BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0134.0006.p (303 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770489.1| substrate-binding protein [Bradyrhizobium japon... 521 e-146 ref|YP_004688444.1| glutamate/aspartate ABC transporter permease... 410 e-112 ref|YP_002501844.1| family 3 extracellular solute-binding protei... 375 e-102 ref|NP_774240.1| ABC transporter amino-acid-binding protein [Bra... 367 1e-99 ref|YP_001771318.1| extracellular solute-binding protein [Methyl... 364 9e-99 >ref|NP_770489.1| substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49114.1| blr3849 [Bradyrhizobium japonicum USDA 110] Length = 302 Score = 521 bits (1342), Expect = e-146, Method: Compositional matrix adjust. Identities = 245/301 (81%), Positives = 275/301 (91%) Query: 1 MRLPAILFALTLAASPATAEELSGTLQKIKEAKKVTLGFQEASVPFSYLDDNQRPIGFAL 60 MRLP ++ ALT A A+AE+LSGTLQK+KE KK+TLG+QEASVPFSYLD NQ+P+GFA+ Sbjct: 1 MRLPTVILALTCLAGAASAEDLSGTLQKVKETKKITLGYQEASVPFSYLDGNQKPVGFAM 60 Query: 61 DICLKIVDAVKKELGVSDIAVDYLPVTSSNRIPLMVNGTIDLHCSATTNSADRQKQVTFT 120 DICLKIVDAVKK+LG+ DI V+ L VTSSNRIPLMVNGT+DLHCSATTN+ADRQKQV FT Sbjct: 61 DICLKIVDAVKKQLGMPDIVVETLAVTSSNRIPLMVNGTLDLHCSATTNNADRQKQVAFT 120 Query: 121 NTHFLSATRFAAKKSAGINTIDDLKGKSVTAVAGSVNLTQLIKVNTERKLGINVLPAKDQ 180 NTHFLSATRFAAKK+A INTIDDLKGK+VTAVAGSVNLTQL KVNTER LGIN++PAKDQ Sbjct: 121 NTHFLSATRFAAKKAAKINTIDDLKGKAVTAVAGSVNLTQLAKVNTERTLGINIMPAKDQ 180 Query: 181 AEAFLMLETDRAEAYALDDVQLAVAIARSKQPSFYMISEEAFSKAEPFGIMLRREDTPFK 240 AEAFL+LETDRA+AYALDDVQLAVAIARSK+P+ +MISEE FSK EP+GIMLRRED PFK Sbjct: 181 AEAFLLLETDRAQAYALDDVQLAVAIARSKEPALFMISEETFSKPEPYGIMLRREDAPFK 240 Query: 241 ALADRATAELYKSPEIEVMYRKWLEAPTPPKGINYNVPMSPALRHAFANPSSSFDPDVYE 300 ALADRATAELY SPEIEV+YRKWLE+PTPP G+NYNVPMSPALR+A+ PSSS DPDVY Sbjct: 241 ALADRATAELYASPEIEVLYRKWLESPTPPNGLNYNVPMSPALRNAYKKPSSSADPDVYV 300 Query: 301 V 301 V Sbjct: 301 V 301 >ref|YP_004688444.1| glutamate/aspartate ABC transporter permease GltI [Cupriavidus necator N-1] gb|AEI82406.1| glutamate/aspartate ABC transport system permease protein GltI [Cupriavidus necator N-1] Length = 303 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 187/294 (63%), Positives = 239/294 (81%) Query: 6 ILFALTLAASPATAEELSGTLQKIKEAKKVTLGFQEASVPFSYLDDNQRPIGFALDICLK 65 + FA++L + A A GTL+K+KE K++ +GFQEASVPFSYLD NQ+P GF +DIC+K Sbjct: 8 LAFAISLTVTSAFAAGPGGTLEKVKETKRIVIGFQEASVPFSYLDANQKPAGFTVDICMK 67 Query: 66 IVDAVKKELGVSDIAVDYLPVTSSNRIPLMVNGTIDLHCSATTNSADRQKQVTFTNTHFL 125 IVDAVK+EL AV++ PVT++NRIPL++NGTIDL+C++ TNS +RQKQV FTN+HFL Sbjct: 68 IVDAVKRELNQPQTAVEFTPVTAANRIPLLINGTIDLNCASATNSVERQKQVAFTNSHFL 127 Query: 126 SATRFAAKKSAGINTIDDLKGKSVTAVAGSVNLTQLIKVNTERKLGINVLPAKDQAEAFL 185 +A+RFAAKKS+ + I+DLKGK+V +VAGS N+ QL K+N ER LG+N++ AKDQ EAFL Sbjct: 128 TASRFAAKKSSNLRKIEDLKGKTVVSVAGSTNINQLNKINVERNLGMNIVSAKDQLEAFL 187 Query: 186 MLETDRAEAYALDDVQLAVAIARSKQPSFYMISEEAFSKAEPFGIMLRREDTPFKALADR 245 MLET RA+AY LDDVQLAVAIARSK P+ Y IS++AFSK EP+GIMLR++D FKAL DR Sbjct: 188 MLETGRAQAYVLDDVQLAVAIARSKDPAAYAISDDAFSKPEPYGIMLRKDDPAFKALVDR 247 Query: 246 ATAELYKSPEIEVMYRKWLEAPTPPKGINYNVPMSPALRHAFANPSSSFDPDVY 299 TA +Y+SPEI+ +Y+KW +AP PP GIN+N PMS ALR+A+ PSSS DPD Y Sbjct: 248 VTAGIYQSPEIDTLYKKWFQAPVPPSGINFNYPMSQALRNAYQKPSSSADPDAY 301 >ref|YP_002501844.1| family 3 extracellular solute-binding protein [Methylobacterium nodulans ORS 2060] gb|ACL61541.1| extracellular solute-binding protein family 3 [Methylobacterium nodulans ORS 2060] Length = 305 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 172/296 (58%), Positives = 228/296 (77%) Query: 5 AILFALTLAASPATAEELSGTLQKIKEAKKVTLGFQEASVPFSYLDDNQRPIGFALDICL 64 A+ A+ +AA+P A EL+GTL+KIK++ ++ LG ++ PFSY+D++Q+ +G+ +DIC Sbjct: 9 AMALAMPVAAAPTGAGELTGTLKKIKDSNRIVLGVRDGGPPFSYIDNDQKYVGYTIDICD 68 Query: 65 KIVDAVKKELGVSDIAVDYLPVTSSNRIPLMVNGTIDLHCSATTNSADRQKQVTFTNTHF 124 KI+DA+KKE+ + V+ PVTSS RIPLM NGTIDL C +TTN+ +RQKQVTFTN HF Sbjct: 69 KIIDAIKKEINAPTLQVEMNPVTSSTRIPLMTNGTIDLECGSTTNNPERQKQVTFTNAHF 128 Query: 125 LSATRFAAKKSAGINTIDDLKGKSVTAVAGSVNLTQLIKVNTERKLGINVLPAKDQAEAF 184 ++ +RFA+KK+ IN IDDLKGK+V +VAGS NL Q+ KVN+ERKLG+ + AKD EAF Sbjct: 129 VTTSRFASKKAQNINKIDDLKGKTVVSVAGSTNLVQINKVNSERKLGLTIQAAKDTVEAF 188 Query: 185 LMLETDRAEAYALDDVQLAVAIARSKQPSFYMISEEAFSKAEPFGIMLRREDTPFKALAD 244 L+LETDRA A+ +DDVQL++ IA SK P+ Y ISE+AF+ EP+GIMLRR D PFKA+ D Sbjct: 189 LLLETDRAAAFVMDDVQLSILIALSKDPAAYTISEDAFALPEPYGIMLRRNDEPFKAVVD 248 Query: 245 RATAELYKSPEIEVMYRKWLEAPTPPKGINYNVPMSPALRHAFANPSSSFDPDVYE 300 RATA+LY+SPEI +Y+KW E+P PPKGINY PM LR AF +P+ S DP Y+ Sbjct: 249 RATADLYRSPEIAAIYKKWFESPVPPKGINYRFPMPAELRRAFEHPTDSPDPASYK 304 >ref|NP_774240.1| ABC transporter amino-acid-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC52865.1| ABC transporter amino-acid-binding protein [Bradyrhizobium japonicum USDA 110] Length = 303 Score = 367 bits (942), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 171/300 (57%), Positives = 224/300 (74%) Query: 1 MRLPAILFALTLAASPATAEELSGTLQKIKEAKKVTLGFQEASVPFSYLDDNQRPIGFAL 60 R + A T S A A+EL+GTL+ IK+ +TLGF+++S+PFSYLDDNQ+PIGFA+ Sbjct: 4 FRHIGLALAATFVVSQAGAQELTGTLKNIKDTGAITLGFRDSSIPFSYLDDNQKPIGFAM 63 Query: 61 DICLKIVDAVKKELGVSDIAVDYLPVTSSNRIPLMVNGTIDLHCSATTNSADRQKQVTFT 120 DIC KIVDAVKKEL + + V PVTS+ RIPLM NGTIDL C +TTN+ADRQKQV FT Sbjct: 64 DICYKIVDAVKKELKLDKLEVKLNPVTSATRIPLMANGTIDLECGSTTNNADRQKQVAFT 123 Query: 121 NTHFLSATRFAAKKSAGINTIDDLKGKSVTAVAGSVNLTQLIKVNTERKLGINVLPAKDQ 180 NTHFL+A+R+ KKS+G+ +IDDLKGK+V + AG+ N+ QL + N + LG N++PAKD Sbjct: 124 NTHFLTASRYVFKKSSGLKSIDDLKGKTVVSTAGTTNIKQLTEANVAKGLGANIIPAKDH 183 Query: 181 AEAFLMLETDRAEAYALDDVQLAVAIARSKQPSFYMISEEAFSKAEPFGIMLRREDTPFK 240 AE+FLM+ETDRA A+ +DD+ LA +A SK P Y+IS++AFSK EP+GIMLR++D PFK Sbjct: 184 AESFLMVETDRAVAFVMDDILLASLVAGSKSPDDYVISKDAFSKPEPYGIMLRKDDAPFK 243 Query: 241 ALADRATAELYKSPEIEVMYRKWLEAPTPPKGINYNVPMSPALRHAFANPSSSFDPDVYE 300 + D ATA LY S E + +Y KW A PPKG+N N P+S L++ FA P+ S +PD Y+ Sbjct: 244 KVVDAATAALYTSGEGQKIYEKWFTAKIPPKGLNLNTPISAELKNEFAKPTDSPNPDDYK 303 >ref|YP_001771318.1| extracellular solute-binding protein [Methylobacterium sp. 4-46] gb|ACA18884.1| extracellular solute-binding protein family 3 [Methylobacterium sp. 4-46] Length = 301 Score = 364 bits (934), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 170/294 (57%), Positives = 220/294 (74%) Query: 6 ILFALTLAASPATAEELSGTLQKIKEAKKVTLGFQEASVPFSYLDDNQRPIGFALDICLK 65 IL AA PA+AEELSGTL+KIKE +TLG++++SVPFSYLD NQ+P+G+A+DIC K Sbjct: 8 ILLVAGFAALPASAEELSGTLKKIKETGAITLGYRDSSVPFSYLDGNQKPVGYAMDICYK 67 Query: 66 IVDAVKKELGVSDIAVDYLPVTSSNRIPLMVNGTIDLHCSATTNSADRQKQVTFTNTHFL 125 +VDAVK +LG+ ++ V PVTS+ RIPL+ NGT+DL C +TTN+ DRQKQV+FTNTHFL Sbjct: 68 VVDAVKAKLGLPNLEVKLNPVTSATRIPLIANGTVDLECGSTTNNVDRQKQVSFTNTHFL 127 Query: 126 SATRFAAKKSAGINTIDDLKGKSVTAVAGSVNLTQLIKVNTERKLGINVLPAKDQAEAFL 185 +A+RF AKKS+ ++ DDLKGK+V + +G+ N+ Q+ + N KLGI +LPAKD AEAFL Sbjct: 128 TASRFVAKKSSNVSKFDDLKGKTVVSTSGTTNIRQINEYNAANKLGITILPAKDHAEAFL 187 Query: 186 MLETDRAEAYALDDVQLAVAIARSKQPSFYMISEEAFSKAEPFGIMLRREDTPFKALADR 245 M+ET RA A+ +DDV LA A SK+P Y+IS +A SK EP+GIMLR++D PFK + D Sbjct: 188 MVETGRAVAFVMDDVLLASLAASSKEPDAYLISTDAISKPEPYGIMLRKDDAPFKKVVDD 247 Query: 246 ATAELYKSPEIEVMYRKWLEAPTPPKGINYNVPMSPALRHAFANPSSSFDPDVY 299 ATA Y+SPE Y KW P PP+ IN N+PM AL+ AFA PS S DP +Y Sbjct: 248 ATAAFYQSPEGPATYDKWFTKPIPPRNINLNLPMDAALKKAFAKPSDSPDPAMY 301