BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0134.0007.p (338 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_02890724.1| ABC nitrate/sulfonate/bicarbonate transporter... 424 e-116 ref|ZP_02906910.1| ABC nitrate/sulfonate/bicarbonate transporter... 419 e-115 gb|EGD06392.1| hypothetical protein B1M_01608 [Burkholderia sp. ... 412 e-113 ref|YP_002945752.1| family 3 extracellular solute-binding protei... 412 e-113 ref|YP_001773816.1| ABC nitrate/sulfonate/bicarbonate transporte... 408 e-112 >ref|ZP_02890724.1| ABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein [Burkholderia ambifaria IOP40-10] gb|EDT03680.1| ABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein [Burkholderia ambifaria IOP40-10] Length = 332 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 208/296 (70%), Positives = 234/296 (79%) Query: 35 TDLGGVTLRVAYYKGGWRQLLQAAGEDKTPYRIEWKELNNGVLHIEALNGDALDIGSGSE 94 TDL G TLRVA YKGGWR LLQAAG TPYRIEW+ELNNGVLHIEALN DALDIGSGSE Sbjct: 36 TDLAGTTLRVATYKGGWRALLQAAGLSDTPYRIEWRELNNGVLHIEALNADALDIGSGSE 95 Query: 95 IPAMFAARQNAKVRFVAVTHEDLNIQVTVAAKDAPIHSIADLKGKRVGYVRATTAHYFLA 154 IPA+FAARQ A VRF++ T EDLN QVT+A KD PI SIADLKGKRVGYVRATT+HYFL Sbjct: 96 IPAVFAARQKASVRFISRTREDLNNQVTLARKDTPIRSIADLKGKRVGYVRATTSHYFLY 155 Query: 155 KQLEEAGLAFGDIEAINLTPSDGYSAFASGKLDAWAIYGYNGQLAIAKQGARLLKTGAGY 214 +QL EAGL F DI INL+P+DG SA+ G LDAWAIYGYNGQLA + GAR+LKTG GY Sbjct: 156 RQLAEAGLGFDDIHPINLSPTDGLSAYDRGDLDAWAIYGYNGQLARNRYGARVLKTGKGY 215 Query: 215 LSGNFPIYANPKAVDDPLRHAAVSDLLLRIQRAYAFANKNFPVYAAAQVAETHLPLQDIL 274 LSGNFPIYANP+ +DDP R AA DLLLR QRAYA+AN +F YA Q ET +P+ D+ Sbjct: 216 LSGNFPIYANPRTLDDPRRRAATGDLLLRFQRAYAWANGHFDAYARVQNGETRVPVADLA 275 Query: 275 DQFARRSDDFALAGVTPDVPETHQKVADTFLKLGVLDARAEVGKFWDTSFNEAIAA 330 FA+RSDD+AL VTPDV HQ+VAD F ++GVLD A V FWDTSFN +A+ Sbjct: 276 AMFAQRSDDYALLPVTPDVVAQHQQVADVFARIGVLDGPANVAPFWDTSFNALVAS 331 >ref|ZP_02906910.1| ABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein [Burkholderia ambifaria MEX-5] gb|EDT41931.1| ABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein [Burkholderia ambifaria MEX-5] Length = 332 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 205/296 (69%), Positives = 233/296 (78%) Query: 35 TDLGGVTLRVAYYKGGWRQLLQAAGEDKTPYRIEWKELNNGVLHIEALNGDALDIGSGSE 94 TDL G LRVA YKGGWR LLQAAG TPYRIEW+ELNNGVLHIEALN DALDIGSGSE Sbjct: 36 TDLAGARLRVATYKGGWRALLQAAGLSDTPYRIEWRELNNGVLHIEALNADALDIGSGSE 95 Query: 95 IPAMFAARQNAKVRFVAVTHEDLNIQVTVAAKDAPIHSIADLKGKRVGYVRATTAHYFLA 154 IPA+FAARQ A VRF++ T EDLN QVT+A +D PI SIADLKGKRVGYVRATT+HYFL Sbjct: 96 IPAVFAARQKASVRFISRTREDLNNQVTLARRDTPIRSIADLKGKRVGYVRATTSHYFLY 155 Query: 155 KQLEEAGLAFGDIEAINLTPSDGYSAFASGKLDAWAIYGYNGQLAIAKQGARLLKTGAGY 214 +QL EAGL F DI INL+P+DG SA+ G LDAWAIYGYNGQLA + GAR+LKTG GY Sbjct: 156 RQLAEAGLGFDDIHPINLSPTDGLSAYDRGDLDAWAIYGYNGQLARNRYGARVLKTGKGY 215 Query: 215 LSGNFPIYANPKAVDDPLRHAAVSDLLLRIQRAYAFANKNFPVYAAAQVAETHLPLQDIL 274 LSGNFPIYANP+ +DDP R AA DLLLR QRAYA+AN +F YA Q ET +P+ D+ Sbjct: 216 LSGNFPIYANPRTLDDPRRRAATGDLLLRFQRAYAWANGHFDAYARVQNGETRVPVADLA 275 Query: 275 DQFARRSDDFALAGVTPDVPETHQKVADTFLKLGVLDARAEVGKFWDTSFNEAIAA 330 FA+RSDD+AL VTP+V HQ+VAD F ++GVLD A V FWDTSFN +A+ Sbjct: 276 AMFAQRSDDYALLPVTPEVVAQHQQVADVFARIGVLDGPANVAPFWDTSFNALVAS 331 >gb|EGD06392.1| hypothetical protein B1M_01608 [Burkholderia sp. TJI49] Length = 329 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 201/304 (66%), Positives = 237/304 (77%) Query: 27 AETGAGGGTDLGGVTLRVAYYKGGWRQLLQAAGEDKTPYRIEWKELNNGVLHIEALNGDA 86 A DL G TLRVA YKG WR LLQAAG TPYRI+W+ELNNGVLHIEALN DA Sbjct: 25 AAASPSASVDLAGTTLRVATYKGIWRPLLQAAGLGDTPYRIDWRELNNGVLHIEALNADA 84 Query: 87 LDIGSGSEIPAMFAARQNAKVRFVAVTHEDLNIQVTVAAKDAPIHSIADLKGKRVGYVRA 146 LD+GSGSEIPA+FAARQ A V+F++ T EDLN QVT+A ++ I IADLKGKRVGYVRA Sbjct: 85 LDVGSGSEIPAVFAARQKASVKFISRTREDLNNQVTLARRETAIRGIADLKGKRVGYVRA 144 Query: 147 TTAHYFLAKQLEEAGLAFGDIEAINLTPSDGYSAFASGKLDAWAIYGYNGQLAIAKQGAR 206 TT+HYFL +QL EAGL F DI+ INL+P+DG SA+ G +DAWAIYGYNGQLA + GAR Sbjct: 145 TTSHYFLYRQLAEAGLGFDDIQPINLSPTDGLSAYDRGDIDAWAIYGYNGQLARDRYGAR 204 Query: 207 LLKTGAGYLSGNFPIYANPKAVDDPLRHAAVSDLLLRIQRAYAFANKNFPVYAAAQVAET 266 +LKTG GYLSGNFPIYANP+A+DDP R AA DLLLR++RAYA+AN +FP YA AQ ET Sbjct: 205 VLKTGKGYLSGNFPIYANPRALDDPRRRAATGDLLLRLRRAYAWANTHFPDYARAQNRET 264 Query: 267 HLPLQDILDQFARRSDDFALAGVTPDVPETHQKVADTFLKLGVLDARAEVGKFWDTSFNE 326 +P+ D+++ F RRSDDFAL VTP+V HQ+VAD F ++GVLD A V FWDTSFN Sbjct: 265 RVPVADLVELFDRRSDDFALLPVTPEVIAQHQQVADAFARIGVLDGPANVAPFWDTSFNA 324 Query: 327 AIAA 330 +A+ Sbjct: 325 LVAS 328 >ref|YP_002945752.1| family 3 extracellular solute-binding protein [Variovorax paradoxus S110] gb|ACS20486.1| extracellular solute-binding protein family 3 [Variovorax paradoxus S110] Length = 329 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 208/333 (62%), Positives = 249/333 (74%), Gaps = 4/333 (1%) Query: 1 VTTPFSLSRRSALGVLAGSLITGGARAETGAGGGTDLGGVTLRVAYYKGGWRQLLQAAGE 60 +T+ F + RR L AG G GA DL GVTLRV YKG WR LLQA+G+ Sbjct: 1 MTSDFPIDRRRLLQAAAGWSALGA----VGAAPARDLSGVTLRVGTYKGLWRPLLQASGQ 56 Query: 61 DKTPYRIEWKELNNGVLHIEALNGDALDIGSGSEIPAMFAARQNAKVRFVAVTHEDLNIQ 120 TPY+I+W+ELNNGVLHIEA+NGDALD+GSGSEIP +FAARQ + VR VAVTHEDLN Q Sbjct: 57 ANTPYKIDWRELNNGVLHIEAINGDALDLGSGSEIPPVFAARQKSSVRLVAVTHEDLNNQ 116 Query: 121 VTVAAKDAPIHSIADLKGKRVGYVRATTAHYFLAKQLEEAGLAFGDIEAINLTPSDGYSA 180 T+A KD+PI IAD KGKRVGYVRATT+HY+LA+QL EAGL+F DI+A++LTPSDG SA Sbjct: 117 ATLARKDSPIRRIADFKGKRVGYVRATTSHYYLARQLAEAGLSFSDIQAVSLTPSDGLSA 176 Query: 181 FASGKLDAWAIYGYNGQLAIAKQGARLLKTGAGYLSGNFPIYANPKAVDDPLRHAAVSDL 240 FA G LDAWAIYGYNGQLA + GAR +KTG GYLSGNFPIYANP+A+DD LR AA+ DL Sbjct: 177 FARGDLDAWAIYGYNGQLARTQYGARTIKTGVGYLSGNFPIYANPRALDDELRRAALGDL 236 Query: 241 LLRIQRAYAFANKNFPVYAAAQVAETHLPLQDILDQFARRSDDFALAGVTPDVPETHQKV 300 L R+QRA+A+ N NF YA AQ AET +P+ D+++ F RS D++L VT V +HQ+V Sbjct: 237 LQRLQRAFAWINGNFLAYARAQSAETRVPVGDLVELFNGRSGDYSLGPVTDAVVRSHQEV 296 Query: 301 ADTFLKLGVLDARAEVGKFWDTSFNEAIAAGAA 333 ADTFLK+GVLD A+V WD F + AA Sbjct: 297 ADTFLKIGVLDGPADVKPLWDRRFESLLRLPAA 329 >ref|YP_001773816.1| ABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein [Burkholderia cenocepacia MC0-3] gb|ACA95321.1| ABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein [Burkholderia cenocepacia MC0-3] Length = 329 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 199/293 (67%), Positives = 231/293 (78%) Query: 39 GVTLRVAYYKGGWRQLLQAAGEDKTPYRIEWKELNNGVLHIEALNGDALDIGSGSEIPAM 98 G TLRVA YKGGWR LLQAAG TPYRI+W+ELNNGVLHIEALN DALDIGSGSEIPA+ Sbjct: 37 GTTLRVATYKGGWRALLQAAGLADTPYRIDWRELNNGVLHIEALNADALDIGSGSEIPAV 96 Query: 99 FAARQNAKVRFVAVTHEDLNIQVTVAAKDAPIHSIADLKGKRVGYVRATTAHYFLAKQLE 158 FAARQ A VRF++ EDLN QVT+A +D PI SIADLKGKRVGYVRATT+HYFL +QL Sbjct: 97 FAARQKANVRFISRVREDLNNQVTLARRDTPIRSIADLKGKRVGYVRATTSHYFLYRQLA 156 Query: 159 EAGLAFGDIEAINLTPSDGYSAFASGKLDAWAIYGYNGQLAIAKQGARLLKTGAGYLSGN 218 EAGL F DI+ INL+P+DG SA+ G +DAWAIYGYNGQLA + AR+LKTG GYLSGN Sbjct: 157 EAGLTFDDIQPINLSPTDGLSAYDRGDIDAWAIYGYNGQLARNRYDARVLKTGKGYLSGN 216 Query: 219 FPIYANPKAVDDPLRHAAVSDLLLRIQRAYAFANKNFPVYAAAQVAETHLPLQDILDQFA 278 FP+YANP+ +DD R AA DLLLR +RAYA+AN +F YA AQ ET +P+ D++ F Sbjct: 217 FPVYANPRTLDDARRRAATGDLLLRFRRAYAWANGHFRDYALAQNRETRVPVADLVAMFD 276 Query: 279 RRSDDFALAGVTPDVPETHQKVADTFLKLGVLDARAEVGKFWDTSFNEAIAAG 331 +RS+DFAL VTPDV HQ+VAD F ++GVLD A V FWDTSFN +AAG Sbjct: 277 QRSEDFALLPVTPDVVAQHQQVADVFARIGVLDGPAHVAPFWDTSFNSVVAAG 329