (2367), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/476 (94%), Positives = 462/476 (97%) Query: 5 ANQIGRVTQVTGAVVDVQFEGHLPAILNALETKNGGNRLVLEVAQHLGESTVRTIAMDIT 64 A Q GRVTQV GAVVDVQFEGHLPAILN+LETKNGGNRLVLEVAQHLGESTVRTIAMD T Sbjct: 2 AAQSGRVTQVIGAVVDVQFEGHLPAILNSLETKNGGNRLVLEVAQHLGESTVRTIAMDTT 61 Query: 65 EGLVRGQEVTDTGEPIRVPVGEGTLGRIINVIGEPIDEAGPIKSDGLRAIHQEAPTYTDQ 124 EGLVRGQEVTDTG PIRVPVGEGTLGRIINVIGEPIDEAGP+KS+GLRAIHQEAPTYTDQ Sbjct: 62 EGLVRGQEVTDTGSPIRVPVGEGTLGRIINVIGEPIDEAGPVKSEGLRAIHQEAPTYTDQ 121 Query: 125 STEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSVFAGV 184 STEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSVFAGV Sbjct: 122 STEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSVFAGV 181 Query: 185 GERTREGNDLYHEFIESKVNADPHNPDPSVKSKCALVFGQMNEPPGARARVGLTGLTVAE 244 GERTREGNDLYHEFIESKVNADPHNPDPSVKSKCALVFGQMNEPPGARARV LTGLT+AE Sbjct: 182 GERTREGNDLYHEFIESKVNADPHNPDPSVKSKCALVFGQMNEPPGARARVALTGLTIAE 241 Query: 245 HFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTQKG 304 FRD+GQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTQKG Sbjct: 242 DFRDKGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTQKG 301 Query: 305 SITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRAISEKGIYPAVDPLDSTSRMLSALV 364 SITSVQAIYVPADDLTDPAPATSFAHLDATT LSR+I+EKGIYPAVDPLDSTSRMLS LV Sbjct: 302 SITSVQAIYVPADDLTDPAPATSFAHLDATTTLSRSIAEKGIYPAVDPLDSTSRMLSPLV 361 Query: 365 VGDEHYNTARMVQQILQRYKSLQDIIAILGMDELSEEDKLTVARARKVERFLSQPFHVAE 424 VG+EHY AR VQQ+LQRYK+LQDIIAILGMDELSEEDKLTVARARKVERF+SQPFHVAE Sbjct: 362 VGEEHYAVARQVQQVLQRYKALQDIIAILGMDELSEEDKLTVARARKVERFMSQPFHVAE 421 Query: 425 VFTGSPGKFVDLADTIKGFRDLCQGKYDHLPEAAFYMVGTIEEAVEKGKKLAAEAA 480 +FTGSPGKFVDLADTIKGF+ L +GKYDHLPEAAFYMVGTIEEAVEKGKKLAAEAA Sbjct: 422 IFTGSPGKFVDLADTIKGFKGLVEGKYDHLPEAAFYMVGTIEEAVEKGKKLAAEAA 477 >ref|ZP_01044709.1| ATP synthase subunit B [Nitrobacter sp. Nb-311A] gb|EAQ37490.1| ATP synthase subunit B [Nitrobacter sp. Nb-311A] Length = 476 Score = 890 bits (2299), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/480 (91%), Positives = 454/480 (94%), Gaps = 4/480 (0%) Query: 1 MATAANQIGRVTQVTGAVVDVQFEGHLPAILNALETKNGGNRLVLEVAQHLGESTVRTIA 60 MATAANQIGR+TQV GAVVDVQFEGHLPAILNA+ETKNG NRLVLEVAQHLGESTVRTIA Sbjct: 1 MATAANQIGRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIA 60 Query: 61 MDITEGLVRGQEVTDTGEPIRVPVGEGTLGRIINVIGEPIDEAGPIKSDGLRAIHQEAPT 120 MD TEGLVRGQEV+DTG PIRVPVG GTLGRI+NVIGEP+DE GPIK+D LR IH EAP+ Sbjct: 61 MDTTEGLVRGQEVSDTGAPIRVPVGAGTLGRIMNVIGEPVDEGGPIKADDLRPIHAEAPS 120 Query: 121 YTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSV 180 YTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSV Sbjct: 121 YTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSV 180 Query: 181 FAGVGERTREGNDLYHEFIESKVNADPHNPDPSVKSKCALVFGQMNEPPGARARVGLTGL 240 FAGVGERTREGNDLYHEFIES VN SKCALV+GQMNEPPGARARV L+GL Sbjct: 181 FAGVGERTREGNDLYHEFIESGVNKKGGGEG----SKCALVYGQMNEPPGARARVALSGL 236 Query: 241 TVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITT 300 TVAE FRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITT Sbjct: 237 TVAEQFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITT 296 Query: 301 TQKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRAISEKGIYPAVDPLDSTSRML 360 T KGSITSVQAIYVPADDLTDPAPATSFAHLDATTVL+RAISEKGIYPAVDPLDSTSRML Sbjct: 297 TNKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLNRAISEKGIYPAVDPLDSTSRML 356 Query: 361 SALVVGDEHYNTARMVQQILQRYKSLQDIIAILGMDELSEEDKLTVARARKVERFLSQPF 420 S L+VG+EHY TARMVQQ+LQRYKSLQDIIAILGMDELSEEDKLTVARARKVERFLSQPF Sbjct: 357 SPLIVGEEHYQTARMVQQVLQRYKSLQDIIAILGMDELSEEDKLTVARARKVERFLSQPF 416 Query: 421 HVAEVFTGSPGKFVDLADTIKGFRDLCQGKYDHLPEAAFYMVGTIEEAVEKGKKLAAEAA 480 HVAEVFTGSPGKFVDLADTIKGFRDLCQGKYDHLPEAAFYMVGTIEEAVEKGKKLAAEAA Sbjct: 417 HVAEVFTGSPGKFVDLADTIKGFRDLCQGKYDHLPEAAFYMVGTIEEAVEKGKKLAAEAA 476 >ref|YP_317052.1| F0F1 ATP synthase subunit beta [Nitrobacter winogradskyi Nb-255] sp|Q3SVJ1.1|ATPB_NITWN RecName: Full=ATP synthase subunit beta; AltName: Full=ATP synthase F1 sector subunit beta; AltName: Full=F-ATPase subunit beta gb|ABA03700.1| ATP synthase F1 subcomplex beta subunit [Nitrobacter winogradskyi Nb-255] Length = 476 Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/480 (91%), Positives = 455/480 (94%), Gaps = 4/480 (0%) Query: 1 MATAANQIGRVTQVTGAVVDVQFEGHLPAILNALETKNGGNRLVLEVAQHLGESTVRTIA 60 MATAANQ+GR+TQV GAVVDVQFEGHLPAILNA+ETKNG NRLVLEVAQHLGESTVRTIA Sbjct: 1 MATAANQVGRITQVIGAVVDVQFEGHLPAILNAIETKNGENRLVLEVAQHLGESTVRTIA 60 Query: 61 MDITEGLVRGQEVTDTGEPIRVPVGEGTLGRIINVIGEPIDEAGPIKSDGLRAIHQEAPT 120 MD TEGLVRGQ+VTDTG PIRVPVG GTLGRI+NVIGEP+DE GP+K+D LR IH EAP+ Sbjct: 61 MDTTEGLVRGQDVTDTGAPIRVPVGAGTLGRIMNVIGEPVDEQGPVKADDLRPIHAEAPS 120 Query: 121 YTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSV 180 YTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSV Sbjct: 121 YTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSV 180 Query: 181 FAGVGERTREGNDLYHEFIESKVNADPHNPDPSVKSKCALVFGQMNEPPGARARVGLTGL 240 FAGVGERTREGNDLYHEFIES VN SKCALV+GQMNEPPGARARV L+GL Sbjct: 181 FAGVGERTREGNDLYHEFIESGVNKKGGGEG----SKCALVYGQMNEPPGARARVALSGL 236 Query: 241 TVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITT 300 TVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITT Sbjct: 237 TVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITT 296 Query: 301 TQKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRAISEKGIYPAVDPLDSTSRML 360 T KGSITSVQAIYVPADDLTDPAPATSFAHLDATTVL+RAISEKGIYPAVDPLDSTSRML Sbjct: 297 TNKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLNRAISEKGIYPAVDPLDSTSRML 356 Query: 361 SALVVGDEHYNTARMVQQILQRYKSLQDIIAILGMDELSEEDKLTVARARKVERFLSQPF 420 S L+VG+EHY TAR+VQQ+LQRYKSLQDIIAILGMDELSEEDKLTVARARKVERFLSQPF Sbjct: 357 SPLIVGEEHYQTARLVQQVLQRYKSLQDIIAILGMDELSEEDKLTVARARKVERFLSQPF 416 Query: 421 HVAEVFTGSPGKFVDLADTIKGFRDLCQGKYDHLPEAAFYMVGTIEEAVEKGKKLAAEAA 480 HVAEVFTGSPGKFVDLADTIKGFRDLCQGKYDHLPEAAFYMVGTIEEAVEKGKKLAAEAA Sbjct: 417 HVAEVFTGSPGKFVDLADTIKGFRDLCQGKYDHLPEAAFYMVGTIEEAVEKGKKLAAEAA 476