BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0134.0015.p (331 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08630698.1| transcriptional regulatory protein [Bradyrhiz... 393 e-107 gb|EGP55542.1| AraC family transcriptional regulator [Agrobacter... 268 1e-69 ref|ZP_08529279.1| AraC family transcriptional regulator [Agroba... 264 2e-68 ref|ZP_08630697.1| rranscriptional regulator, AraC family [Brady... 259 3e-67 ref|YP_004444187.1| transcriptional regulator, AraC family [Agro... 258 1e-66 >ref|ZP_08630698.1| transcriptional regulatory protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06552.1| transcriptional regulatory protein [Bradyrhizobiaceae bacterium SG-6C] Length = 316 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 196/312 (62%), Positives = 239/312 (76%) Query: 1 VLTFTTDALRPQDRFEHWCEVRGKSLFGVTIELERDKRADFRGRFSATPVGSAVLAQMSA 60 +++F+TD LRPQDRF+HWCEVRGKSLFGVTIELER++RADF GRFSA P+G+AVLA+M+A Sbjct: 1 MISFSTDDLRPQDRFDHWCEVRGKSLFGVTIELERERRADFHGRFSAVPIGNAVLAEMTA 60 Query: 61 SSYCVSRTASDIARVPSNSLHLAWQVRGPGHMNIGRDRVQFVRNGDLVFGHSNLPFASTP 120 SSY V RT +DIARV SNSL + +Q+RGPG +++GR R+ +R GD HS+ PF TP Sbjct: 61 SSYRVGRTPADIARVSSNSLSIGYQIRGPGVVDLGRGRIHRIREGDFTISHSDQPFMGTP 120 Query: 121 ERTDGFDFFSLKIPATDELVLGARIEDAPPVALARDASLTRLVGAMFRSMARDLAQAGQF 180 ERTDGF F +LKIP +++L AR D P AL + LTRL+ AMF +++ A Sbjct: 121 ERTDGFHFRTLKIPLNSDILLDARAHDLAPAALEGNTKLTRLIAAMFAALSDPREPAASP 180 Query: 181 AGDVAHMVRLALLARGRLRPRQDEIRAALHAGYLHAAREILFRDLHRASLTPAAVAAELG 240 D+ H+ RLALLAR RL P E RAAL AG+LHAAR I+ R+LHRA LTPA VAAEL Sbjct: 181 EDDIRHIARLALLARQRLSPGFPESRAALRAGHLHAARAIMKRNLHRADLTPALVAAELA 240 Query: 241 ISLRQLHALFEPTGLSFARTLTAARLKAARRALYAIRERSIDEIAFSCGFDSIATFYRVF 300 +SLRQ+H LFEPTG SFARTLTA RLK ARR L A+ S+ +IA++CGFDSIATFYRVF Sbjct: 241 VSLRQVHVLFEPTGFSFARTLTAMRLKEARRRLEAMPAHSVADIAYACGFDSIATFYRVF 300 Query: 301 RSTYGMTPGDAR 312 RST+GMTPGD R Sbjct: 301 RSTFGMTPGDVR 312 >gb|EGP55542.1| AraC family transcriptional regulator [Agrobacterium tumefaciens F2] Length = 299 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 143/294 (48%), Positives = 191/294 (64%) Query: 21 VRGKSLFGVTIELERDKRADFRGRFSATPVGSAVLAQMSASSYCVSRTASDIARVPSNSL 80 +RGKSLFGVTIEL D+R F+G F A + SAV+++M ASSY V+RT +DIAR+ NSL Sbjct: 1 MRGKSLFGVTIELAPDRRHSFKGSFQARAIASAVVSEMRASSYRVNRTQADIARIAGNSL 60 Query: 81 HLAWQVRGPGHMNIGRDRVQFVRNGDLVFGHSNLPFASTPERTDGFDFFSLKIPATDELV 140 + QV G G ++ GRDRV V GD+ +S+LP+ + P F + LKIP DEL+ Sbjct: 61 CIGLQVTGSGLLHAGRDRVHSVSGGDITINYSDLPYDAIPGGEADFHYKMLKIPVDDELM 120 Query: 141 LGARIEDAPPVALARDASLTRLVGAMFRSMARDLAQAGQFAGDVAHMVRLALLARGRLRP 200 LG +D + + +R A+F ++ + + A DVAH+ RLA+ ARGRL P Sbjct: 121 LGQTADDLFATRYGDNTAFSRPFRALFNALNAEHGRLIDPARDVAHVARLAMTARGRLSP 180 Query: 201 RQDEIRAALHAGYLHAAREILFRDLHRASLTPAAVAAELGISLRQLHALFEPTGLSFART 260 E+RAAL G +AA++I+ R R +LTPA VA ELGISLRQLH +FE LSF+RT Sbjct: 181 AMPEVRAALRTGLCYAAQDIMMRKKSRQNLTPATVARELGISLRQLHVVFEGAELSFSRT 240 Query: 261 LTAARLKAARRALYAIRERSIDEIAFSCGFDSIATFYRVFRSTYGMTPGDARRI 314 L++ R++ A+R L I +IA+ CGFDS+ATFYRVF STYGM PG+ R I Sbjct: 241 LSSMRIEEAKRLLLEFPTLPITQIAYGCGFDSLATFYRVFSSTYGMAPGEVRTI 294 >ref|ZP_08529279.1| AraC family transcriptional regulator [Agrobacterium sp. ATCC 31749] gb|EGL63880.1| AraC family transcriptional regulator [Agrobacterium sp. ATCC 31749] Length = 299 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 144/298 (48%), Positives = 194/298 (65%), Gaps = 2/298 (0%) Query: 21 VRGKSLFGVTIELERDKRADFRGRFSATPVGSAVLAQMSASSYCVSRTASDIARVPSNSL 80 +RGKSLFGVTIEL R+ R F+G F A + AV +M ASSY V+RT +DIAR+ +SL Sbjct: 1 MRGKSLFGVTIELARNLRHSFKGSFQARALTGAVATEMRASSYRVNRTEADIARIAGDSL 60 Query: 81 HLAWQVRGPGHMNIGRDRVQFVRNGDLVFGHSNLPFASTPERTDGFDFFSLKIPATDELV 140 + QV+G G ++ GRDRV V GD+ +S+LP+ + P F + LKIP E++ Sbjct: 61 CIGLQVKGSGFLHAGRDRVHNVSGGDITINYSDLPYDAIPGGEAAFHYRMLKIPVDYEVM 120 Query: 141 LGARIEDAPPVALARDASLTRLVGAMFRSMARDLAQAGQFAGDVAHMVRLALLARGRLRP 200 LG +D A + +++R A+F ++ D A+ A DVAH+ RLA+ RGRL P Sbjct: 121 LGQPTDDLFATRYAENTAVSRPFRALFDALNADHARLIDPARDVAHIARLAMAVRGRLSP 180 Query: 201 RQDEIRAALHAGYLHAAREILFRDLHRASLTPAAVAAELGISLRQLHALFEPTGLSFART 260 E+RAAL G +AA+EI+ R R L+PA VA ELGISLRQLH +FE LSF+RT Sbjct: 181 AMPEVRAALRTGLCYAAQEIMMRKKARQELSPATVARELGISLRQLHVVFEGAELSFSRT 240 Query: 261 LTAARLKAARRALYAIRERSIDEIAFSCGFDSIATFYRVFRSTYGMTPGDAR--RIPP 316 L+A R++ A+R L A + +IA+ CGFDS+ATFYRVF +TYGMTPG+AR +PP Sbjct: 241 LSAMRIEEAKRLLLAFPALPVTQIAYGCGFDSLATFYRVFTATYGMTPGEARITDMPP 298 >ref|ZP_08630697.1| rranscriptional regulator, AraC family [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06551.1| rranscriptional regulator, AraC family [Bradyrhizobiaceae bacterium SG-6C] Length = 322 Score = 259 bits (663), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 148/314 (47%), Positives = 194/314 (61%), Gaps = 2/314 (0%) Query: 1 VLTFTTDALRPQDRFEHWCEVRGKSLFGVTIELERDKRADFRGRFSATPVGSAVLAQMSA 60 +LTF+TD LRP +RF++WCEVR ++LFGVTI L +++R FRGRF+A PVG A L+QM A Sbjct: 1 MLTFSTDDLRPHERFDYWCEVRARNLFGVTISLRQEERQHFRGRFTALPVGGATLSQMQA 60 Query: 61 SSYCVSRTASDIARVPSNSLHLAWQVRGPGHMNIGRDRVQFVRNGDLVFGHSNLPFASTP 120 + Y VSR DI+R S+SL + Q G N VR GDL H+++P+ + P Sbjct: 61 TPYSVSRGTDDISRASSDSLCIYQQTGGASWFNTQNGTEFVVRPGDLAISHTDVPYLTRP 120 Query: 121 ERTDGFDFFSLKIPATDELVLGARIEDAPPVALARDASLTRLVGAMFRSMARDLAQAGQF 180 GFD LKIP V P + D L+ ++ A F ++A A+ + Sbjct: 121 ATAHGFDLRVLKIPLAGRDVRAQGTLRFAPSPMRNDPRLSMVIAASFAALAAQAAKNPEA 180 Query: 181 AGD--VAHMVRLALLARGRLRPRQDEIRAALHAGYLHAAREILFRDLHRASLTPAAVAAE 238 + V H+ +LALLARG + RAAL G+L AAR+IL RDLHR L+PA VA Sbjct: 181 DCEAAVGHLAQLALLARGSVPASSTGTRAALRFGFLQAARDILARDLHRPGLSPANVAEA 240 Query: 239 LGISLRQLHALFEPTGLSFARTLTAARLKAARRALYAIRERSIDEIAFSCGFDSIATFYR 298 LGIS+RQLH LFEPTG SF+RTL A RL A R L + ++ +IA +CGFDS+ATFYR Sbjct: 241 LGISVRQLHILFEPTGESFSRTLLAMRLSEACRLLRSAPALTVTDIAHACGFDSLATFYR 300 Query: 299 VFRSTYGMTPGDAR 312 VFR +G TPGD + Sbjct: 301 VFRIAHGATPGDIK 314 >ref|YP_004444187.1| transcriptional regulator, AraC family [Agrobacterium sp. H13-3] gb|ADY67096.1| transcriptional regulator, AraC family [Agrobacterium sp. H13-3] Length = 299 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 139/292 (47%), Positives = 187/292 (64%) Query: 21 VRGKSLFGVTIELERDKRADFRGRFSATPVGSAVLAQMSASSYCVSRTASDIARVPSNSL 80 +RGKSLFGVTIEL D+R F G F A V AV+++M ASSY V+RT +DIAR+ +SL Sbjct: 1 MRGKSLFGVTIELAPDRRQTFSGSFQARSVAGAVVSEMRASSYRVNRTEADIARIAGDSL 60 Query: 81 HLAWQVRGPGHMNIGRDRVQFVRNGDLVFGHSNLPFASTPERTDGFDFFSLKIPATDELV 140 + QV+G G ++ GRDR+ V GD +S+LP+ + P F + LKIP DE++ Sbjct: 61 CIGLQVKGSGLLHAGRDRIHAVSGGDFTINYSDLPYDAIPGGEADFHYKMLKIPVDDEVM 120 Query: 141 LGARIEDAPPVALARDASLTRLVGAMFRSMARDLAQAGQFAGDVAHMVRLALLARGRLRP 200 LG +D A + + +R A+F ++ + + DV H+ RLA+ ARGRL P Sbjct: 121 LGRPADDLFATRYADNTAFSRPFRALFNALNVERGRLIDPVRDVTHIARLAMTARGRLSP 180 Query: 201 RQDEIRAALHAGYLHAAREILFRDLHRASLTPAAVAAELGISLRQLHALFEPTGLSFART 260 E+RAAL G +AA++I+ R +LTPAAVA ELGISLRQLH +FE LSF+RT Sbjct: 181 AMPEVRAALRTGLCYAAQDIMMRKKSWQNLTPAAVAKELGISLRQLHVVFEGAELSFSRT 240 Query: 261 LTAARLKAARRALYAIRERSIDEIAFSCGFDSIATFYRVFRSTYGMTPGDAR 312 L + R++ ARR L I ++A+ CGFDS+ TFYRVF STYGMTPG+AR Sbjct: 241 LASMRIEEARRLLLESPALPITQVAYGCGFDSLPTFYRVFSSTYGMTPGEAR 292