BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0134.0010.p (391 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EFV86212.1| NADH:flavin oxidoreductase [Achromobacter xylosox... 388 e-106 ref|YP_004111142.1| NADH:flavin oxidoreductase/NADH oxidase [Rho... 341 1e-91 ref|YP_568130.1| NADH:flavin oxidoreductase/NADH oxidase [Rhodop... 337 2e-90 ref|YP_484503.1| NADH:flavin oxidoreductase/NADH oxidase [Rhodop... 337 2e-90 ref|NP_950027.1| putative FMN oxidoreductase [Rhodopseudomonas p... 336 3e-90 >gb|EFV86212.1| NADH:flavin oxidoreductase [Achromobacter xylosoxidans C54] Length = 377 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 187/365 (51%), Positives = 251/365 (68%), Gaps = 2/365 (0%) Query: 6 LFSPMTIRGVTLKNRIVVPPMHQYSAEKGFPTDWHLMNAGKFAAGGAGLVIVESTKVERR 65 LFSP TIRG T KNRI+V PM Y A +G +DWH + KFA GGAG V +E+TKVERR Sbjct: 9 LFSPFTIRGTTFKNRIMVSPMAVYCAREGVLSDWHFAHYAKFAMGGAGFVCMEATKVERR 68 Query: 66 GCGTIGDLGIWDDKFIAPLSRLVGFIKQQSAVAGIQLGHSGRKARASRPWEGDRPLERTA 125 G GT+GD G+W D + + + FI Q + AGIQL H+GRKA +P +G P++R+ Sbjct: 69 GLGTVGDQGLWSDTHVPRIRAIADFIHSQDSKAGIQLNHAGRKAGTLKPADGFGPMDRSV 128 Query: 126 EIEDWDAWTPVAPSAIAHSERWPVPRALDTHEVKDLVEAWGQAARRAHQAGFEVLELHGA 185 E+E W + PSA+ + E WPVPR + ++++++EA+GQAARRAH A +V+E+HGA Sbjct: 129 EVEG-GHWEVIGPSAVPYLEGWPVPREMTIRDIEEVIEAFGQAARRAHAANIDVIEIHGA 187 Query: 186 HGYLVHEFLSGRSNQRNDEYGGSEANRMRFLIEVTEAVRVHWPDHKPLFVRLSVEDNAGW 245 HGYL+H+FLS SN R D+YGGS NRMRF +++TE +R WP K LF R+S +D+ GW Sbjct: 188 HGYLIHQFLSPSSNLRTDKYGGSLPNRMRFALQITEHIREIWPAEKALFFRISAQDDTGW 247 Query: 246 GSEQSARLARILKAEGVDVIDCSSGGIS-EMAPILGKEIKYNYQVPLAEYVRAHADIMTM 304 G E+S L+R L A GVDVIDCSS G + A ++ +QVP AE +R I T+ Sbjct: 248 GLEESFTLSRELAARGVDVIDCSSSGTNVRSAATNAASLQLGFQVPFAEAIRRETGIPTI 307 Query: 305 AVGLIIHGDQAEQILRDKQADLIAVGREILNNPNWPMDAALKLGVEGPFRNVPPQFGYWL 364 AVGLI+ QA+ I+++ QADL+A+GRE+L NP WP AA+ LGV+ F+N+PPQ G+WL Sbjct: 308 AVGLIVQPQQADSIIKNGQADLVAIGRELLYNPFWPHHAAMTLGVDPEFKNMPPQIGWWL 367 Query: 365 GTRAK 369 RAK Sbjct: 368 NKRAK 372 >ref|YP_004111142.1| NADH:flavin oxidoreductase/NADH oxidase [Rhodopseudomonas palustris DX-1] gb|ADU46409.1| NADH:flavin oxidoreductase/NADH oxidase [Rhodopseudomonas palustris DX-1] Length = 387 Score = 341 bits (875), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 187/371 (50%), Positives = 232/371 (62%), Gaps = 5/371 (1%) Query: 1 MSDKLLFSPMTIRGVTLKNRIVVPPMHQYSAEKGFPTDWHLMNAGKFAAGGAGLVIVEST 60 MS LF P+T+RG+T KNRI++ PM QYSA G +DWHL++ GKFA GGAG+V+VE+T Sbjct: 1 MSLPPLFRPITLRGITAKNRILISPMCQYSAVDGVASDWHLVHLGKFAQGGAGIVMVEAT 60 Query: 61 KVERRGCGTIGDLGIWDDKFIAPLSRLVGFIKQQSAVAGIQLGHSGRKARASRPWEGDRP 120 V G T GDLG+W+D I PL R+ F++ AV IQL H+GRKA RPW G+ Sbjct: 61 AVTANGRITHGDLGLWNDDQIRPLERIAAFLRDNGAVPAIQLAHAGRKASMQRPWYGNAA 120 Query: 121 LERTAEIEDWDAWTPVAPSAIAHSERWPVPRALDTHEVKDLVEAWGQAARRAHQAGFEVL 180 L W VAPSAI + W P+ L ++ L++AW A RA +AGFE+L Sbjct: 121 LTAEDAARGDQPWDIVAPSAIPMDDGWLTPQELTDRDLDHLLDAWRSATLRAVEAGFEML 180 Query: 181 ELHGAHGYLVHEFLSGRSNQRNDEYGGSEANRMRFLIEVTEAVRVHWPDHKPLFVRLSVE 240 E+H AHGYL+H FLS SNQR D YGG A RMRF +EV E VR WPD PL VR+S Sbjct: 181 EVHCAHGYLLHSFLSPLSNQRTDAYGGDRAGRMRFPLEVLETVRAAWPDTLPLAVRVSSV 240 Query: 241 DNAGWGSE--QSARLARILKAEGVDVIDCSSGGISEMAPILGKEIKYNYQVPLAEYVRAH 298 D G E S AR KA G D+IDCSSGG+ A Y +QVP AE +R Sbjct: 241 DGVEGGIELQDSVVFAREAKARGADIIDCSSGGLLGSATANRIPRGYGFQVPFAETIRTE 300 Query: 299 ADIMTMAVGLIIHGDQAEQILRDKQADLIAVGREILNNPNWPMDAALKLGVEG--PFRNV 356 A+I T+AVGLI+H DQAE I+ QADLIA+GRE L +PNW + A L+L EG F + Sbjct: 301 AEIPTIAVGLIVHPDQAENIVEQGQADLIAIGREALFDPNWALHAQLEL-TEGDEAFADW 359 Query: 357 PPQFGYWLGTR 367 P Q+G+WL R Sbjct: 360 PKQYGWWLERR 370 >ref|YP_568130.1| NADH:flavin oxidoreductase/NADH oxidase [Rhodopseudomonas palustris BisB5] gb|ABE38229.1| NADH:flavin oxidoreductase/NADH oxidase [Rhodopseudomonas palustris BisB5] Length = 387 Score = 337 bits (864), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 181/370 (48%), Positives = 231/370 (62%), Gaps = 3/370 (0%) Query: 1 MSDKLLFSPMTIRGVTLKNRIVVPPMHQYSAEKGFPTDWHLMNAGKFAAGGAGLVIVEST 60 MS LF P+T+RG+T +NR+++ PM QYSA G DWHL++ GKFA GGAG+V+VE+T Sbjct: 1 MSQPPLFRPITLRGITARNRVLISPMCQYSAVDGVVNDWHLVHLGKFAQGGAGIVMVEAT 60 Query: 61 KVERRGCGTIGDLGIWDDKFIAPLSRLVGFIKQQSAVAGIQLGHSGRKARASRPWEGDRP 120 V G T GD+G+W D + PL R+ F++ AV IQL H+GRKA RPW G+ Sbjct: 61 AVTANGRITHGDVGLWHDGQVKPLERIAAFLRDNGAVPAIQLAHAGRKASMQRPWYGNAA 120 Query: 121 LERTAEIEDWDAWTPVAPSAIAHSERWPVPRALDTHEVKDLVEAWGQAARRAHQAGFEVL 180 L + W VAPS I E W P+ L E +L++AW A RA +AGFE+L Sbjct: 121 LTPEDQTRGDLPWPIVAPSPIPMEEGWLTPQELSEDEFGELLDAWRAATLRAVEAGFEML 180 Query: 181 ELHGAHGYLVHEFLSGRSNQRNDEYGGSEANRMRFLIEVTEAVRVHWPDHKPLFVRLSVE 240 E+H AHGYL+H FLS SN+R D YGG+ RMRF ++V E VR WPD PL VR+S Sbjct: 181 EVHCAHGYLLHSFLSPLSNKRTDAYGGNRTGRMRFPLQVIETVRAVWPDTLPLAVRISSV 240 Query: 241 DNAGWGSE--QSARLARILKAEGVDVIDCSSGGISEMAPILGKEIKYNYQVPLAEYVRAH 298 D G E S AR KA GVD+IDCSSGG+ A G Y +QVP AE +R Sbjct: 241 DGVDGGIELADSVVFAREAKARGVDLIDCSSGGLLGSATAAGIPRGYGFQVPFAETIRKE 300 Query: 299 ADIMTMAVGLIIHGDQAEQILRDKQADLIAVGREILNNPNWPMDAALKLGVEG-PFRNVP 357 A+I T+AVGLI+H DQAE I+ QADL+A+GRE L +PNW + A L+L E F + P Sbjct: 301 AEIPTIAVGLILHPDQAESIVERGQADLVAIGREALFDPNWTLHAQLELTEEKETFADWP 360 Query: 358 PQFGYWLGTR 367 Q+G+WL R Sbjct: 361 KQYGWWLERR 370 >ref|YP_484503.1| NADH:flavin oxidoreductase/NADH oxidase [Rhodopseudomonas palustris HaA2] gb|ABD05592.1| NADH:flavin oxidoreductase/NADH oxidase [Rhodopseudomonas palustris HaA2] Length = 387 Score = 337 bits (863), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 182/370 (49%), Positives = 230/370 (62%), Gaps = 3/370 (0%) Query: 1 MSDKLLFSPMTIRGVTLKNRIVVPPMHQYSAEKGFPTDWHLMNAGKFAAGGAGLVIVEST 60 MS LF P T+RG+T KNRI++ PM QYSA G DWHL++ GKFA GGAG+V+VE+T Sbjct: 1 MSQPPLFRPFTLRGITAKNRILISPMCQYSAVDGVANDWHLVHLGKFAQGGAGIVMVEAT 60 Query: 61 KVERRGCGTIGDLGIWDDKFIAPLSRLVGFIKQQSAVAGIQLGHSGRKARASRPWEGDRP 120 V G T GDLG+W D I PL R+ F++ AV IQL H+GRKA RPW G+ Sbjct: 61 AVTANGRITHGDLGLWHDGQIKPLERIAAFLRDNGAVPAIQLAHAGRKASMQRPWYGNAA 120 Query: 121 LERTAEIEDWDAWTPVAPSAIAHSERWPVPRALDTHEVKDLVEAWGQAARRAHQAGFEVL 180 L + W VAPS++ + W +P+ L ++ DL+EAW A RA +AGFE+L Sbjct: 121 LTAEDRARGDEPWPIVAPSSVPMEDGWLMPQELSEDQLDDLLEAWRAATLRAVEAGFEML 180 Query: 181 ELHGAHGYLVHEFLSGRSNQRNDEYGGSEANRMRFLIEVTEAVRVHWPDHKPLFVRLSVE 240 E+H AHGYL+H FLS SN R D YGGS A RMRF ++V E VR WP PL VR+S Sbjct: 181 EVHCAHGYLLHSFLSPLSNMRTDAYGGSRAGRMRFPLQVIETVRAVWPAPLPLAVRVSSV 240 Query: 241 DNAGWGSE--QSARLARILKAEGVDVIDCSSGGISEMAPILGKEIKYNYQVPLAEYVRAH 298 D G E S AR KA G D+IDCSSGG+ A Y +QVP AE +R Sbjct: 241 DGVEGGIELADSVVFAREAKARGADIIDCSSGGLLGSATAARIPRGYGFQVPFAETIRKE 300 Query: 299 ADIMTMAVGLIIHGDQAEQILRDKQADLIAVGREILNNPNWPMDAALKLGVEGP-FRNVP 357 A+I T+AVGLI+H DQAE I+ QADL+A+GRE L +PNW + A L+L + F + P Sbjct: 301 AEIPTIAVGLILHPDQAESIVEQGQADLVAIGREALFDPNWTLHAQLELTEDDEVFADWP 360 Query: 358 PQFGYWLGTR 367 Q+G+WL R Sbjct: 361 KQYGWWLERR 370 >ref|NP_950027.1| putative FMN oxidoreductase [Rhodopseudomonas palustris CGA009] emb|CAE30133.1| putative FMN oxidoreductase [Rhodopseudomonas palustris CGA009] Length = 387 Score = 336 bits (862), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 185/371 (49%), Positives = 227/371 (61%), Gaps = 5/371 (1%) Query: 1 MSDKLLFSPMTIRGVTLKNRIVVPPMHQYSAEKGFPTDWHLMNAGKFAAGGAGLVIVEST 60 MS LF P T+RG+T KNRI++ PM QYSA G DWHL++ GKFA GG G+V+VE+T Sbjct: 1 MSQPPLFRPFTLRGITTKNRILISPMCQYSAVDGVANDWHLVHLGKFAQGGTGIVMVEAT 60 Query: 61 KVERRGCGTIGDLGIWDDKFIAPLSRLVGFIKQQSAVAGIQLGHSGRKARASRPWEGDRP 120 V G T GDLG+W+D I PL R+ F++ AV IQL H+GRKA RPW G+ Sbjct: 61 AVTANGRITHGDLGLWNDDQIRPLERIAAFLRDNGAVPAIQLAHAGRKASMQRPWYGNAA 120 Query: 121 LERTAEIEDWDAWTPVAPSAIAHSERWPVPRALDTHEVKDLVEAWGQAARRAHQAGFEVL 180 L W VAPS I E W P+ L + L+EAW A RA +AGFE+L Sbjct: 121 LTAEDIARGDQPWEIVAPSPIPMDEGWLTPQELTDDNLDYLLEAWRSATLRAVEAGFEML 180 Query: 181 ELHGAHGYLVHEFLSGRSNQRNDEYGGSEANRMRFLIEVTEAVRVHWPDHKPLFVRLSVE 240 E+H AHGYL+H FLS SN+R D YG A RMRF +EV E VR WPD PL +R+S Sbjct: 181 EVHCAHGYLLHSFLSPLSNKRTDAYGADRAGRMRFPLEVIETVRAAWPDTLPLAIRVSSV 240 Query: 241 DNAGWGSE--QSARLARILKAEGVDVIDCSSGGISEMAPILGKEIKYNYQVPLAEYVRAH 298 D G E S AR KA G D+IDCSSGG+ A Y +QVP AE +R Sbjct: 241 DGVDGGIELADSVVFAREAKARGADIIDCSSGGLLGSATANRIPRGYGFQVPFAEAIRTE 300 Query: 299 ADIMTMAVGLIIHGDQAEQILRDKQADLIAVGREILNNPNWPMDAALKLGVEGP--FRNV 356 A+I T+AVGLIIH DQAE+I+ QADLIA+GRE L +PNW + A L+L EG F + Sbjct: 301 AEIPTIAVGLIIHPDQAEKIVEQGQADLIAIGREALFDPNWALHAQLEL-TEGDEVFADW 359 Query: 357 PPQFGYWLGTR 367 P Q+G+WL R Sbjct: 360 PKQYGWWLERR 370